Array 1 1815692-1813975 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN681227.1 Xenorhabdus nematophila AN6/1 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================== ================== 1815691 29 100.0 32 ............................. CAAAGGTTAAGCTTAGGAAAATAAAACAAAAA 1815630 29 100.0 32 ............................. CCCGATTGTCATTCCTGCAACAGCATCCCTTA 1815569 29 96.6 32 ............................T GGTGGGCGACGCAGTCGTTCGACCGGAATGGC 1815508 29 100.0 32 ............................. AATTCGATAAGATGGATGTTGCTGTCCGTTTT 1815447 29 100.0 32 ............................. CTATTGCAAATACTCAATGAGGATGAAAAATT 1815386 29 100.0 32 ............................. AGAATGTCATTTAAATCTTTTGGTCTTGAGTT 1815325 29 100.0 32 ............................. CGTGTAGCATTTACTCTCTGATTTAGAAAGTT 1815264 29 100.0 32 ............................. GCCGCTATTGCGACCAAAAATTCAAATTATTT 1815203 29 100.0 32 ............................. GGGCAAAACGCATTTGCGTCGTAGAGGGGTTT 1815142 29 96.6 32 ............................C GCCGGGTTGCCCGTTTGCACGAACGTGCCGCC 1815081 29 100.0 32 ............................. TTGAAATTCCTGATGAGCTGGTGGAGGGGGTA 1815020 29 100.0 32 ............................. TAATGACATTTAATCAGGTTGAAAAAGTCAGG 1814959 29 96.6 30 ............................T TTAATGCCACCGGCGAATACGAAGAGGCCA 1814900 29 100.0 32 ............................. AGAAAATTTAGAGCGTTTGGCTGTGCTATATG 1814839 29 100.0 32 ............................. AAACTCTCACATAGTGTAAATCACGCGGACTG 1814778 29 100.0 32 ............................. CACAGGCAGGCAATCAACAACTCCCAAAACTC 1814717 29 100.0 32 ............................. ACACGGAACCGTCCCGCTGTTTTTTGCGGTTA 1814656 29 100.0 32 ............................. TACAGAATGAGTACAAATTAATATTTACTGTG 1814595 29 100.0 32 ............................. GCATCATCCAGCATGATCTGGGTGGCGGCCGG 1814534 29 100.0 33 ............................. CATTCCGCGCGTTAATGAAGTTCCTGATTTTCC 1814472 29 100.0 32 ............................. CCTTTAATAATTCCTGTTTTCCCTTTATCAAT 1814411 29 100.0 32 ............................. GCCAGATGGATGTTGTAGATGGAAAAGCAACA 1814350 29 100.0 32 ............................. GCCCAGCTGGCTGCCGCTCTGCCTAATCATAT 1814289 29 96.6 33 ............................A GAAAAAGCCCGGATAGGTGTGGCCAACAGAGCA 1814227 29 82.8 134 .................C...CG.G.G.. TGAACATTTTTTAAGCTTGAATTGTATGTTATGAAATCACATATCGGGCAAAAATACCTCAGAATGGTCTTGTTAAGGCATTGCTTAGTATTTTATTTGCTCTATTTGATCAAAAATAAGCCTTTCATGCTCTC A [1814209] 1814063 28 82.8 32 ACC..G..-.................... CTTACGGCGGTATTGCCAGCGGGGCGCAGATT 1814003 29 86.2 0 .............A.....A..C....T. | ========== ====== ====== ====== ============================= ====================================================================================================================================== ================== 27 29 97.7 36 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : AATAGCCAGTGGTCGTTTACTGCCATCCTCCTTCGGGATCTCCGTGATTCTGGCTGCTTTCGGGTGATACGTTCCTCTGCGTATCCGCAGGATAAGATTGTTAATATTATCATCAAGGTGTTCACCGTAAGTGGCCTTAGTTATGCGATCAATACCCACCGCTTTACTCCCGTCAAGCCGCAAGAATTGCTCTTTCAGCATATCAACATTCAGCAAATGTCCTAAGTTGTTGAACACCCGCTGCTTGTTATCTGCTGATTTCTTGCTTATATGAAAGCGTTCTCATTTTGGTTAAGGCTAACAGGTTATTTTGCGATTGCTGTGATAGGTGTCTTAGAATTTGATAAGCCAAAATGAAAAATATGAGTGAAATGCGATCTGCATTGCAGATAGTGATTCAGGAAAAATAAAAGAGATAATTTAACGGATTTATTGGCTGAAAAAATGGTAGAATTTTTATGCTCTAAAATTATCTTATAAAACAGATGGATAAAATTAGA # Right flank : CCACGCTGCATCTTGAAATCCATTGGATATAGAACTTTTTACCATATTTGAGGAAGATCGCAAAAATTACTCGTAATGTAGTTTAACTCCAAACTTCCTCATACAAGTTTGGGGCTAAACATTCAGGCTGTTAAAACAGAAAAAATAAAAACTACCCACGATAATACAATATTTAATAGCTTATTTATTTTAGCTAATCTGAACATTAAGGTGAAATATGATGATGGAAATACAATAATCATAAAACAAAAATACATCAAACTCATGTTTCTAGCACCGTAAAGAAATGGTAACAATAAAGTGATAAATGAGATAACTAACGCAGGTAACCATATGGCATAATATTCATCATCTTTACTTTCACAAGAAAATATACACAATACTAAAAAGAGATTGATTGTCGATATAATGGAAGTGCCATGAAAATAAAACCAGATGTAATCAGAGAGCTGGGTGTTCGGAATGATACGCTATATGCGCGAATACAAATATTACCTCAT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3578771-3577581 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN681227.1 Xenorhabdus nematophila AN6/1 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3578770 29 100.0 32 ............................. CCATTTTATTTGAAAATAGGCAATGAAAAGCT 3578709 29 100.0 32 ............................. GATTGTTATCGAAAAACTGTTCAGGCAATGAT 3578648 29 100.0 32 ............................. AACGATGAGTTTGCCCCGCACGTTCTCAAAGG 3578587 29 100.0 32 ............................. GCACAGCGAAAAATCTGCTGGGGCAGACTGTT 3578526 29 100.0 32 ............................. GGTGATTTTTGACGGTTCAAACGCTTTCAGCT 3578465 29 100.0 32 ............................. ATAAAATACAGCTCCACTCCCTTGAGTTATCA 3578404 29 100.0 32 ............................. CCTGCCGATATTTATTACTGGCTTCATTGGGT 3578343 29 100.0 32 ............................. GTGATGCACCATCTACGTTTTTTTCTAAAATG 3578282 29 100.0 33 ............................. AAAAATTCACAGGTTAATATTTCATTTGATGTT 3578220 29 100.0 32 ............................. GCCACGCGGCGGGAGATTGCATTAACCGAATA 3578159 29 100.0 32 ............................. TGATATAGACAAAATCATTTTAGAAAAAAACG 3578098 29 100.0 32 ............................. CCTATGCGCCCACAGGCGGTAAAGATATTGAA 3578037 29 100.0 32 ............................. TAAACATAGAAACTCATCAGCTATGCTATATC 3577976 29 100.0 32 ............................. CCAATGAGGACACCGAAGAACTGGGCGAGACT 3577915 29 100.0 32 ............................. TCTATGATATTGCACAGCTTGATTCTGCGGCT 3577854 29 96.6 33 ............................T GATGATACGTAATGAAATGATTTGAGCTTTGAG 3577792 29 100.0 32 ............................. TGTTACTCAAACGGTCAGAACGGCGCAAGCTA 3577731 29 100.0 32 ............................. CCTCAGGTTCCGCGCTTTCCAAGATGTGACCA 3577670 29 100.0 32 ............................. ATAGCCTGTTTTTGACTGACTTACTTTGAGTA 3577609 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.8 32 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : TACTGAAAATATCTTTCAACGAAAAACAAAGAAGCAACTTCTATAAAATAGAATAGAACGGATTCCTAGATATGCAAACTTCTACATAAATTTATTTCCATTCGCGTATTTATCCCCGTACTTACGGGGAACATGGAGTTATAAACAAGGAAATTCAAAGTAGCCATGGTTTATTCCCGTATTAACGGGAAACATATACACATAATGAAGGAATGTGAATGTTCCAATTCTTTATCTTTCTTCTTAAGAAAAGTATATATCGAATTACTATCTTAGCCATATTTAACAGAAATAGTGATTTAGAGCGTGGTAAAGCACTGTAGGTATATCTCTGTTTACTATTCGTCACCTTTATATCTTTATGTAAGTGATCATAAGGAACCTAATAGTAGGTGATAGGTAAAAAATAAAAGGAATAATTTGGCTGATTTATTGGCTGAAAAAATGGTAGAATTTTTATGCTCTAAAAATATGTTATAAAACAGATGGATAAAATTAGA # Right flank : GAACGCCTGAATATCGTCAGCGCAGGAGACTTGTGAAGCGATGATGCCACGAAAAAAAGAAGTGACACGCCTTATATCGCCGCCCGCATTGGGCGACAGTTTTTGCTACAAAAAGAAAAATCCCCGAGTTCAAAACTCGGGGATTATAAATTCTGGCGGTGCGGACGGGACTCGAACCCGCGACCCCCGGCGTGACAGGCCGGTATTCTAACCAACTGAACTACCGCACCGCGTGGTGTTCTGGTTGAGAACGGGACGGATGATACGAGCTACAGTAAAATCCGTCAATCGCTTTTTATAACAAAATGGTTTGTTTGCGCAGTTTTTCGCCTCAACAATACATTTCCTTCCATTTTGTGACTATTTTGTTAGTGAATCTGTTCGGATTTCGGACGCCAAAGGCAACTCCCTCCTTTCTTCTCCACTAAGTCCAGGCGGGATTCATGCTGGGTTAATTCTTCATCAGATGCGTAAATCACTTTCAACCCAACCTGAGGACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3589054-3589936 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN681227.1 Xenorhabdus nematophila AN6/1 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3589054 29 100.0 32 ............................. AAAGTTTCAGCACCTATTAACGGAATTATTCT 3589115 29 100.0 32 ............................. AGCAGCTATCAGCGGGTATGAGGCAGGCGAGA 3589176 29 100.0 32 ............................. AATCCATTGTTGATAATGGCGCTGATTTCAAA 3589237 29 100.0 32 ............................. TCGGCGATTTCTGCGGGGGTGGCACTCTATTG 3589298 29 96.6 32 ............................C CGCGACAGAGCGATTACACTGAGGGAGGGGGC 3589359 29 100.0 32 ............................. AATGACTCACCTCAGCTTTGCCATTACAGGTC 3589420 29 100.0 32 ............................. TGGCCTGTGAAAGTGGATGCAGGAAAAACTAA 3589481 29 100.0 32 ............................. AACATATTCAGAAAATGGCATGTCAATTATCA 3589542 29 100.0 32 ............................. ATTTTTCGCCTGTACGTCGTAAAACTGCTCAA 3589603 29 100.0 32 ............................. GGATAGATCCTCGTAACTTGGATGACCCCACA 3589664 29 100.0 32 ............................. GTAACGCAGACAAAAACCTACATCGACAAAGC 3589725 29 100.0 32 ............................. CGTGACGATGTTATCTGAAAATATTAATGAAC 3589786 29 93.1 32 ............CC............... CCATATCTGGTTATCGAAGTCAATCTCATCCC 3589847 29 93.1 32 ............CC............... GATATTATCGACGCAGCGAATGATTTAACCGA 3589908 29 93.1 0 ...........G.A............... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GAGGTCTCCGTAGGTACGGAGATAAACCG # Left flank : CCTGATTGAAGAAATCCTTGCCGCCGGCGAAATCTCACCGCCACCACCGCCTGCTGATGCCCAACCGCCTGCCATTCCCGAACCTATATCCATCGGTGATATAGGTCACAGGAGCCAGTAAAAATGAGTATGACGGTTGTTGTGACAGAAGCTGTTCCGCCCCGGTTGCGGGGACGTTTGGCCATTTGGTTACTGGAGATACGCGCCGGGGTTTATGTCGGGGATATCTCGCATAAAATCAGGGAGATGATTTGGGAACAAATCACAGAACAGACCGAAGATGGCAATGCAGTTATGGCCTGGAAAACCAACACTGAATCAGGCTTTGATTTCCAGACCTTTGGGGAAAACAGAAGGGAACCGATAGATTTTGATGGCCTTCGTTTAGTGAAGTTTAAACCACTTGCTGAGGAGTAGCTTAGAGAGATTAAAAACTACTTAAAGTCGGTAGAATTTATACCGGCAATAAAGAAGATTAAAAACAATTGGTTATATTTAGG # Right flank : GTGGTTTATGACACAACAAGATGAAGAAGATACGATTCCCCCGTAAATACGGGGAAATCCCCCTCAACTTGTCACACAAAAAAGCATAAGCATAAGCATAATTACTTATTTGAAAAGATAACCGAAATAACATAAAAATCACCAAAAAGTATTTTGGTAGTCATTTATTTTGATTTAGTCAATATAAAAACAAAAATAAAAGTTCATCTGAGCTAAATTTATTTTTTACAATCAGAATATATCGAGATAAAAAGTAACATCAAAATAATGACAGTATAAAATGGTGATATTTATTAACATATAAGGAAAATAAAACGCATTTTTTTGATGATAAAACCAACGAAAACTCTAAATTTTGCCACAAACGCTTCCCAAGCATCATTCGTTAATGATTGTCAAAAATACCTATGCTAACCTACGCCGCTTTTCATCCCCCTTGCTGTTGATTTTATAAGCAATTATCTGTCGGAAATAGGAAGCGAATTAACTTATGAACTTAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGGTCTCCGTAGGTACGGAGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGGTCTCCGTAGGTACGGAGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //