Array 1 781-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVER01000013.1 Carnobacterium sp. PL24RED07 13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 780 36 100.0 30 .................................... GGTTTGGTGTAAGCGGTGATTACTTTGTAG 714 36 100.0 30 .................................... GCTTAGCCCCACCGTTCAATCTGTGCATTA 648 36 100.0 29 .................................... TAAACTACCAGGAAGGAGGACAACATGGC 583 36 100.0 30 .................................... GTATCATCAAGCTCAATTGCTGATAATTCA 517 36 100.0 30 .................................... AGGACGATTTGTTTATTTTTATATAAGTCA 451 36 100.0 30 .................................... CAACGTCAGAATAGATAAAATAATTTGCTA 385 36 100.0 30 .................................... TCTTCTTTAAACTTCAGGAACTCCACAAAT 319 36 100.0 30 .................................... AGCGTGAGGTTGATTCAGAAGGCAATATGG 253 36 100.0 30 .................................... GTCGAATTATATGCACTTGGATAGTATGAG 187 36 100.0 30 .................................... TATAATTCAGCCATCACAATAAAAGGGTGG 121 36 100.0 30 .................................... AGCATAATATTTAGCATCTTATCTGGCGCT 55 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTACTGATAGGAAATTATTGAGAGTACAAAAAC # Left flank : AACCACCATACTGCTGATGATAGCCTCGACCGATAATTTGGCTATTCTTTACGATAACTGCACCAACCATAGGATTAGACCTTGTCCAACCCTGTCCTAATTTGGCTAGGTCAAGTGCTTCTTGCATATAGTCTTTCATTCACTCATCCTTTCTCTAAACAACAAATAATCCAGTCAGAGTGACGAAAAAAGCCCTAGAAATAAGATTCCTAGGGCACACAAATAAACTATAGACTTATAGTATTCGTTTATTTTGATTCTACTCTTCTTCCATCCAGACTCTACTGTCGGTCTCGGAATTACACCGAGTCAGCCCCTAATCAAAGGAGGTCGCGGACTTTACCGCCGGTCGGGAATTACACCCTGCCCTGAAGATTTTATTTGAATGTTTATGGTGATATCATACGGTATTAAAAAGAAAATGTAAACCCAAATGTATTTTTTAAATTAAAAATATATACTATAGGGTATTTAATATCAATTAACATAACAGTGATATT # Right flank : CTATCATGTTATTTTTAAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACTGATAGGAAATTATTGAGAGTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 99187-101070 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVER01000005.1 Carnobacterium sp. PL24RED07 5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 99187 36 100.0 30 .................................... ATGAAATATTTAAAAAGATATCCAAATCGG 99253 36 100.0 30 .................................... AAAAAGTGGCAAATGAATGGTATAAGTCCT 99319 36 100.0 30 .................................... CATTAGTTATCACAGTCATTCCAACAAGTG 99385 36 100.0 30 .................................... TGATAGCGTTCAAGAAGATAACGCATTTAT 99451 36 100.0 30 .................................... ATTAAATACCAATAAATTGTCTGAAGTATT 99517 36 100.0 30 .................................... CGTAACGCAATTGACTTTGAAGCCCGTACA 99583 36 100.0 30 .................................... TAATTGTAGCAATAGACATAATTCTCGTTT 99649 36 100.0 30 .................................... CGTAGATAATTTTTAAGTCACCATCCGGGC 99715 36 100.0 30 .................................... ATTAGCAAATTTACCTGATCATTGTATGTT 99781 36 100.0 30 .................................... GTGGTTTAGTAAACCCAGCCACTTCACGGT 99847 36 100.0 30 .................................... CATTCAACTCACACTCCTAACTGGTTCAAG 99913 36 100.0 30 .................................... CTGTATTCACTTTAATTTGACAACCTTCAT 99979 36 100.0 30 .................................... TTCAGGTACTATGAACTATGTGTATCTGGA 100045 36 100.0 30 .................................... CTGGTAAACCAAAACAAGAATTACTCGATA 100111 36 100.0 30 .................................... GAAGAACTGAAAAAGTTAGCTGATGGCTAT 100177 36 100.0 30 .................................... TTTCATAATGTCGCCCCTTTCAATATACTA 100243 36 100.0 30 .................................... CAGTGGGCACGCCCGTGCGATCTTTGTTGT 100309 36 100.0 30 .................................... TTATATTATAACGTAGTAATGTAGTAATTG 100375 36 100.0 30 .................................... TAAAAACGAGCAGCATTTAACGGATAAGAT 100441 36 100.0 30 .................................... CAAAAGCATATTATTCTTACTACTCAGACT 100507 36 100.0 30 .................................... AGGGCAACGTAGCTGGTAGCTTTGGATTAA 100573 36 100.0 30 .................................... AAGTACTCAAGGAAATATCATTGCAAGGTA 100639 36 100.0 30 .................................... AAATAGCTAGTTGTTTTTCTTCCGATGCAT 100705 36 100.0 30 .................................... TAGGTACGATATCATTACCGTATCCTCTAA 100771 36 97.2 30 ...........T........................ CGATCCAGATACAGTTAAATGGTTTGAACT 100837 36 100.0 30 .................................... CCAATCTGGGATTACATCAAATAACCTACT 100903 36 100.0 30 .................................... AAGTAATTCAGAACGTGATACATTCTTTAA 100969 36 100.0 30 .................................... TTAATATCAGTATTAGCTGATACTAAACGC 101035 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.9 30 GTTTTTGTACTCTCAATAATTTCCTATCAGTAAAAC # Left flank : GTGTCACGCACTATTAGTCAGAGCGGTAATAGAGTTTGGATTATTCTTGATGGGATTGATAGACATCTTTCACAAGATGACTTTAAATACTTATACGATTCTCTAGTAGATATTTCTAGAGATACTCAACGGTTGAATGTAATTTTATTCAATGTGGATTATGCATTGTGGCGATTAAATATTGCACTAGAAGATTTTATTGTAGTCTATAAGGAAATACAGCAGCTCTATCCAATAAATGAAATGTACCAAAGCATTGAGAGACATTACCCTGATAGTTTCATAATAGATGAGGAGAATTTACAGCAAAGAATTTTGACCGTAATTCCATATATAGGATATTCTGAAGTAGTTTCTTTAAGCAATAAAAATATGGTAATATTAAAGGTGCTGAAGAAGTTGTTAGGCGATGAAACAAAAATTGAGACGTCATTTGAATCGCTAAGCAGCTTGGAAAAATTATTTCTTGAAGACTAAGGTCGATAATTTTTGAATTTGAG # Right flank : TTATGTTTACACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCCTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 34413-38671 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVER01000012.1 Carnobacterium sp. PL24RED07 12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 34413 36 100.0 30 .................................... GGTGGCTATTATGATACAACAACAGGTTTA 34479 36 100.0 30 .................................... TATCAGCTTTTTGGGACTTCCTAGAAAATT 34545 36 100.0 30 .................................... AAATAATCCTAATCTTGAAACGGTTCTACC 34611 36 100.0 30 .................................... TTGACGACATGATGTAAGGAAAACTGAATA 34677 36 100.0 30 .................................... AAAGGAACCGTTCAAAACTAGTAGTAGCTT 34743 36 100.0 30 .................................... TCCATATGAGCAATCACATCTGCTAAATTG 34809 36 100.0 30 .................................... TGCTTTCGAGTTTAACGATGGTACTACAGT 34875 36 100.0 30 .................................... TACTGGCTTAGAGAGCATATACAATTGCTC 34941 36 100.0 30 .................................... TTACCCTTGTACCGTCCAAAGTCAAAGGGT 35007 36 100.0 30 .................................... AATATTGAGGATTATGCCACGTATGGAGCA 35073 36 100.0 30 .................................... TCCTGCGACAAGACTTCCGGCTCGTCGAGT 35139 36 100.0 30 .................................... TCATTCGTGACAGTAGCATATTTCATTGGT 35205 36 100.0 30 .................................... AATTCTATTTTCAGTTGTTTGACGAACACT 35271 36 100.0 30 .................................... TTGGTTGCTAAACATCCCAATGGAGCGCCA 35337 36 100.0 30 .................................... CCATCAGCTTTACCGTCCATGTTTCTGTTT 35403 36 100.0 30 .................................... ATTAGTCCTTGTTTTTCCCAAGCTTTTATG 35469 36 100.0 30 .................................... ATTAAAAATGCTGATGGAACTCATGCTATG 35535 36 97.2 30 ............A....................... AACTCTGTATGGCATTCGTTCAAATAAACT 35601 36 100.0 30 .................................... TTGGGCATCGGCTATTGAATTTAACTTCAA 35667 36 100.0 30 .................................... AGACAGTTATTAGAAACTTGTTGAGTAAGT 35733 36 100.0 30 .................................... CTTACTTCGCAATCTTCACGCATTTTGGTT 35799 36 100.0 30 .................................... TGAAGTCAGAGCATGATGTTAAACGCATCA 35865 36 100.0 30 .................................... AAGGGTAAAGTTTTTTGGTATAGATATGAA 35931 36 100.0 30 .................................... ACGAAAATGGTGGAGAAAACGGAAAGTAGG 35997 36 100.0 30 .................................... CACTCCTTGGGTCGCCAAACTTTCGGGAGT 36063 36 100.0 30 .................................... AATAAAATCAAAGTAAAACTATTTAAAGGA 36129 36 100.0 30 .................................... ATAGAATTAAATACTATGACTATCCTGAAA 36195 36 100.0 30 .................................... TTAATATAGAAAAAAGCCCCTATAAAACAA 36261 36 100.0 30 .................................... ATCAACTGAGATGAATAGGCATTTCCTGTA 36327 36 100.0 30 .................................... AGCGGTTAGAAATGGCATCCAAGAGATTAA 36393 36 100.0 30 .................................... TTGTTGTGTAACTGTGGTTGTGGTTAGGAA 36459 36 94.4 30 .........T...............A.......... TTAAAATCTAGTTAAAAACGCTGATTTTAT 36525 36 100.0 30 .................................... TGTAACCATTTCATAAATCACGTCAACTTG 36591 36 100.0 30 .................................... GACGTTAAGGAATTCAAAATTTAGAAGTTA 36657 36 100.0 30 .................................... CAAAAAATTCAATAGTAGAACCTTGCATAG 36723 36 100.0 30 .................................... TACCTTTTACTGTAATATCAACGTTTCTGA 36789 36 100.0 30 .................................... ATTGGGAAAAGATACAATTAATTAAATACT 36855 36 100.0 30 .................................... ATCTTTAAATCAACTGACAATGGTAAAACA 36921 36 100.0 30 .................................... TCTAGATTTCTTACCTAGTTCATCATCCAT 36987 36 100.0 30 .................................... AAGGTGACGCCTTATTCGATAACGTTATAC 37053 36 100.0 30 .................................... TGATTGTGTATGTTTGACTTGCTGTTACTT 37119 36 100.0 30 .................................... TGATTGTGTATGTTTGACTTGCTGTTACTT 37185 36 100.0 30 .................................... GCGTACGAAAATTGGACAACAAACTATTTG 37251 36 100.0 30 .................................... TTACCCTAGTGCTCGCCAAAGTCAAAGGGT 37317 36 100.0 30 .................................... AAAAGGAATTACGGCTGTTTCGTTGTTCTT 37383 36 100.0 30 .................................... CGAAAAAGAGAACAAAATCAAACTTTACAT 37449 36 100.0 30 .................................... TCGAGGATAACTTATTCATCGACGCTGGTA 37515 36 100.0 30 .................................... TGCGTGATGGTGAAGTATTAGTTGGTGATG 37581 36 100.0 30 .................................... GATCGTGCTGAATTTTCTGTGCAAAATAAC 37647 36 100.0 30 .................................... TGCGATAGATCATATCATCCCTGTTTCTAA 37713 36 100.0 30 .................................... TCTTAACGTGCCTAATATTTTAGTGTGCTA 37779 36 100.0 30 .................................... ATTTATCGGTTGAACTATCGCCTACTAAAT 37845 36 100.0 30 .................................... ACAATACCACCCTTAACAATTGTTTGGAAG 37911 36 100.0 30 .................................... TAAAAACGCAACATACATACCTGACTGAAT 37977 36 100.0 30 .................................... TACAAAGCTCATGATTAAGAAGGATGGGCT 38043 36 100.0 30 .................................... AGCCAATGACACAAGAGAGCCAATCAGCAT 38109 36 100.0 30 .................................... ATTTACATTTTGAAATTAGTGACCAACCAT 38175 36 100.0 30 .................................... TTCTTGCATAAATTCTTTCAAGGTGACGTT 38241 36 100.0 30 .................................... CAAAAGCTAATTTACGAAAAAAGCAGCACA 38307 36 100.0 30 .................................... ATACTCGTGAAAGCGAATCAATCAAAGCGT 38373 36 97.2 30 .............................T...... TGCAATGCCTTGAATAACAATTAAAAAGGA 38439 36 100.0 30 .................................... TGAAGTTCTATCGGGAACGACTTTATCATT 38505 36 100.0 30 .................................... ATGAGATTGGCTTACTTTGATTAATATCGG 38571 35 77.8 28 ............A...A....-.....T..TG.T.T TTAATTACATTGTATTCCCCGCACCAGC A [38600] 38635 36 75.0 0 ......TT...A....A...TC.G...G..T..... | C [38668] ========== ====== ====== ====== ==================================== ============================== ================== 65 36 99.1 30 GTTTTAGAGCTGTGTTGTTTCGAATGACTCCAAAAC # Left flank : AATGATAGACAAAATGTTATCAACAATACAAGACTTGATTGACTATGAACTAATAGATAATGAATTAGATCTTGAAAGTGATGAAATTACAATTCAAGAATTGTTTAAAGTTTTAGGTATTCAAATTGAGGTGTTGAGTGATACAATAATCGAAAAAATATTTGAGATTATTCAAGTTTTTAAATATTTATCAAGTAAGAAACTACTTATTTTCATCAATATAGGTGCATATTTGAATAAAGAAAATTTAAGTGAATTTTCAGATTTCGTTTCTTTGAATCAGTTAAAAGTTTTGATGATAGAACCAAGAAAAGTTGCTGGAATCAAACAATATATACTAGACCAAGACTACTTTCTAACCCATGAAATGGTATAATGTAAGAGAGAATTTGTCCTTTGAAAACTAAATAATTATCTTATAACAACAAACGATTCATTCGAAACTGAAGCTTTGCTATGGGCTAATGGCGCGATTACGAAACCTTATTTTTTTCTACGAG # Right flank : CTTTTGTTTATAAGACAATTATTCAAAACCGGCATGCCATCTAGTACTGGATGACATGCCGGTTTTTCTATAGCCTTATTCTCTTAATTTTCTAGAAAAATCGCTTTTGTTTCTAAGTAGTCTTCAACACCAAATAGACCGTTTTCGCGACCTAAACCGGATTGTTTGTAGCCACCAAATGGCGCAAGCGGATTACGTTCTGATTTGTTTACAAAGATATTACCAGTTCGTAATTGCTTAGCCACTTTATAAGCATCTTCAGTAGGTCCAACTACTGCACCTGAAAGGCCGTAAATTGAGTCATTTGCAATTTCAATGGCTTCTTCTTCAGTATCGTATGTGATGATGACAAGTACAGGACCAAAAATTTCTTCTTGGGCAATCGTCATATCATTAGTGACATTTGTAAAGACAGTAGGTGTTACAAAATGACCAGTTTCAATGGCTGGTTTTTTATCACCGACTAAAACTTTAGCACCTTCTGCTTTACCTTTTTCAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //