Array 1 14209-19439 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPQ01000045.1 Methanosarcina mazei strain 3.H.A.2.5 scaffold26_1_size60330-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 14209 32 100.0 34 ................................ ATGCAGAGGCATCTTGAAAAGGAAGGGATACACG 14275 32 100.0 32 ................................ AGGCAGGAGTAGACGAGGTACAGAGCACAGAA 14339 32 100.0 34 ................................ AGGGAAAACAGGCATTGTAATCAGAGGAAAAAAA 14405 32 100.0 35 ................................ CCTTATCTGTGAAGTAGGACGTGGGATACTCTCAT 14472 32 100.0 35 ................................ AGCATATCGAGCATGTCCCTCGGATATCCTGCGAG 14539 32 100.0 34 ................................ TCATTGGGCAATAATAGAGGGATCTCGTCCCGTC 14605 32 100.0 32 ................................ TGTTTGCGACAACGACATGCGGGGATACGGGC 14669 32 100.0 35 ................................ TGATAAGGTCACGCGATTTATCCCGGCAGCCACCC 14736 32 100.0 34 ................................ AAACCCTTTGTCAAGAAAGTAGGAATCGAGAAGC 14802 32 100.0 34 ................................ TAGACTTGCGTCTATATTGACTGATTCATGCAGT 14868 32 100.0 34 ................................ GATAAGGCTGGAAGATATCGATATTCAATTGATC 14934 32 100.0 33 ................................ AAAACGGAGACGGCACCCTTGTAAATATTACAG 14999 32 100.0 34 ................................ ATCAAAATATTTCCTGACGTATATCCAATCGATG 15065 32 100.0 31 ................................ CCTCTGAATCATAGGAATAATACCCACCAGG 15128 32 100.0 39 ................................ AAAATCGCATTAACCTCCTGGACCTGCTCCGGCCAGAGT 15199 32 100.0 33 ................................ CAATTGTTGCGGTTCCGAGATCAAAACCTGCCA 15264 32 100.0 35 ................................ AGTAATAATGGAGTCATAAGACCCAAAATCATGAA 15331 32 100.0 35 ................................ TCTTCTTGAGGTGGTTTAAATGCCTAAATTTAACC 15398 32 100.0 36 ................................ TTGTAGAATACTACAGTGTTAAGCCCCGTGAATGGG 15466 32 100.0 38 ................................ TTCCTCAGTACTCCGTTTACCCTCACATACAGTACCCC 15536 32 100.0 36 ................................ TTAACAAGGTCTGCGCCTTCGTCGAGCGTTAACAGT 15604 32 100.0 34 ................................ CGAAGTATTTTCAAAAAGAAATAACAGCTTAATA 15670 32 100.0 36 ................................ TTACTACAGGTGCCCCTGGTCTTGCCTGTGCGAGTT 15738 32 100.0 32 ................................ ATGAGCGTGATTGTAAACGGGACATTAGCAAC 15802 32 100.0 35 ................................ CTTAAGCACAGTTCTATTTTTTGACCTCGATATTT 15869 32 100.0 33 ................................ AGTTCATTATGCTGATAGTCCCTAAGATAGAAC 15934 32 100.0 35 ................................ TATTTGGTGTCAGCATTATTCCAAGTTCAGCTGAG 16001 32 100.0 36 ................................ TCTCAAATGTGTCTTTCATGGTTGCCACAAGTGCGG 16069 32 100.0 34 ................................ CTTAAAGTAATACAATAATAAAACCGATAACAGG 16135 32 100.0 34 ................................ ATGTTCGTTTGTGGGTCTTTTTCGAAAACGAAAT 16201 32 100.0 37 ................................ TGTATTATGCATTGCCACAATGCGCTCGGCTGCTGCT 16270 32 100.0 35 ................................ AGATCACTAACTGTGATATCATAATCCTCAAACAT 16337 32 100.0 34 ................................ AATATAATTAGTTATAGAAAAATCTGGGCGACTC 16403 32 100.0 34 ................................ ACGCCACCAAGGGGATTGCATTAGGCTTGTATAG 16469 32 100.0 37 ................................ GGTGATTATGTCCTTGACTATCGTGCTTTTTGTAAAA 16538 32 100.0 37 ................................ ACGCCACCAAGGGGATTGCATTAGGCTTGTATAGATC 16607 32 100.0 34 ................................ AGAATTAGCTGGCATCATAGAAAATTCGCTTCTA 16673 32 100.0 34 ................................ AGTTTCCTGATCTCCGTAATCAAGGAACGGAAAC 16739 32 100.0 36 ................................ ACAGACACTATATATATCAGCGTTTGACGGTCTAAA 16807 32 100.0 32 ................................ TAAGCCTGTTTGGTCTTGCAGACCATAAAAAA 16871 32 100.0 34 ................................ ATAAAAGCAGGGCGGGTGACTGTTGAATTAGGGG 16937 32 100.0 33 ................................ ACTAAAACGTAGCTTTCCGCAACTGAACATCCT 17002 32 100.0 36 ................................ AGTGCATGGTGATAGGCAGGATAAGCCCCAAATACG 17070 32 100.0 34 ................................ AGTTGTTGGTTATTTTTATGTTAAGAGGATTCAA 17136 32 100.0 34 ................................ TTGCACGTTAGGGACCGCACTAAGCGCGGAAAGA 17202 32 100.0 35 ................................ TCGTTTTCCCAGGTCATGGTTATCCCTCAACTACC 17269 32 100.0 34 ................................ CATATTTTAGAATTCACGTACCCCCCGTCTTCAT 17335 32 100.0 36 ................................ CAGGACCTTACCCGGCAACAATACGAGCTCTTTAAA 17403 32 100.0 34 ................................ CGTATAAACCACAGACATAATCATCAATGTCAGG 17469 32 100.0 33 ................................ TAAAAAAGAAACTTGATGAATGTAAAAAGGGGA 17534 32 100.0 36 ................................ TAAAACTTCGATATCAATCATAATGTGGCTCCGATT 17602 32 100.0 36 ................................ AGCAGATGGGAAAACCTGGACCGCCGCAACCTGCCC 17670 32 100.0 34 ................................ TTTGAATTTAAGAACGTCGAGAGAACCGGCTGCA 17736 32 100.0 35 ................................ CACTTGTCTACATTGTCCATGCGAACATTTCCCCC 17803 32 100.0 35 ................................ ATCTAACGGATTGTATAATAGATGGTATAGGGAGT 17870 32 100.0 34 ................................ CCGGAGCGTACCAGTTATTCCTGCCGCTCTAGCT 17936 32 100.0 34 ................................ CTTTACCCATCCAAACATCCCCGCTTTTTTGGAC 18002 32 100.0 33 ................................ GAGGAAGACTTAGACACAGATGAGGACCTGGAC 18067 32 100.0 36 ................................ TTTTTCGCACTGTATCCAGCCCTTACAACAATTGGG 18135 32 100.0 35 ................................ TTTAATTATATCGTCAACTACTTCATAGATATACT 18202 32 100.0 38 ................................ CCCATTCGCAAGACTGCTGTTGGGGTTCCGTGTAGGGC 18272 32 100.0 35 ................................ CGAAACATACGACTGATTTGCCGAATTCCCGTCGA 18339 32 100.0 34 ................................ CTGATATTACTTTTATTTGCATTCGGGATGGCTC 18405 32 100.0 35 ................................ AGATTCAGGGCACTCAAATTTCACATATGCCGGGC 18472 32 100.0 34 ................................ AAGACATTGAGACAGTATTTTAAGGAATTTCAAG 18538 32 100.0 36 ................................ CTGACGAAAAATATAATATGGTCACTGTTTATGGTA 18606 32 100.0 35 ................................ TCAGGAGCAACATAAACTAGGGTTTTGTTTCCGAG 18673 32 100.0 35 ................................ TCTGATGGAGCCGGAAGGAAAATCCCGTATTGGAT 18740 32 100.0 34 ................................ CATATTTTAGAATTCACGTACCCCCCGTCTTCAT 18806 32 100.0 35 ................................ TTCCAGGGATTGCACATGCCGCAGAAGAAGATCAC 18873 32 100.0 32 ................................ CAAACAAAGATGCCATATTGACTAAATCAAGA 18937 32 100.0 33 ................................ CCCGCAGGAGTCGCGGAAACATAAGGCCCCAAC 19002 32 100.0 38 ................................ CGGCATACTGCCAGGATATGTATAAGTCAAACTTTCTA 19072 32 100.0 35 ................................ TTTTTGAAGTGCCCTGGTTTGCTGAATATGTGATA 19139 32 100.0 34 ................................ AGTATCTACAGGGCATTTGTCCCCATCGTCAAAC 19205 32 100.0 34 ................................ ATTGCCCCGATTATCCAGGCAGAAAGAGTCGAGA 19271 32 100.0 36 ................................ AGATTAGAGGTTGTCGGCTGAAATGAATTAGAAGTA 19339 32 78.1 35 ...A..T......A......A..A..C..T.. CAGTCAAAGATTCCCTTTATTCTGACCTCGATTTC T [19345] 19407 32 90.6 0 A...............A............G.. | G [19435] ========== ====== ====== ====== ================================ ======================================= ================== 79 32 99.6 35 GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Left flank : AGATATTGACGGTTATCCGCCATTTTTTATGAATTGAGGTGTTTATAGTGATGGTACTGGTTACTTATGATGTAAACACAGAATCAGAGGGTGGAAAAAGCAGGCTGAGAAAAGTGGCAAAAGAATGTGAAAATTACGGGCAAAGAGTTCAGAACTCTGTATTTGAGTGCCTTGTGGACCCTGCTCAGTTTGCAGAGCTAAAACATTCTTTATGCGATATTATGGAAGAGGATAAAGATAGTCTCAGATTTTACTACTTGGGTAAAAATTGGAAAAATCGGGTGGAGCATTTTGGCGCGAAAAAAGGGTATGACCCAGAAGGTTTATTACTTGCATGATGTCTGCGAACCTGTAGTAAACATCAATTTCCCGGGGGTTCGCAGGAAAAATTTGTTCATAATATTTAATTTTTGTGACGGTTTATATCTATAGTCAATACTTAAAATTTTTTAAGACAGAAAAATACAAGATGGTAGAAGTATAACCTTAATTTATTTACA # Right flank : TGTTAAAGCTGTGGCCTTGACATTATCAAGAACCATTTTTTATACAATGTCAAGCGAATTTGAAAAATAATAAACGGCAGCAGAAGAATAATATTTTTACGTAAGAAATCTTCGGAAAGCCAATTATTAAAATCTCATATCCCTGCTTCGTACATTGCTTGAAGTAATTCATATTCTGCATTAATGACTTCAGGAGTTCTATCTTTGTTTAATAACGAATTCATTTTATCAAGTGCTCTTTTATAATTTTCAACTTCCACCGGGCAATCGAAGAGATAATTAACTTTTATTTGTGGCTTATCGGGGTTCTCTGCGTTCCATGAAACCCTTAAGAAATTATGGTTCGCATCCATGACCTCAGCATCATAAATAAAGTCCATGCGTTCATGTTTAAGTAATTCAGATTTAGATACCCCACTGTCTACTAACCGCTGCCTGGCTCGTGCCTTTGCCATCTCAAACTCTTTAGAACAGCGCAAGAGTTCAGGAGTATATGATAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15193-6132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPQ01000106.1 Methanosarcina mazei strain 3.H.A.2.5 scaffold51_1_size30718-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 15192 37 100.0 37 ..................................... AGTTATAAATTATTCCGTCTGTGTTGTGGTAGCCCCG 15118 37 100.0 35 ..................................... AGCATTTCGATTAATGCAAGTGCTACATAACAAAG 15046 37 100.0 35 ..................................... GGAGGTATAGGATGGCATCCGAAGAAAAAGAGTTC 14974 37 100.0 34 ..................................... TATACAGGTTTTTATAATGTGGTATATGTAAGTT 14903 37 100.0 36 ..................................... AACACTTTTTTAGCAGAACTGTAAACCTTAGTTGCT 14830 37 100.0 36 ..................................... TACAATTACGTCCTTACACAGTTCAACAACGTAAGA 14757 37 100.0 35 ..................................... TTTTCACCGCTTTTTAAAGACCACTTTCTTGTACC 14685 37 100.0 38 ..................................... GTATGTTACTCGCATCACCTTGCGAGATTTTTTCTAAG 14610 37 100.0 35 ..................................... CTGCGTAGTTGGTGAGGAATAATGGTCGGCATAGA 14538 37 100.0 35 ..................................... TAGAAAATCAGGAAGTAGAGCCATTACCAAAAATC 14466 37 100.0 37 ..................................... TCACTTGAGACCATAACTTTGTTTGAGGTCCCCGCGT 14392 37 100.0 35 ..................................... CTGGATTCATAGTGTCTTTAAAAACATGTACATAA 14320 37 100.0 36 ..................................... TTCGATTATTCCAGGCTTCTATATTTTGACTTTCGA 14247 37 100.0 36 ..................................... ATTAGTAACAGTAAAGCATATAGTATGTTAAAATTA 14174 37 100.0 37 ..................................... TTAAGAGTATATTTATTACCGATTTCCGGATATATGC 14100 37 100.0 37 ..................................... ATTTTTGCGATAATACCATGCTGTCCTGAATCGAATT 14026 37 100.0 33 ..................................... ATCAGTTCCCGGTTCATCTCAGAATTCAGTATC 13956 37 100.0 35 ..................................... AACGTGTTCACCACGAATTAGCTGACCAATATGAA 13884 37 100.0 36 ..................................... TAATAAAGTTGCATGTCATCTACCTTATGTATTTCA 13811 37 100.0 37 ..................................... CTTTTAGGAGTGTTTATATGAAATGGCATTCTATTAT 13737 37 100.0 34 ..................................... TTCCAATGCCCGCAGATTCCGTTGCATATGTAAT 13666 37 100.0 36 ..................................... ATCCCCGTTCCGGCATGGATTAGGGATGAGCTTAAT 13593 37 100.0 36 ..................................... CACTGTTGCAGAAGGTGGAGCAAGCGACATTGTAGC 13520 37 100.0 35 ..................................... TATTCTTGTAAACCATGTTTGTATTACTCCATTGC 13448 37 100.0 34 ..................................... TCCATTCCAACCAGCATCAGTTAAACATATTATG 13377 37 100.0 37 ..................................... AGTATTAAAAAGGCATTATTAGAAAATTGAAGTTCAA 13303 37 100.0 38 ..................................... TTAAAATCCCTTGTAAACTCGTCAATATCTGATACAAT 13228 37 100.0 35 ..................................... AACAAGAACTTAACAGCATCAGAAGACAGCTTAAA 13156 37 100.0 35 ..................................... TCTGAGACTCATTATAAAACCCAAATGCGAATTTT 13084 37 100.0 33 ..................................... CTCGTACCTTATAAATCCCAAAATCAATATTTT 13014 37 100.0 36 ..................................... CATTTCCAACGGCGTATTAATTTTTTCATGTATGTG 12941 37 100.0 37 ..................................... CCTCAAACTTAAACTCATCCAACCTTCTCCACCACTA 12867 37 100.0 37 ..................................... TCTTGTATCCTATTTCAGTAGCAATTGCCTTATAGCT 12793 37 100.0 35 ..................................... TTTGCGTAGATCTTGAATCGTTCACAGTCAATAGT 12721 37 100.0 36 ..................................... AAAAGTCAGTCCCGGCCAGCCTATGCGCTAAGACTT 12648 37 100.0 35 ..................................... CAGAGTTGTAAGTTACCCCGGAGGTTGCAACTGCC 12576 37 100.0 36 ..................................... TGGTTGATGTATGCGGTTCTGCCGGGAACATAATAA 12503 37 100.0 38 ..................................... AGGCGGAACCATATTCGGAAAAACTCCCCTTGTCAATG 12428 37 100.0 35 ..................................... TCAACCATTAAGGACAATCTAATAAACGGATTAGC 12356 37 100.0 37 ..................................... TACCGTTCATGGTATCGGACATATCAAAGCCAGCAAG 12282 37 100.0 34 ..................................... CATTCCCTTCCCCTGTTCCTGAGCCTCCCTGTGA 12211 37 100.0 36 ..................................... CTATTGTGAACCCCCGCAGACCTAAGAGGATTTTCA 12138 37 100.0 37 ..................................... TTTCCACAATCAACATACCCCGTAAGCCCATCAAACT 12064 37 100.0 34 ..................................... TACTCAGAGCGACTGATTCAATGAGAGGAGACCC 11993 37 100.0 34 ..................................... TTGTTTTTGTTTTGCCCTTCAGGGTCCCTGTAAT 11922 37 100.0 35 ..................................... TGCCCGCGTAGGTAGTCGAAAGACTGAAAGCCCCG 11850 37 100.0 40 ..................................... CATTCCCTTCCCCTGTTCCTGAGCCTCCCTGTGATGAAAT 11773 37 100.0 36 ..................................... TCCTTGAACCATCTAGCACCTGATACGGCTAGATGA 11700 37 100.0 39 ..................................... TTATATTGTCCTTAATGGTTGATAACATCCCGGTGAACG 11624 37 100.0 34 ..................................... CTAATTCCGTTTCATCAAAATTAGAGGGAGCCGT 11553 37 100.0 34 ..................................... TCACAATCGAAACTCTCACAAAAGAACATGCGTT 11482 37 100.0 35 ..................................... TATACTTATAGGTAATTACCTATAAGTATGTGCGA 11410 37 100.0 35 ..................................... TCAATTATACAGGCGACCTAGGTTCACAGCTAACG 11338 37 100.0 35 ..................................... CAAATGTCTGCATAGGCTCCGACATGCCCGCAAAA 11266 37 100.0 37 ..................................... ATCAATCAGTTCTCAATTCAGACCGGCTTACGATTGC 11192 37 100.0 36 ..................................... TGCCGAATTCTTTCATTCTTTCAAATTCGCCCTGCT 11119 37 100.0 46 ..................................... CCCTTGTTTACTGTGCTATAAAACGTAAGCGGTAAGCTTCCAGAGG 11036 37 100.0 37 ..................................... AATAATAGATATTCTTTAGTGTCTCATCTGACACGCC 10962 37 100.0 34 ..................................... TTTTCCTCTCTCTTTTTTCGCCTCTCTTCTTTCT 10891 37 100.0 34 ..................................... TACGTTGCCTGCAGCGAGGAAGTCGCCGGAGCCT 10820 37 100.0 35 ..................................... CTCATAACGGTTGTGCGTAAAGAGTACAAAACCGA 10748 37 100.0 33 ..................................... TCTTAGTAATGCTCGCAGGAGTCGGTGGTGCAC 10678 37 100.0 35 ..................................... TACGAAGTCGTATTCGCACAAATTAGCGACTAAAA 10606 37 100.0 35 ..................................... AAACGAACGCTAAAACTAAAACTAAAGCTAATTAA 10534 37 100.0 33 ..................................... CCTTCGGGCGTCCCTGCAGTATGCCAGTAATTA 10464 37 100.0 35 ..................................... ACGACTGCTGTAAGTCCTGGTCTAAATACTGGATC 10392 37 100.0 35 ..................................... ATGGGGTTTATTCTTTGCTTTTCAATCTGTCCTTT 10320 37 100.0 37 ..................................... TTTAATACCTGGGCAGTGTTTTCAGGCCCTTGTTTTT 10246 37 100.0 34 ..................................... AAGCTTTTGAGGGCTCAGCGACAACGACAGCTAC 10175 37 100.0 37 ..................................... TCCATTTTATTAGTCGCTTTTCCTGCTGGAATCCTTC 10101 37 100.0 34 ..................................... TTCATGGGGAGTTTCACAGCTGGCTGTGTAGGAG 10030 37 100.0 38 ..................................... ACTCCTTTAAGAGCTTCACAAGCGCAATCTCTAGCTCC 9955 37 100.0 35 ..................................... TTATCGCTCGCAGGTCTTCCTCTTCTTCCTGTTGT 9883 37 100.0 35 ..................................... CACAGTTGTCCAGCCTTACACAGTCTGAAGTAATC 9811 37 100.0 38 ..................................... AGTCTTGTACTCTGGGCAGCCTTTTGACCTGCGGTAAT 9736 37 100.0 36 ..................................... TTTATATTTGGTATCCGCTTTAGAGGTCTCCGTTTT 9663 37 100.0 36 ..................................... TTATTCCCTTCCTGGAAATTCCAGGGAGAAATAGAG 9590 37 100.0 37 ..................................... TAAAGTTATTGTTGATATACATGCAGAGAAAAACCGT 9516 37 100.0 34 ..................................... CCTACAATTCCTATGAAAACTAAGAAAGAAACGG 9445 37 100.0 35 ..................................... TAACCTCGGCAGATGGTGGAGAGACATGGATTGAG 9373 37 100.0 34 ..................................... ACGTCAGGTCTTACAGGGTCTTCAATCCCCACGT 9302 37 100.0 35 ..................................... TATATAACTTTGCATTCTATAAGAATTAAAAAAGA 9230 37 100.0 35 ..................................... TATTCTACCGTTGAAACATGCCGGATCAATGGGGT 9158 37 100.0 37 ..................................... GCAATAATCGTAGTGAGGAAAACAGGTGAAAGGTTAG 9084 37 100.0 36 ..................................... AAAAACGTGTCGTTGAAAATGTCCGGTTCAAATGAA 9011 37 100.0 37 ..................................... TTGCCCGCTTGTCGGCGTTGCTGAGTTCTTTGTACTC 8937 37 100.0 37 ..................................... ACGATAATGCTATCCCTGTTTTGAAAGAAACTATTTT 8863 37 100.0 37 ..................................... TATACTATATCCGTGACTATAGTATTGTATGACAGAA 8789 37 100.0 37 ..................................... TCGCTCTTTCTCTTTTCAGCAAATCATTAACAAGCGT 8715 37 100.0 37 ..................................... TGATATCTGTTGCACTCCTTCATATATGCAAGAAGTC 8641 37 100.0 33 ..................................... GTTCCCTGCTGTAGTATGAGCCGAAATTGGGAG 8571 37 100.0 36 ..................................... TGATATCTGTTGCACTCCTTCATATATGCAAGAAGT 8498 37 100.0 35 ..................................... TTCCATGTATCCACTATATAGACGAAAGGGTCTCC 8426 37 100.0 35 ..................................... TTTTGCCGCTAGAATTACACATCATTCACCAGAGT 8354 37 100.0 39 ..................................... AGAAAGTAGTAGGAATTAAATGGTTCGATTTCTAACTAA 8278 37 100.0 34 ..................................... ACTGCTCCATTGAGACCTTTCTTGTTACCGAAGT 8207 37 100.0 37 ..................................... AAAAATGTCTCTATTATATACGCCTGATGTCCGTAAA 8133 37 100.0 34 ..................................... TTGACGTGGAGCGCGGAGGTCGCGAAAACCCACG 8062 37 100.0 36 ..................................... ATTCAGAACCTTACATCAAGCCATTTCCGGGCACTG 7989 37 100.0 36 ..................................... GTGATGGATTCCTTGAGTTTCACCTGAATCGCTCTC 7916 37 100.0 35 ..................................... CGCACTAATTAACACGAATTAAAAGAAAAGTAACA 7844 37 100.0 38 ..................................... TTTTCTTTTTCAGTCGTCCCGGTCATGGCTGCAGACGA 7769 37 100.0 36 ..................................... TGAATTACATCTCCCGGATCTGCGGGCATGGTCCCG 7696 37 100.0 36 ..................................... TGAATTACATCTCCCGGATCTGCGGGCATGGTCCCG 7623 37 100.0 35 ..................................... TGCTTATTTCGAAGTAGCAAACCTGTACTTCGGAT 7551 37 100.0 36 ..................................... TGAATTACATCTCCCGGATCTGCGGGCATGGTCCCG 7478 37 100.0 35 ..................................... TGAGCTCGGTTTCTCTGTTGAACTTCTCCGCTTCG 7406 37 100.0 36 ..................................... TTACGGAGGCTACAGAAAAAGCCGTAGCTGATACCG 7333 37 100.0 34 ..................................... GAAGGAAGTGAGCTTGTTTTAGACTGTGCTGCTA 7262 37 100.0 36 ..................................... ATGCTAAAATCGCATACACTAGGCTGTCTACCCTAT 7189 37 100.0 36 ..................................... TATGTATATTCATATATTCGAGCACGGCGAAGAACT 7116 37 100.0 35 ..................................... TGGATCGTGGAGGGAGAAGATTGAGTAATAAAAAA 7044 37 100.0 35 ..................................... AACATAGATTTTGACGAGCAGGACATAAACCAGGG 6972 37 100.0 35 ..................................... AAAATGATTCATACCTTTGTAATTCAGATTTAAGG 6900 37 100.0 36 ..................................... TTGTCCGGATTTTGTGGATTCTTGATATTTCCCTGA 6827 37 100.0 41 ..................................... GGTTGCCCGTATGGTGTTTCGATCATATCTTCGTCACTCCT 6749 37 100.0 37 ..................................... ACCAAACCAAAGCAAGCCAGAAAGCCTGGCAGTATCG 6675 37 100.0 36 ..................................... ATTCTGCGGGTGGGGCTGCCGTCACAATGGGCGGGA 6602 37 100.0 35 ..................................... CAACGATGTAATGTTTTGGAATTGCTTTTCACCTT 6530 37 100.0 35 ..................................... TAGACCCCGCAAGGCCCAGAAGTGCGGTCCTAACA 6458 37 100.0 36 ..................................... TTTCATAAATTCGAGTCACATAAATATCCATGATTG 6385 37 100.0 35 ..................................... TGCGGCTTTATCTATTCAGGAATCTGAACTAAAAG 6313 37 100.0 36 ..................................... ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 6240 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 6168 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ============================================== ================== 125 37 99.9 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 55952-47547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPQ01000079.1 Methanosarcina mazei strain 3.H.A.2.5 scaffold1_1_size107921-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 55951 37 97.3 38 .....T............................... TATTTTTGATAGATGTAGCCAGTGCAGGCCAGATAATT 55876 37 97.3 38 .....T............................... TATTCAAGAGCAGGCCAGGAACTACCGCGCCAAACTGT 55801 37 97.3 35 .....T............................... TGGCTTTTGCGCTCGTTGGAGGAACTACCCAACCT 55729 37 97.3 38 .....T............................... TCCAGACCGGTTGAGACATAGGGGTGGCAGACGGAAAG 55654 37 97.3 41 .....T............................... TTGAGTATGTTAAGGGCTGCTGTTCTTACGTTGTTGAACTG 55576 37 97.3 39 .....T............................... TTTATCAGACTTGCGACCCGGCGACCTCCACAAAATCCA 55500 37 97.3 35 .....T............................... AGAACTCGGAGCAGGCAAGAAGCAAAACATACCGA 55428 37 97.3 36 .....T............................... TTTAGTACTGTTCTGCCTTCCGTTTGTGTTCATTTG 55355 37 97.3 35 .....T............................... TCAATAAAATTATCTTGTCCTCTGTGACCTCTCCT 55283 37 97.3 36 .....T............................... AAAATATCAGTATTGTTAGTACCCTTCCTATAGGGT 55210 37 97.3 38 .....T............................... ATACAGGCTTGTTAGAATTACTCAGGTTTGACTTATTT 55135 37 97.3 35 .....T............................... GCCGTGACTTCGATAAGCTTCTCATAAATTGCGGC 55063 37 97.3 35 .....T............................... ATGCGATCCGCCAAAAGAGAAAGCTGTTCAGGAAT 54991 37 97.3 34 .....T............................... GCGTCTGTTGTATTTTCATTTGCAAATGTGACGG 54920 37 97.3 35 .....T............................... CGGTCCAATTTGGATCAGGAACCGAAACTCTAATC 54848 37 97.3 37 .....T............................... ACCCGTTGTTAGTCTGATACTACATGGACATTTAGGC 54774 37 97.3 35 .....T............................... ACAGATTAACATATTCAGATTCAAGAGCATCAACT 54702 37 97.3 37 .....T............................... TGGACAGGGAGCGGGTTTTTTGCAGGGAGGTTGTAAT 54628 37 97.3 34 .....T............................... TGTGCAGACGGGATAATCTGAAGACGCTCATCAT 54557 37 97.3 35 .....T............................... TGTTAAAATTCCTTCTGAAGAATTGAACGGGGCTT 54485 37 97.3 36 .....T............................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAAC 54412 37 97.3 36 .....T............................... ACACTCGCGAGCAGGGAATATCCATTCCCTAGATCC 54339 37 97.3 36 .....T............................... GAATTTTCAGGACTCACTTTCGATGGAAATTACAAT 54266 37 97.3 36 .....T............................... CCTAATAAGTTCCAAGCTTTATCAAGTCTGTTTCTG 54193 37 97.3 37 .....T............................... CATCCTGTGAATTCAGGAAGCAGTCTTGAAGCAAGAA 54119 37 97.3 35 .....T............................... CATGAGCTTCCAAGGCGCGGGATGGTCGAAACCTG 54047 37 97.3 35 .....T............................... ACACTTACTTCAAGCAGTGCCGACACTTCCGCGAA 53975 37 97.3 33 .....T............................... GCCCCGATCTCCTGAAGAAGAGGCTGGATATTT 53905 37 97.3 35 .....T............................... CTTCGTGATACCGTTTCCCCATCAAAAAAGAATTA 53833 37 97.3 34 .....T............................... TGCGATTCCACAGACTCAGTGAAACCCATGTCAA 53762 37 97.3 38 .....T............................... ATTATACCCCCCATATATACACGCGTATTATCAGAATT 53687 37 97.3 36 .....T............................... TCAAATCAGAGCATTATAAACAGTGAAAATAATAAT 53614 37 97.3 34 .....T............................... AATACTTCTGCTGAAAAACATGTTATTTTTTGAG 53543 37 97.3 37 .....T............................... TTGAGTCGATATCTTCCCAAAATGTCTTTCCATTGTT 53469 37 97.3 35 .....T............................... CTCACCCAGTTCTTCAACTACTCCGGAACTTGACA 53397 37 97.3 37 .....T............................... TCTATTATTTCCTCTTGCATCATTCCACCCCTAACAC 53323 37 97.3 35 .....T............................... CTATTACAGAATCTCCTTTTGGCGGGCTGAAAGGT 53251 37 97.3 36 .....T............................... TATAGCACGGGTATCGGCAACAACTAAACTCTGTAA 53178 37 97.3 35 .....T............................... CTGCTTGTAAGATGAGTTCGTTTACCATTGTTTTA 53106 37 97.3 35 .....T............................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 53034 37 97.3 36 .....T............................... TCTCTGCTTCGTTCTTTTCATATGCTTTTTCTGCTT 52961 37 97.3 35 .....T............................... ACGCATTGTGTTAGCATCACAGACTTAAAATTATC 52889 37 97.3 35 .....T............................... CAGTTAATTTTTCATTATTGATTCAATGAACAGGA 52817 37 97.3 35 .....T............................... ATGATACGTGGGTTCAGTGCATGGTAATCGGCAGG 52745 37 97.3 35 .....T............................... GGAGTCTGGCATCTATCCACTTCTCAGATGTTCTC 52673 37 97.3 35 .....T............................... CTCGGTAACAATATCAAAAACGCTATCAGTGATGT 52601 37 97.3 34 .....T............................... CTTATATATGAATTCGGTTTTAACCTTCGTTTCC 52530 37 97.3 34 .....T............................... CATTAGCTTTTCAATTAACTTCTCATTTGCCTTA 52459 37 97.3 34 .....T............................... ATTCAAGAAGCTCTTTTTTCATGGTTTGGATTGA 52388 37 97.3 37 .....T............................... ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 52314 37 100.0 35 ..................................... TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 52242 37 100.0 34 ..................................... TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 52171 37 100.0 36 ..................................... AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 52098 37 100.0 35 ..................................... TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 52026 37 100.0 35 ..................................... AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 51954 37 100.0 35 ..................................... TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 51882 37 100.0 34 ..................................... TTTATAATGTACCAGATCCATTCTGGCTGAATTA 51811 37 100.0 37 ..................................... TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 51737 37 100.0 35 ..................................... CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 51665 37 100.0 38 ..................................... TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 51590 37 100.0 37 ..................................... TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 51516 37 100.0 33 ..................................... AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAA 51446 37 100.0 35 ..................................... AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 51374 37 100.0 35 ..................................... AAATCTGCAATCGCTCAAGAATTCAAAGATAAGAG 51302 37 100.0 35 ..................................... ACAATACAATTACTCATTCTCCAGTTTGATCCATA 51230 37 100.0 35 ..................................... TTCGTGTTATCGCTTGACCAAGTCCATTAACCGCG 51158 37 100.0 34 ..................................... TAATTCTTGCTTTTGTGATTCCCTTCTTCCTGAC 51087 37 100.0 36 ..................................... ATTCGAGAGTCCGTAAAGCGTGGGAGACAAGGAGGT 51014 37 100.0 36 ..................................... CACACTGCAATAACTCCTAAAATATGGAAAGCTACA 50941 37 100.0 35 ..................................... CATGGTGATAGTCATGGTTAACAAAGTGTTTAAAT 50869 37 100.0 35 ..................................... CTAGCGACAGGATCTGCTGTAAATGCATCATAAGA 50797 37 100.0 34 ..................................... AGATAAATCGCCCATGTCTACAAAAGAAAGAAGA 50726 37 100.0 35 ..................................... TGTCTCTAGCGGCACTCTGCTCACCAGCTCGATTC 50654 37 100.0 32 ..................................... TCGGCACTGTTATATTAAGGAGTCCGAGAGGA 50585 37 100.0 34 ..................................... TTTGTTATCACTGATTTGCGTCTCGGTGTTAATG 50514 37 100.0 35 ..................................... CGGAAAGAGACTTAACGCTTTTCCAGACCTGAAGG 50442 37 100.0 37 ..................................... CTCATCAAATCTGTTGGAGCTTGTGCCCGCTTCGCTC 50368 37 100.0 36 ..................................... CACTGTTGCAGAAGGCGGAGCAAGCGACATTGTAGC 50295 37 100.0 34 ..................................... TACGTTGTAGTGTTTGCAACCTCATTACCATCAA 50224 37 100.0 36 ..................................... ATACTAATACGCTTTTTAGATATAAAAAGGTATCTA 50151 37 100.0 32 ..................................... CGTTTCCTTCTTTGAGGATGCAGGTCATTTTT 50082 37 100.0 35 ..................................... AAATCTTTTTTATCGCTTATCTGTTTCCAGTGATA 50010 37 100.0 34 ..................................... TAGTTACATTCCATCAACAAAAAGAGCCTTACAG 49939 37 100.0 34 ..................................... CTGTCTAGGCTGCCCGTATCTATTTCGATTCCGG 49868 37 97.3 34 .....C............................... TTAGTAGATACTTAGCTAAGTAAATGTATAAATA 49797 37 97.3 35 .....T............................... CTTATGTTCTGTGCTCTTAAAATAGTGCGCGAAAA 49725 37 97.3 37 .....T............................... CCCATTTCCCGCCGTACTTTTCAAAACCACAGTCAAC 49651 37 97.3 33 .....T............................... AAAAATGACTGAAAGAGCACCAAATAGACCAGG 49581 37 97.3 35 .....T............................... CCATGTTAAATCCTCACGTTGATATCAGATATTGA 49509 37 100.0 34 ..................................... AGTTTTCCCTCAAACATCTGATTACCTAGGGCAG 49438 37 100.0 36 ..................................... TTTGAGAGTGTGCAATATTTGAATTGTTCTTTTTTT 49365 37 100.0 35 ..................................... AAAATACAAGTAAAGTAAGCCACACAATCCCTCTC 49293 37 100.0 35 ..................................... AAAAATCCCTCAAAAAAGCCTTTTCTCAAATTGAA 49221 37 100.0 34 ..................................... CCAACGTATCAAGAAATTGAAGTGACTACTCCCA 49150 37 100.0 36 ..................................... TTGATTCTTCCAACGGGTCTACAAATACCGCGTCCC 49077 37 100.0 35 ..................................... ATGGGCTGTCTAAAGGGGCTAATGGGGCTAATTTC 49005 37 100.0 36 ..................................... CGTCCCATCCGGCAAGAGCGAGGTAATACATGGCTT 48932 37 100.0 34 ..................................... TTTTTCAAAAGAGGACATTAAAAAGAATAACAAG 48861 37 100.0 36 ..................................... TTGGAAACTCGCAAATCCTGTAAAAATTGAAAACCC 48788 37 100.0 35 ..................................... TACAAATCCTGGACATTTCCAGAATATGAATTCCC 48716 37 100.0 34 ..................................... TTACAATGATCCTGGATACGGGTCAAAGTCGGTA 48645 37 100.0 37 ..................................... TTTTGCTAGCTTCTAGCATTCTCACACTTAATAGCTG 48571 37 100.0 35 ..................................... CAGTTGCGGTATGTTCTTTGACACCTACAATAATT 48499 37 100.0 34 ..................................... AATAATAATACAACAAGTCATCCAAGTGACGGGT 48428 37 100.0 43 ..................................... TAACCCTCACAAACAGGGGTAATCTACTGTTAGAGTGCCTGAC 48348 37 100.0 32 ..................................... TTATCAGCGTGGATATAATACTTATATTTCTT 48279 37 100.0 37 ..................................... ATTTTGTTCGGGGATTTTAGATTTTTGACTTTCGACA 48205 37 100.0 36 ..................................... TGGTTGCCTGTCCTTGCCCGTCAAGAACGGTATTGG 48132 37 100.0 38 ..................................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 48057 37 100.0 38 ..................................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 47982 37 100.0 34 ..................................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 47911 37 94.6 0 ...................................GT - Deletion [47875] 47873 34 81.1 36 ---.....AGT..C....................... CTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 47803 37 83.8 35 TG......AGT..C....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT T [47788] 47730 37 86.5 34 .G......AGT..C....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT T [47715] 47658 37 83.8 36 GG......AGT..C....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC T [47643] 47584 37 81.1 0 TG......AGT..C......................G | T [47568] ========== ====== ====== ====== ===================================== =========================================== ================== 117 37 98.0 35 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAGAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTGT # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [36-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //