Array 1 11260-8111 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDQL01000047.1 Virgibacillus sp. SK37 strain DE0495 NODE_47_length_26346_cov_82.847202, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 11259 32 100.0 34 ................................ TTTTTTTGTACTCTTTGATAATATAGGCTAGTAT 11193 32 100.0 36 ................................ TGCTCTCCGAATGCCTCAAATTATAAGTTTTATTAA 11125 32 100.0 34 ................................ AAATTTAGTTATTCCTAACCCTTGTAAGTCAAAC 11059 32 100.0 34 ................................ AATTTTGATCCAACTATTTTTATGAATGGTTATA 10993 32 100.0 35 ................................ CTATAACTGGAGGTTATACAATGTTAACGGACAAA 10926 32 100.0 33 ................................ CTGAACAAGACTTTAAAAAATTGGTTCATGCTG 10861 32 100.0 33 ................................ AGTCCTAATAATACTTATCTAATACAAGACAAA 10796 32 100.0 34 ................................ TTTCCATTTGAGGAACAATTGTACTGAACATATT 10730 32 100.0 36 ................................ ACCCATGATGTTTCTAATAAACGTATAACAATCATC 10662 32 100.0 35 ................................ TATCTATTACAATACATCTTATCCAATAAGCCTAT 10595 32 100.0 37 ................................ TCTAGGTTGTCAGCCAAAAGGCTTTATTAAATATGAT 10526 32 100.0 33 ................................ TACAATATGAAAGATGCGTTGAAACGTAAAGAA 10461 32 100.0 34 ................................ GATAATATAGAGGCATATAACAGCGATTACGAAA 10395 32 100.0 36 ................................ CGGTAAATGAATTTTATTATATAGGTAGCAGCTTAA 10327 32 100.0 33 ................................ ATAATATTTTCTTAATCTCTCTTTCGCTTTTTC 10262 32 100.0 37 ................................ TCGTTATCCTCTTGTAACCTAAGAATCTCGCTTGAAG 10193 32 100.0 35 ................................ GGAAACTCCTCTCGTCGAATACGACAAAGGTGAAA 10126 32 100.0 33 ................................ AGTAATTATATAATGATATTCGTTGTTATCACC 10061 32 100.0 34 ................................ ATCTTTAACAGTAACCCTTGATCTAACAGTTCAT 9995 32 100.0 35 ................................ AGTAAATAAAATGTTTCATGAAAGTGATTTGCAAA 9928 32 100.0 33 ................................ TTCCTTCTTCTTGTGCTTTTTCTTGTAATTTTC 9863 32 100.0 33 ................................ TGAATCGCCTCTTGAATGTCAACATTTGTCAAC 9798 32 100.0 34 ................................ CTCCTAATTTTTATTTCTTATCAAAATTATATCG 9732 32 100.0 37 ................................ AATCTCTCCTTAAGTAACTTGGCTTCTTCGTAATTCA 9663 32 100.0 34 ................................ ATTTTCACTTATTTCTTCAAAAGCTGCATTCACT 9597 32 100.0 33 ................................ ACAATAAATCCATCATATGCCTTCATAAATCCA 9532 32 100.0 36 ................................ ACGTGCATCTTTTGCGTTTATTCCTGCTCCAGTATA 9464 32 100.0 35 ................................ TTCATTTCCCCATACTACGCTAATTTTATCGCCTA 9397 32 100.0 33 ................................ CGCTATGAAGTATATGAGAATGAATCATTAGTT 9332 32 100.0 35 ................................ AGGTGAACTGTATTCATATGATAACGAAACGGATC 9265 32 100.0 34 ................................ TGCAGCACTAGAGCCGTCTAATACAGGAGGTATA 9199 32 96.9 36 .......................A........ GGATGCCAAGATGAGTTTTAGACTGCAAAGTGGTAA 9131 32 100.0 33 ................................ TAATTTAACAATAGAGCATATAGAAACTAATTC 9066 32 100.0 34 ................................ TAAAAGACTTAACAGGACGTGAATACCCTGCAAT 9000 32 100.0 35 ................................ AGAAGTGAAAAACAAGCTATAAAAAAATAGCGCAA 8933 32 100.0 34 ................................ TAGCATCTATCCGTTATGCAGTAAGTAGATATGG 8867 32 100.0 35 ................................ TTGTTCTCCGTCCTCACCTTCTGTTAATGCGATAG 8800 32 100.0 33 ................................ AATGGTAGGCCTGCTGAAATCTTAACAGGGTAA 8735 32 100.0 33 ................................ TATATTATCAATTGTGAATACTCTTTTTGATCC 8670 32 96.9 33 ..................T............. CAATATTGCAGAATGTAGAATTTAAAGTAAACA 8605 32 100.0 35 ................................ ATCCAAGGGTATTACCTGAGAGTGTTAAAGATATG 8538 32 100.0 33 ................................ ACTGTTTTTTTTAAACAAGTCCAGGAATCCTAT 8473 32 100.0 33 ................................ AAGGATTTTGGAAAGAAAATAGCACCGTAATTA 8408 32 100.0 35 ................................ TACCACAAGAGGATTTTTAGTTAAGTTCGTTGCCC 8341 32 100.0 34 ................................ TAAATTAGTAGTGTCTATATGCTCGCTAATGGAT 8275 32 100.0 33 ................................ AAACCGTGCCTTTGATACCCTTTGACCTTCATA 8210 32 100.0 36 ................................ TCTTTTTTGTTGTTATGGATTGGATTACAGGAGTAC 8142 32 96.9 0 ..............................C. | ========== ====== ====== ====== ================================ ===================================== ================== 48 32 99.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AATATCCACCATTTTTATGGAAGTAGGTGAAGTGATGCTAGTAATAATCACATATGATGTTAGTACGTCAAGCAATGGAGGAACAAAAAGGCTTAGAAAAGTTTCGAAGGCATGCCAAAATTACGGTCAACGAGTACAAAACTCTGTTTTTGAATGTATTGTAGACGCTACACAATATACAATATTAAAACATGAATTAGAGAAACTTATTGACCCTACAAAAGATAGTCTTCGATTTTATAATTTAGGTAATAATCATAAAGCGAAAGTGGATCATATTGGAATAAAAGAATCTATAGATTTAGAAGAGCCATTATTATTTTAGTTAATGGTGCTAACCCTAAGCGCACATGAAATGCATAGGGGGTTAGCACCAGAAAATAGACTACTAATAGATAAAAAACTGGAAAATAGTAAGAATAAGTTATGTGATATAGTATATTTTTAGAAGAATAGTATTCTTTTGGAATATATGTTCTTGTTTTTTAAAGGAATTCGCT # Right flank : TTTTAGTACAATGTAACAGTATCCTTTATTTCCAAATGCGTGGTCTAACTCCACCGTCTTTAAACGGTATCCGCTTTAGGCCTATCTTTTAATGTCCATAATTAAGTTATAAGGTGAAAAGTATGGATGGATATAAGAAGTATAGCCATGCAGTATATGATATCTAGTACTATGTAATCTGGGTAACCTTTGATATCGGTTTATGGGGAATTATCTTCGGTATTTGTGGTCACTTAGTTTTAAATATACAGTGAGAAAATAAATAAATGGGAAAAGACTATTTTCTCCCATTTATTTATAAGAATACATTGGTAGTTGTAAATAGTAAGGTAAATAATAAGGTAAATAATAAGGTAAATAGTAGCTAATGATACAAGAAGGATGTTTGTTGACGATTAAGAAAGCACCAATCTTTATTCAAAAAGGAGGCACATCTTTGAACTGTTGCTGTGATAGTGGAAAAACAAACGATTTAAAAATCGAAGGTGATGTAGGAGCAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 20046-20803 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDQL01000047.1 Virgibacillus sp. SK37 strain DE0495 NODE_47_length_26346_cov_82.847202, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20046 32 100.0 36 ................................ TATCTATTACAATACATCTTATCCAATAAGCCTATA 20114 32 100.0 33 ................................ TTTAATAGAATCGGAAATTTTCACTTGATACTG 20179 32 100.0 34 ................................ TGCTTTGGAATCTGTTAAAGGAACATCATTCGGA 20245 32 100.0 34 ................................ ATTACGGAACAACTCCCTTTTGCCGAATCCATCG 20311 32 100.0 33 ................................ TGATTATGTATCGGATATGGTTCAAAAAGTAAA 20376 32 100.0 34 ................................ GCAGCGGTTGCCATTCCGTCTATATCGAAAGTAA 20442 32 100.0 33 ................................ ACTTGCATTTCCAGTGATAATATACTCATCAGC 20507 32 100.0 35 ................................ AATCCTCAACATACTCCCACAATTCATCAACTGTA 20574 32 100.0 36 ................................ TCGACTAACCATCATCGAAGAAAACGACGTAGAACA 20642 32 100.0 33 ................................ TAAGATTGTTGGTTTAATCATTCCGAATCACCA 20707 32 100.0 33 ................................ TCATCAAGCATGAGAAGTTCTACCACAAAGCGG 20772 32 93.8 0 ..........T....A................ | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.5 34 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : CTGTATACTTTCCCAAGTCATGAAGCAGGCCTGCTAAACCAGCAACATGTGTAAGTCCTAACTTTCCGCCAAATACCTCAGCTAAATGTTTAACACCATTTAAATGCTCGGAAACGGTTTGAATTTCCTTATCACTTTCACGCACATGGGCAATATAGACCATTTTAAACCTCCTTTAATAATTCCATAAATAAATAGTACCACTAAATGGATAAATTAACAGTATTTGGTTACTAAATTTTCACATTATCGTATTTTAATCTATTCCTATGAAATGCTAATAGTATGTTTGTATAATTTTGCTAGGGAGGTCGTTATTATTTTAGTTGTGGTGCTAACCCTATGCACACATAAAATCATTAATAGGTTAGCACTAAGAATAGCCTCGTTATATGTATTTCTTTGTGATATGATGTGTTTATATTATAAAAGATTACATATTTTTACCTAGAATATATCTTTTTTCCAAATGCACGTTCGCATTTTGGGCGAAATTCGCT # Right flank : TGGCGTGTGCCCGATAGCAACGTATCGATAGATAAATATGATTTTTCAAAAAACGTCAATGGTATACTGAGGCCACTAAAAAGTGTCTTCCTTTAAAAACTACCTAACACTTTTTTAGTGGCCTTTGGTATTTGATATTCCTTTTCACAACATTCATCCTACAGACAGTATATTTTCATTATAAAAACCTCGTGTAACTCGGGATATAAGAGATAACTAAAAGCATATTATCCTTCATCAAAGGTTAAAAGTTGAAGAAATAATATTCACCTATTTGATTACTTTTATCGTGGATTCATAACCTAATATACTAAGCCAATAAACATATATAGCAAAAATTGACCGATGTAATGGGTCCATTTCATTACCGCATTCACATCAGCCAATTAACTACTTAATTAACCTCTAACTTTCTTACCTTAAATTTGAACAGTACTATTCCCTCGTCTCAACATTCCTTCCCTCAAAGTTATCAAGCAATGCACGCACTTCATCTGTTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //