Array 1 2855590-2853179 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024780.1 Pectobacterium brasiliense strain BZA12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2855589 29 100.0 32 ............................. GTAGCCAATGCCCTTACGGTATTTGCTCACAT 2855528 29 100.0 32 ............................. CGCGCACAGCTGGCCGGCGTTGCTCAATCATT 2855467 29 100.0 32 ............................. CGCCCGCGCCTGGGTATTTACAGGAAAAGGAC 2855406 29 100.0 32 ............................. GATTTCTCCCTGACGCATAGCAGTTTCAATAG 2855345 29 100.0 32 ............................. CGGTTGGCTCGATCGTTACCCCTCCCCCCCAG 2855284 29 100.0 32 ............................. TCACCGGGGACGCTGCGTTTAAACGGAATCTG 2855223 29 100.0 32 ............................. CGTGAACTCAATTTGCGCGGTATATGGCTACG 2855162 29 100.0 32 ............................. CCGGTGGCGCTGCTGCTCGTGAGTATCTGGAA 2855101 29 100.0 32 ............................. TGGTGAAGATTCCTCTTGAGAAGCCATTAACC 2855040 29 100.0 32 ............................. TGGACTGAATAAAACCCAAGATGAAGAGTCTC 2854979 29 100.0 32 ............................. CTACATGCGCCGCGAACTGAGAGCGATGAAAT 2854918 29 100.0 32 ............................. GCCATCATGCCCATACCCGCCAGAGAGCCCAG 2854857 29 100.0 32 ............................. CTCATTATTCCCGCGACCGTGGCCGGATATGG 2854796 29 100.0 33 ............................. CGGTTCAGACGCCTCATGATCGACGGCATTGAT 2854734 29 100.0 32 ............................. AAACACAGCGAGAAGAAAGGATGAGTGACAAG 2854673 29 100.0 32 ............................. CAAATATAATGGCTCGTACTACATGTGCCAGT 2854612 29 100.0 32 ............................. TATCACGTATTTTTGAAGAGCCGGAAGACCTC 2854551 29 100.0 32 ............................. GATTCATACGTAACGCTGTTGCAGTTACACGT 2854490 29 100.0 32 ............................. TATCACGTATTTTTGAAGAGCCGGAAGACCTC 2854429 29 100.0 32 ............................. GATTCATACGTAACGCTGTTGCAGTTACACGT 2854368 29 100.0 32 ............................. TGCGTTACACCACGCGGGGCGAGAAACTTTTT 2854307 29 100.0 32 ............................. CTAAAATTTGGTGGCCCCTGCTGGACTTGAAC 2854246 29 100.0 32 ............................. GAAAATTTACCCCAAAATAAATTAACCCGTAA 2854185 29 100.0 32 ............................. TTGCCGATCCCTTTGCTGTTAGCCAGCTGTTG 2854124 29 100.0 32 ............................. ATCTATACGATAACGCCGAGAATCTGGATGTT 2854063 29 100.0 33 ............................. GATTCCTTCGGTGGGTTACGGGGGACGTTCTAC 2854001 29 100.0 32 ............................. AATTAATCGCTGCAATGAGTGGGCGTGGGCTA 2853940 29 100.0 32 ............................. TTGGGATGGATATTAGCGGTTTAAAATCTGGT 2853879 29 100.0 32 ............................. CACAGCCGGCAGATTGTCGTACGCAAACTTCA 2853818 29 100.0 33 ............................. TTTATTTAGGGCATCGAGCGTTTTAACGTTTGC 2853756 29 100.0 32 ............................. TAATATTTCTGAGGTTGGTGCTCTTGTCTTCA 2853695 29 100.0 32 ............................. AGTGGATCCATTGGATTATGGAGCGTAGGCAT 2853634 29 96.6 32 ..............G.............. GTTGAGGATTTCAATGACTACACCGTTTTTAC 2853573 29 93.1 32 .............T.A............. TTTTTGACGCCGTACAGGGTATCGCCTTCTAT 2853512 29 93.1 32 .A..........T................ CGGTCTGAATCAGACATCATCCAGCACCTACA 2853451 29 93.1 32 ........T.T.................. TATTCATCCAGATACAGGTTTCCAGTGTAGCT 2853390 29 96.6 32 ..............G.............. TAAACACGAAAGTCATCGGGTAATTGCGTCGA 2853329 29 93.1 32 ............TT............... AAAAACAACTTTGGCGTCGTGCTGCCCGCCAA 2853268 29 96.6 32 .............T............... ACGCCTTGAAGATTGAGAGCGCATTACTGAAC 2853207 29 93.1 0 A..........................T. | ========== ====== ====== ====== ============================= ================================= ================== 40 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAGCCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGGTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTAGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTAGTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCACGGAACCAAATCCCGCCTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCCTTCACCGTCATGGTGATGTGCGATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGTGGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCAGAGCTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAGGGTTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGAAGTATTCCGCCTTCCAATGTATTCCAGCCGATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4210799-4212450 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024780.1 Pectobacterium brasiliense strain BZA12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4210799 28 100.0 32 ............................ TCACAGCGGGGCGCTGCGGCGCGGGATGAATC 4210859 28 100.0 32 ............................ GGGAAGAAGCCGCGCACAAGCTGGTAAACACC 4210919 28 100.0 32 ............................ GTGAAAAATCGCCACGCCAGACCCGGAACGCG 4210979 28 100.0 32 ............................ TCGCTGCGGCTGGCTTCATAGGTTGTGCGGTT 4211039 28 100.0 32 ............................ GTCACCACATAGCACGCCGCCGGACAAATTCG 4211099 28 100.0 32 ............................ GCATATGCCAGGCAAATCACCGTTCACCATCA 4211159 28 100.0 32 ............................ ATCGACGTCCATTGAGCGTTCCCAGTGCTGGC 4211219 28 100.0 33 ............................ GTTCTGGATCGCCGCGACATTCTGGATTATGTC 4211280 28 100.0 32 ............................ GCTGGAAATTGTGGTTTAGCGATGGATTTCGT 4211340 28 100.0 32 ............................ ATGAACGCAATTTTATCGGCCTCTGTCCCGAC 4211400 28 100.0 33 ............................ AATCATCAATTTGCTCAAGCGTTAGGGGTTCAT 4211461 28 100.0 32 ............................ CGCCAGGCGGGGGAGCTGCACCGGACAAGGGG 4211521 28 100.0 32 ............................ GCTGTTCAGGGGCAATTCGTTTATGTCGAGTC 4211581 28 100.0 32 ............................ GTAGCGTCATATACTGCTCAAGCTGATTGCCC 4211641 28 100.0 32 ............................ ATGACGCTTATCACAGGCTACAGCATTCCATT 4211701 28 100.0 32 ............................ CGTTATGGCCATGCGCCCAGTCGTGATCAGGT 4211761 28 100.0 32 ............................ GAAAAATCAATCTGCCACGTCTCAGCCGATAC 4211821 28 100.0 32 ............................ TTTGCTCTGGTCACGACGTAGCTCTCACTACC 4211881 28 100.0 32 ............................ GCTATCCGACTGACTGCATGCGTGTGATTGAG 4211941 28 100.0 32 ............................ GGATACGATATATTGCCGGTCACGCAGAACAG 4212001 28 92.9 32 ...........T.....T.......... AGATCGGTGCAACTGACATACAACTGCGTTGA 4212061 28 96.4 32 ...........C................ CACGAGGCAGTTATCTTTCGACACTGCCGCGA 4212121 28 96.4 33 ...........T................ CTTCTGCCAAATGACAGAACGGTATTTATCAAT 4212182 28 96.4 33 ...........T................ GTGGAAAAAGTTGTCGGTCATGTATTGCCGCTT 4212243 28 100.0 32 ............................ CGCGTTAAACGGATTCTAAACGCCAGCCTAAT 4212303 28 96.4 32 ...........T................ GGACGAAATCGCAGGACTATAAATCAGGCCGT 4212363 28 92.9 32 ...........C.C.............. AAGAGATACAAGGATGTTGCGGCGGTATTACC 4212423 28 75.0 0 ...........C.C......T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 28 28 98.1 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATATATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CCGGTTTTAAGTGCCATTATCTGGCTATTATCGAGGTAGCACTATCGGCAGGTTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGAGTTTCTTTTTGGGGAATGGAAAATTGCGGATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAGTGAAGCGACTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCCAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4219449-4218519 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024780.1 Pectobacterium brasiliense strain BZA12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4219448 28 100.0 32 ............................ TGTCCGGCGCGGTTCGTTGACAGATTGACGCC 4219388 28 100.0 32 ............................ AGGTTCCGGTAGTTGAGCGTCATATCGGACAG 4219328 28 100.0 32 ............................ AGTACCAGTCAGTACCTGCGTGTCTACGAACG 4219268 28 100.0 32 ............................ TGGTCACGCTAGGAAGTACCGTATCCGCAGCA 4219208 28 100.0 32 ............................ GATCGCAGGGCTGGATCGTGAGCGTCAATACA 4219148 28 100.0 32 ............................ ATCGGTAAACGATAGTGACGCAGAGGAAGCAA 4219088 28 100.0 32 ............................ TGGCTACCCGTCAGATTCAGGAAAACACCCCT 4219028 28 100.0 33 ............................ CTGTTCGACCTTGACCAGCTCACGCTGGAATAC 4218967 28 100.0 32 ............................ ATGCGTGGCCAGCCTTCAATTGTTTCAAACTC 4218907 28 96.4 32 ...........T................ AATTAGCGAGATCGTCGGGATGCCGCAGCCGT 4218847 28 96.4 32 ...........T................ TCGACCTGAGAGGTACCGGCATCACCAGTCTG 4218787 28 96.4 32 ...........T................ AGGCGCGAGCGACGGCGACGGATGATATCGAG 4218727 28 96.4 32 ...........T................ ACGCCGGATACTCGCCACGACTTCCCGCAAAC 4218667 28 96.4 32 ...........T................ CAATTCGCGAAACGGGTCGATGCGTTGTTATT 4218607 27 89.3 33 ..........T-..G............. ACACGGTCACGAATAGTGATCCGCATGATTGGT C [4218593] 4218546 28 82.1 0 ...........A.C....C.T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 97.1 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATTCATAGCATATGCAGATACCTGACATAGGCCTATCATCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGGTCTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATAAAACGCTCCCAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTGGCTGTGGCAGATCTGCCTGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAAAGCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //