Array 1 29065-29391 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGRQI010000010.1 Pasteurella atlantica strain NVI-9258 NODE_10_length_82538_cov_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29065 28 100.0 32 ............................ CAGCCTTTTTGAAAGACTGGATACTTGGGAAA 29125 28 100.0 32 ............................ GCCTCGAAAGCACCCTGCGGTAAATTATCACC 29185 28 100.0 33 ............................ ACTGGGTCACCACATTTTTAAAAGTTTGCGAGA 29246 27 82.1 32 A..-.......A......A.......G. TTTTTTAGACAGGGCATGCCCTGTCTCTACGG 29305 28 71.4 32 .A.T..T..T.AA..A..A......... TATTAAAGCAAAATTTTCAAGTATAAGAAACT 29365 27 75.0 0 .G.T....C..AA........-..A... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 88.1 32 GTTAACCATCGTGTAGATGGCTTAGAAA # Left flank : ATCTCTGAATTAAATGATACAGAACTTCAAAAAGTTTATCTTGCGGTATCTTCTAAAAAACGACGCTAAGGTATATAATTTAAATGCTATTTAAACGCTTTTAAACGTTCATTCTAATTTCGCAGTTTTTGCGGTTTAAATTTAAGGTTTTTATTATTTTTTCGCAGTTTTGGATTTTTTGATGTTTCAACAATAAAAAAGGGGCAAAACTACCGCAAGCCCCTTTCTTTCTATGTTTTTACCCACTAGATCCCGTTAATTTTTACCAATTCCCACATTTCTTTTATTTTCTTAGTTTTAATGATCTTCTACAATTAGGCTATCAAACACCTCTTGAGGTAAAATCTAGATTTGGGTGCGTTGCACTTCAAACTTGAATCCGCCCGATTTTAAAATCATTTTATTATCAATAAGTTACAAAAACTATCAAAAAAAGGGTATTTTTCTAATTTTTCATTTCAGGTATTGAAAAATCAGGGATTTATGAATAAAATTCCTAG # Right flank : ACGTAGGAACAGGGCATGCCCTGTTCAGCTAAACCACCACATAATCATTTACAATTAATTTACACCTAAAAAATGACTCTCTGTCTCTAAAAATTTATTATTAAACCCTATTTAAATGATACCAGTGGGAAAGTAATACACCAGTATTCACCGCAACATTTAAACCATTCTGCAAAGGATTAACAACTGAAAGCTGTACCGTAATATCTTCAGCATATTCAATCTCATTAGATATTACTTCACTTAATACAAAAACAATTTTATTACCTAAATTAATTTTAGGTAAAAGTGAGGCTTTTTTACTATGTGTTAAATGCACAATTTGATAGCCTGCTTTTCTTAATTGAGTAAAAGCGATCTGTTTATGCTTAGTTTCTAGCATTCTAATAAACTCAAATCCACCCTCAGCAACACGTGCTGCACTACTTGAATTGAGCTTATCAGTATTCTCGGTAATCACACCTTTAATTCCATAAAAGCTACAAGTTCGAATAATACCG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14745-14536 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGRQI010000001.1 Pasteurella atlantica strain NVI-9258 NODE_1_length_164677_cov_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14744 28 100.0 32 ............................ CGATGGTTCTAAAGAAGAATTGAAGGGGTGTA 14684 28 100.0 33 ............................ TGAGCGTTATCAATTAGAACTGGCAAACCCACA 14623 28 100.0 32 ............................ AAGAAAATTATCATTGGTGTTGGAGATTGCCT 14563 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTTAACCATCGAGTAGATGGCTTAGAAA # Left flank : TATGGAGATAGAATTACCAACTCAATGGAAAAAGCCATCAGCGAAACCCAAAGACGTAGAGCCAAACAGCAAGCTCACAATGAAAAACTGGGTATTACCCCACAAGGTTTAAATAAAAAAGTCAGTGAATTGCTAGATATTGGGCAAAGTAATAAAACAAAACGAAATAAAAAATCTGCAAAAGTAGAAGAAAATCCTACCGCTTATATTCCAAAAACTCGCAAAGCACTAGAAAAAGATCTCAAAAAATTGGATACCGAAATGCGAGAGTTCGCTCAAAATCTTGAATTTGAAAAAGCCGCTGCCACAAGGGATAAGATTAAGCAGTTAAAAGAGTTTTTGTTGATGGTGGATTGATTGCATAAAATACCCTTTATTGTTGACTATTTTAAAATTTCTTTATTATCAATAAGTTACAAACCCTGTTAGAAAAAGAGTATTTTTGCTATTTTTTCACTTCAGATATTGCAGAATCAGGATTTTGCGAATAAAATCTCTAG # Right flank : GAGTAGGATATGAAAAATCACTTACATAATTCAAAACTCAAACAGATAAAAAAACATTCTTAATAATAATCTTAAAAATACTATTGAATTTCACTTTAAAACTGCTTAAAGTTACGCTTAATCACATAGTAATAAATAGAAAAGGAAAAAATAATGGATCTTAGTTATATGGCAAAAATGCCACAATCTGAATTTACTGCTCGCCGTCAGCGTGTATTTGAACAAATGCAGGATAATTCCGCATTAATCGTTTTTACAGAAACAGAAAAACGTCGTAATAACGATTGCGAATACTTATTCCGTCCAGATAGTTATTTTTGGTATTTAACAGGCTTTGCAGAACCTCAATCGGCTCTACTTTTAATTAAACAACAGGGTAAAATGCAAAGTATTCTTTTTCTACGTGAAAAAGATCCATTAATGGAAACGTGGAATGGTCGCCGTTTAGGTACTGAAAATGCACCACAAAGCTTAGAAATAGATGAAGCTTATAACATTGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCATCGAGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 67731-67998 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGRQI010000001.1 Pasteurella atlantica strain NVI-9258 NODE_1_length_164677_cov_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 67731 28 100.0 32 ............................ CTTATTTTAGAAATTACAGAATAAAAAAAGAA 67791 28 100.0 32 ............................ GCTATACTGAGAAAACGGCGATCTTTCGATCT 67851 28 100.0 32 ............................ TCTATTCTAAGTTTCCAAGAGTTGTTTGCGAC 67911 28 100.0 32 ............................ CAATATCCATCGTATAAATCACGCTTTGACAA 67971 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTAACCATCGTGTAGATGGCTTAGAAA # Left flank : TTAAAACTGATAGATGATGTAACACTTAGTTATTATCTTACTGGCGAAAATCATTTTGTGATAGGTATAGGTACTAAGGATCTTTATTATTATGAATTAACCTTTAAAAATAAAACAATAAAGTTTAAGAGCGTAGTTCCCGTTGTCGCACTTCCCGACAGCCCGAATTATAAAAATCTCATAGAGTACAATGGCAATACTTACCATTTAGAGTAAAGCAACTAAAAAATACGCTATAAAATTAACGTTACAGCGTAATGATGAAATGGAAGAATATATCTAGTTTTTGGTAAGGTAATGAAGATTTAAAAGGATATTTGCAAATTTTTGATAACATCATACCGCTTGTATCTCCTATTTACTCAAAATACCCTTTATTTTTAGCTGTTTTAAAATCACTTTATTATCAATAAGTTACAAAACCTGCTAAAAAAAGGGTATTTTTGCTATTTTTTCACTTCAGATATTGCAAAATAAGGGATTTATCAATAAAATTTCTA # Right flank : AACTTTCACAATCTTTTACGGATGCGTTTAAAAAGCAACTTTCTAACTATCCGCAACAAATTCTGAAACATTTAAAAGAAAATAAACTTAGATGTGTACTGTTACGCTTAACGCAACAATCACAGCCACTTCTCACGGTTTAAAAGCTGGAGATTGTATTAAAATCAAAGAATTAGGTTCAATAAGGGGACTGCTTAGATTCAATAGCGAAGTGCAACATTTCGGCAATAAAGAGATGATTATCGGACAGCTCAAATATCACACTTGCTCGCTTTAATAGACCGAGACAGCAAAAGCGAACTATCAAAGCTACAAGATTTTGGAATAAATCAAGTTTTGAGAAAGATGAGGACGAAAATGATGGTAGTGCAGAGTTTTTAGCCAATAGATAATCAGTAAATTGACTAAAAAAGCAATTAAGTATATACTTTGTATAAATTAGATACTGAAGGGGAATTTTATGCAAATTCAAATTAAAAAATGGGGTAATAGTGCAGCGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 89536-89743 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGRQI010000001.1 Pasteurella atlantica strain NVI-9258 NODE_1_length_164677_cov_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 89536 28 100.0 32 ............................ TTGTGAAAGTACTGTATCACGCTTAATTCTTG 89596 28 100.0 32 ............................ ATTACAAAGACAAGCGAGGGCATTTTAAATGT 89656 28 100.0 32 ............................ AACGGCGGGGCGTTTATTTTAGCACCGCAGAA 89716 28 89.3 0 ..T.........A......A........ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTGAACCATCGTGTAGATGGCTTAGAAA # Left flank : CTCCAAGTTTTGCCGATATTTTTTATGGCAACAGCCTAAATAATCAGCTGCTCCCCGTTAAATTAACCCATCAAGAAGTCGATGATTTATTTAATTATGTGACTAAAAATAAAAATGCTAAAATTACCGTTGATCTAGAAAATCAAACCGTGACAGCAGGAACACTACTCTATCATTTTGAAATTGACTCTTTCCACCGTCACTGTTTACTTAGTGGGTTGGATAGCATTGGCTTAACGTTACAGCATAACGATAAAATTGAAGAATATGAAAAAAATATCCCTAGTTTTTTAAGGTAATAGCAACTTAAAGTAATATTTGCAAATTTTTGATAACATCATACCGCTTGTATTTCTGATTTATCAAAATACCCTTTATTTTTAATGGTTTTAAAATTACTTTATTATCAATAGGTTACAAAACTAGCTAAAAAAAGGGTATTTTTGCTATTTTTTCACTTCAGATATTGCAAAATAAGGGTTTTATGAATAAAATCTCTA # Right flank : ATAAAAAAAGGTCGCCATTATGACGACCTTTTTTATTATTCTGTTTTATCAATTGGTGGAAAATCTCGTTGTACTTCACCTGTATAAATTTGGCGAGGACGTACAATTTTAAATCCATCTTCTTGTTTATACATTTCTTTCCAATGTGCTATCCAACCAACCGTTCTTGCTAATGCAAACATTACCGTAAACATTGAGGTTGGAATACCAATCGCTTTTAGGATAATGCCTGAATAAAAATCAACATTTGGATAAAGCTTGTGATCAACAAAATACGGATCTTCTAGGGCAATACGCTCTAATTCCATCGCAACATCTAAAATTGGTGTAGAAATATTAAGTTCACTTAACACTTCGTGACAAGTTTGACGCATTACTTTAGCTCGAGGATCATAACTCTTATACACACGATGCCCGAACCCCATCAAACGGAATGGGTCATTACGATCTTTTGCTTTGGCAATATATTCAGGAATACGATCTACAGTACCAATTTCTTC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 95520-95787 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGRQI010000001.1 Pasteurella atlantica strain NVI-9258 NODE_1_length_164677_cov_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 95520 28 100.0 32 ............................ AATATGGTATTTCACGTTTACTTGAAAATATA 95580 28 100.0 32 ............................ TTTAGCCCTAAAAACCTTAGAAACATCACGCA 95640 28 100.0 32 ............................ TTTTTGTCCCAAGAAAGTAACTGTAATTGAGG 95700 28 100.0 32 ............................ TTCTTGCAGAAGTTGCCACTGAAACGGCTCGC 95760 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTAACCATCGTGTAGATGGCTTAGAAA # Left flank : CAACGGTAGTTTCAACTTCAACACGTAACTTCCCTAACCGATTAGGACAAGGTGCAAATGTTTACCTCTCTTCTGCAGAACTTGCTTCTGTAGCCGCCATTTTAGGTAAATTACCAACCCCTGAAGAATATCAATCTTATGTAGCAAATTTAGATAATGATAAAGAAGATACTTATCGTTATTTAAACTTTGATAAAATAAGCAGTTATACCGATAAATCAAATACGGTTATTTTCCAATCTGAAGTATAATCTCTCTCAATAAAAGCCATATTTTTCATAAAATATGGCTTTCTATTTCAAATAGTTGCAAATTCTAAACAAAATCATACCGCTTGATCATTAAAATATTTTTATAGAACATAAAAACACCTTTTATTTTTAGCTATTTTAAAATCACTTTATTATCAATAAGTTATAAACACACTCAAAAAAAGGGTATTTTTACTATTTTTTCACTTCAGATATTGCAAAATAAGGGATTTATCAATAAAATCTCTA # Right flank : ATCTTAGTAAACAAACTCGCTTTAAAAGTAATAGTTAACCATATGTACGTTGTACAGTGAGGATACATAAAAATCTTATCTCTATGCTTAGAAAATAAGAAAGATAAATTTGTAAATTTATCAAGTAAAACTTAAAAACATCACTAGAAAAAATCTCTATTTTCAGGTATTCTTACACCAATTTTATTTTAATGGTAGTGTTAATAAAACTACCCATATCTACATCTAGGAGATTTTATGAGTGAAAAGTACATCGTCACTTGGGATATGTTCCAAATGCACGCTCGCAAGTTATCAGAAAGGTTACTACCTGCATCACAATGGAAAGGTGTTATTGCTGTTAGTCGTGGCGGATTATTTCCTGCTGCAGTTATTGCTCGTGAACTTGGACTTAGACACGTAGAAACAGTATGTATTGTAAGTTATGAAGATCACTATAAACAAAGTGACGAGTTAAGAGTACTACACGCACCAGAAGGTGATGGAGAGGGTTTTATTGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6415-5388 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGRQI010000008.1 Pasteurella atlantica strain NVI-9258 NODE_8_length_100684_cov_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6414 36 86.1 30 .......T.......T......T.T.G......... TTCTTATCGAAAGTTTGAGTGTTTATTTTA T [6397] 6347 36 97.2 30 ...........T........................ ATAAACGGCTTTCAGATGGCATTGTTCTAG 6281 36 100.0 30 .................................... CAAGCGTGGTGTGAAGTACATCGTGATGAA 6215 36 100.0 30 .................................... TTGCTACCATTTCTAATTGCTTGTTTCTGT 6149 36 100.0 30 .................................... TTTTAGAAGTGAACAAACAACAGATGAAAT 6083 36 100.0 30 .................................... ACAGGGTGTGCGACACAGCCACGAAATATA 6017 36 100.0 30 .................................... GATAAAACCGCTCACGTACAAACAGCAAAA 5951 36 100.0 30 .................................... AAGTGGCAGATGCAGCACACGAGGCGTTAA 5885 36 100.0 30 .................................... ATATTGCAGCAGTAGTATTGCCATCTTGTG 5819 36 100.0 30 .................................... CTAGCCCATCATTGATACTTTTAGCCAAAA 5753 36 100.0 30 .................................... TTGTGTCATTGTATTAATCCTCTGTATTCT 5687 36 100.0 30 .................................... CTTAAAGAAATGAAATAATCTTCTAACGAA 5621 36 100.0 30 .................................... CGCTGATTGCTTGTGTCGTGACATTTTTTA 5555 36 100.0 30 .................................... AGATATTGCGGATTATGCAATTTTAGGCGG 5489 36 100.0 30 .................................... TACATCATAAAAAATTACCCCTTTCTACCA 5423 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.0 30 GTTGTAGCTCCCTTTCTCATTTCGCTATGCTATAAT # Left flank : AAGAAAATTTATCAATCTACGACAGAAGATGAAGCCTTGCAGGAATTAGAGAATTTTGCGAATACTTATGACGATAAATATCCGCAAATATCACGGTCTTGGTATAAACACTGGGATAACCTGAATACCTTGTTTAACTACCCTGAGGATATAAGGAAAGCCATTTATACGACTAATGCTATTGAGTCTGTAAATAGTGTTATTCGCAAAGTCATCAATAAGAGAAAATTATTTCCAACGGATGACTCTGCAAAAAAAGTCGTTTATCTGGCTATTCAAAATGCCTCTAAAAAATGGACAATGCCAATTAGAGACTGGAAATTAGCACTCAATAAGTTTATGATTGAGTTTGATGATCGCTTAGCTGATTATCTTTAACTAAAGTGCAGTTACACAGTTTAGGAGACAGTCTCAATTCTGTGTCGAGACTAGCTATTTTTATAGTCTCTTTGAACTCTTTTTTCATTTAACAGGAGACAGTCTCTTTAACATTGGAAACA # Right flank : CTTGGACATCTAAAGCCTTTTAAAATAAGGCTTTATTACTATTATATTCATTATAAAAAACACGGATAAATAAGTATTTATCCGTGTTTTTTATGATTTTTTTCTAATAAAGATCTGGATATTTAGCTATAAAAAATGCAAAAAATAAAAATTTATCAGAAATGATTGTTTAAAATAACAGCATTTGATTTGCGTTTACTTTTTTTTCTTGTGTTTTCAATTCTCCTAATAGTAGTTGCATACTAGCAAACTGTTTTTCTGTCACCTCTAAGCAACGAATAGATCCCTCTTCAGGCAAGTTTTGGCACAATCTTTTATGATGTTTGGTTAATGAATCTCTTCCTCTTACTATACGAGAATAGACTGATAATTGGAGCATTTGATATCCATCTTTTAATAAAAATTGACGGAATTGATTGGCAGCTCGGCGTTTGGATTTAGTTGTGACGGGTAAATCAAAAAAGACTATTATTCGCATAAATTTAGCCTCACTCATAGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCTATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //