Array 1 45173-46783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENPU010000013.1 Campylobacter fetus subsp. venerealis strain SA21-221439 UK9_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 45173 30 100.0 36 .............................. CCGTAAGCTACATTGTAAGCTAAGTCTTCAAAGACT 45239 30 100.0 36 .............................. TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT 45305 30 100.0 36 .............................. GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT 45371 30 100.0 35 .............................. CGGGGAGCAACGTTAGCAATCTCATTTCCGTCCAT 45436 30 100.0 36 .............................. TGGGGATTCGATGAAATTTTTAACTATATAGCATTC 45502 30 100.0 36 .............................. TTTTTATAAGGCTCATTTTTGAAGATATTATGCTGC 45568 30 100.0 37 .............................. TCCAGAGCTAATAAGGGATTTAGAGCAGCTAAAAACT 45635 30 100.0 36 .............................. CGCAAAAAGAGTTGAAATATATAGATAATAGGTTAA 45701 30 100.0 35 .............................. AATCCAACTTAACAAAAATGTTATATAAAATCACC 45766 30 100.0 36 .............................. TAAACTATTTCGTTATCCTGGTTGATACCGCTTAAA 45832 30 100.0 36 .............................. ATGAGTTTAAATTTGATAGATCTGAAAAGATTATTC 45898 30 100.0 36 .............................. CTTGATACTTTTTGCTTGATTAGCTTTGCATTTTTA 45964 30 100.0 36 .............................. TCCCCGTTATCTACCTCTGGCGCCATGCTCTCTCCG 46030 30 100.0 35 .............................. CCTTCTGCGATATATTTGATGAAAAAACAGAAAGG 46095 30 100.0 36 .............................. TTTGAAGTGCACGACGCTATAACTAGAACACGGATC 46161 30 100.0 36 .............................. ATTAAAGCCGAATTACTCCCATTTTTTTTGACTTGG 46227 30 100.0 36 .............................. TACATCTTTTATCTCCTCTTTGTATTCCTTTAGCTC 46293 30 100.0 36 .............................. TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC 46359 30 100.0 36 .............................. TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA 46425 30 100.0 35 .............................. AATCCAACTTAACAAAAATGTTATATAAAATCACC 46490 30 100.0 36 .............................. TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT 46556 30 100.0 36 .............................. AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT 46622 30 96.7 36 .........................T.... CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT 46688 30 100.0 36 .............................. CATCCTCCTTTTAATTTATTACATTTAAACAATTTA 46754 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 99.9 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AATATAATTTTTTGTATAATCCAACTTCTATTTTATAGTTATTTATTACTCTAAGCCTAAATGGTGAAATTGGTAGACACGCTAGACTCAAAATCTGGTACGGGAAACCGTGTGTCGGTTCGAGTCCGACTTTGGGCACCAGGGGTTTTGTATATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCCTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : AAGAGCAAACATGGCAGAGACCTTAAAAGAGAAGTTTAAAGGCGTACTAAGTGCAAATACTAGCTATTTTGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //