Array 1 327-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHT01000001.1 Lacticaseibacillus rhamnosus strain Lrh6 Lrh6_contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 326 36 100.0 30 .................................... AAGAAAAACGTGACTTATACGAGGCTGCGT 260 36 100.0 30 .................................... CTGCTATTGATGGTGCTGACGATCCATTCA 194 36 100.0 30 .................................... AGCTTACCAACGAAGACAAACAAGCCTATC 128 36 100.0 30 .................................... CAGTAGACTTCTCTACAAAGGATCCTCTTG 62 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : CTAAAGGAGAAGATAACCATGAAGATT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 48691-48257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHT01000022.1 Lacticaseibacillus rhamnosus strain Lrh6 Lrh6_contig00022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 48690 36 97.2 30 ..................................G. ACGTTTAGAATGATACCACTTGGATGTTGT 48624 36 100.0 30 .................................... TTTGACCCTGCAACGATGGCAACGACGTCT 48558 36 100.0 30 .................................... AACGTTTCGGTGTTGTATAGCGTGTCTTGG 48492 36 100.0 30 .................................... AGCCCTGAAAGAAATTGATTACGGTGTATT 48426 36 97.2 30 .......A............................ AGGCGAAGAACTGGCGCTGACAGTCGGTGA 48360 36 100.0 30 .................................... ACTCGGGTATTGACAAAGATCGACGCGGCA 48294 36 86.1 0 .......................AA.C....G...G | T,C [48261,48267] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 97.2 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : AGCATAAGAGACTTGTCATCAGTCGCCT # Right flank : ACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGCATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTTTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCATA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //