Array 1 25407-23523 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGU01000009.1 Lactobacillus helveticus strain IMAU30035 Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 25406 32 100.0 34 ................................ TAAAGGGATAACTTTTAAATTTGATAATAGTGAT 25340 32 96.9 34 ....................A........... TGCTTATAAGTGGGTATTATTTATCAATCATATT 25274 32 100.0 34 ................................ AATTAAGTCTAATCATAGGGGCAATAATTGCTTA 25208 32 100.0 34 ................................ CTATTGCACGTGTTGGAGTTTTTCCGTATCTGCA 25142 32 100.0 35 ................................ GATGTGCCCGACTGCTCATGCGTGGTATTGCTCAG 25075 32 100.0 34 ................................ ATTTATCAAACAAAATGTTGATTTAAATTACTGC 25009 32 100.0 24 ................................ ATTCAAGATGAACGCATTAAACTT Deletion [24954] 24953 32 100.0 35 ................................ AGCTAACGTTAGTATGGAAGTTAACGATCCCAGTT 24886 32 100.0 33 ................................ ACTCCCTATGTCGTCCAATACAAGCAGATCTAC 24821 32 100.0 36 ................................ TACCAGAATTGTGCTTGTTCTAGGATACATGGCCTT 24753 32 100.0 35 ................................ ATAACGTAATTAAGGTCAGATGGATCATATTTGCC 24686 32 100.0 34 ................................ TTAGCTTTAGACTGCTGATCCGCTAAGCCAGCCA 24620 32 100.0 34 ................................ TTACGAATCTTAATTGATTTAGGATTCGTATTGG 24554 32 100.0 36 ................................ AATTTAATATTTTGAATTTTCATGATCTTATGAATA 24486 32 100.0 35 ................................ AAAGCAACTTTTAGAAGAAGCTAGAAATGCTGAAA 24419 32 100.0 35 ................................ ACTTGAAAAGCTTTTACAAGATAACGGCAAAATCC 24352 32 100.0 34 ................................ TACTAGGCAATTTGATTGGCGCGACAATTCCTAA 24286 32 100.0 35 ................................ ATTTCCAGATAATGAAGAAGCTCGTCAAAATTATC 24219 32 100.0 35 ................................ ACCAGACTTGTTATCTGCTAGCCTATATGCTTTTG 24152 32 100.0 35 ................................ AGCATCAACGGCTCTAATTATGTCATTGCCGGTTT 24085 32 100.0 34 ................................ AGTTTTGGGCTTGTACGGTGGTGAACTTGAATTT 24019 32 100.0 34 ................................ AGAAGATGGATACAATTTTTAGAAATTCCAGTCT 23953 32 100.0 35 ................................ ACACCATATGTGGTCAACGCTTTAATTGGATTACG 23886 32 100.0 34 ................................ ACTAACTGGAACATCCAAGTACTGTGCGGAAACC 23820 32 100.0 35 ................................ ATCGGCTAATTGCTTTTCAAGTGAATCAGCCTTTG 23753 32 100.0 34 ................................ ACTGAGACGCTAGACGCTATTAGATCACAGTCAC 23687 32 100.0 35 ................................ ATCAAGCTTGCCAACGGGTCGATTTTATTCTGTGA 23620 32 100.0 34 ................................ TTTTGAATAGATGGCATGTAAGTCTGATATAGTT 23554 32 96.9 0 ...........C.................... | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 99.8 34 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : TTTAGGTCCATTGCACTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAATT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //