Array 1 439349-437461 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCGD01000002.1 Serratia marcescens strain 2880STDY5682819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 439348 28 100.0 32 ............................ TGCTGCATCACGAAACGCCGCTGGTGTATTGG 439288 28 100.0 32 ............................ CGCGACGGTCGGCATACCGAACTTGTCCAGGA 439228 28 100.0 32 ............................ TGTTCGGCGGCTCGGCCGGTTTTGCGGTTGGC 439168 28 100.0 32 ............................ TGGCGGGTGAATACGCGCCGCGACTGCGGGGA 439108 28 100.0 32 ............................ AATCAGGGGGCAATAATGGCGACGATTGACCT 439048 28 100.0 32 ............................ ATTACGGCCTGCGTGATAAAGTCAGCCGGAAC 438988 28 100.0 32 ............................ TTTTCATAGTGGTTTCACAGTCCCTTGAATAG 438928 28 100.0 32 ............................ GACCGGAAGTGGGTAAGGTTCGCCTGCGTCAA 438868 28 100.0 32 ............................ AATAATTCAGCAATATCGAGCAGGGGGATTTT 438808 28 100.0 32 ............................ GAAATGCGTGAAAACCGTGGTGAGATTTTCGG 438748 28 100.0 32 ............................ TTACTGGATTATTAATCACCCCGTGGGCGTCC 438688 28 100.0 32 ............................ AATCAATTTTTATCTGAATCAGGACAAACAAT 438628 28 100.0 32 ............................ GGATGAATCGCGGCGTGATATTTCCAGATGAC 438568 28 100.0 32 ............................ TATTCCGAATGCGTTAAAGAGTTGCCCAAATA 438508 28 100.0 32 ............................ TGCAGGACATTGAGAAGGTTCGCGCGGCGAGC 438448 28 100.0 32 ............................ TTCTCATTTTTACCCTGTGCCTGCTGACTGCC 438388 28 96.4 32 ...........C................ GGTAAATCATCCCACTCGCACGTTCGCATATC 438328 28 96.4 32 ...........C................ TCGCCAGTCTTACCGCTGTGCTTGTACCACAG 438268 28 96.4 32 ...........C................ TTATTGAAAAGCCCGCGTTTCGCCGGCGGCTC 438208 28 96.4 32 ...........C................ GTCACCGGCAGGAACGGACGCGGGCGGATCAC 438148 28 96.4 32 ...........C................ AGGACGACCTGAACACGTTTGTGCAGCAAGTC 438088 28 96.4 32 ...........C................ GAGGATTTGGCCGTGTTTGAGCAGACGGTCAA 438028 28 96.4 32 ...........C................ TGTACCGCCGGTGCCGCCAACAGAGGCGACGC 437968 28 96.4 32 ...........C................ TGCGGGCGCAAAACGGCAATCAGATGAACCTG 437908 28 96.4 32 ...........C................ GTTGACCGCCGGTACTTTCACTGCTGGCCTGC 437848 28 96.4 32 ...........C................ ACGGGACTCATGGCTTCAACCAAGGGGGCCAG 437788 28 96.4 32 ...........C................ AGTGGCAAGCAATGCGCGCTAAACTTTCTGCT 437728 28 96.4 32 ...........C................ TAAATGGTGCCAATTCGCAAGTTTGTTACCTT 437668 28 96.4 32 ...........C................ TTGAATAATACGTTTAAGGATTAAAAGATGAA 437608 28 96.4 33 .............C.............. AATTTACGCAGCGGGTTGCCGACTTTGATTTTC 437547 28 96.4 32 ..G......................... CCGCGCTTCGATAGCGGCAAGTGTGGCACCAG 437487 27 82.1 0 T............C......T..-...T | ========== ====== ====== ====== ============================ ================================= ================== 32 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGCTGACGGCATTGGAGGGATTCGGCTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCCCATCCAGGCCGTACCTGCTGAGACGGCGTTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTTGAGCGTATACGCCGCAGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCAAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCTGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCGCTGCTACGGTACCCTGGTTTTAACCCTTTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACTGAGGGATTTGCCTATTGTTCTTTAATAATCAGTTTGTTAGTGATTTTTTTTGTTCA # Right flank : AGGGGGGATAAAAATTTACCGACAGGTGTTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAATGCCAGCGTCAGCTCCCCTTTTCCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGAGGTGTCGGTCATCGTACGCCGCTTTGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 449449-447830 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCGD01000002.1 Serratia marcescens strain 2880STDY5682819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================== ================== 449448 28 100.0 32 ............................ TGGTGCAAATACAGCGAGTGTTGCGGTAGAGG 449388 28 100.0 32 ............................ GCCGGCATAAATCCACTGGCGCAGGCCGTCGC 449328 28 100.0 33 ............................ GCCAGGGCCTCGACCGCATCATGATCGGCTGGA 449267 28 100.0 32 ............................ GTCCGCATTGATTTTCCCGACGGCGCGGTCAT 449207 28 100.0 32 ............................ ATCACTAGCGCATCCAGATTGTGATAGTCGCC 449147 28 100.0 32 ............................ GAAAGCAAATACTGCTGAGTCGGGCCAGCCAG 449087 28 100.0 32 ............................ ACTTAGTGCTGGGTGGGTATGGTGCAAATGCT 449027 28 100.0 32 ............................ TGGTCACCGCCGGACAAGACGGCACGCCCCGT 448967 28 100.0 32 ............................ TATGACACCGACCGCAGCCGCGGCGTCAGCCA 448907 28 100.0 32 ............................ AACAAAACCTACCCGGCGAGAAAGCTGTACCC 448847 28 100.0 32 ............................ AGGCGCACGACAAGCGGGTTTAAAACGATGCG 448787 28 100.0 32 ............................ AGTGAAACCGATTGAAAAGTTTCACGCGAAAC 448727 28 100.0 32 ............................ GTTAGAATATTTGGTGTGAATAGATTGCATGG 448667 28 100.0 32 ............................ ACAAACTCAACCTTGCGCTGACGGGTGTTGCG 448607 28 100.0 32 ............................ AGCCACAACCCAAAATCGTTATCAAGCGCCAT 448547 28 100.0 33 ............................ CGCTGTAGTTCTGCCCATCAAATTTGACACCCT 448486 28 100.0 32 ............................ TTTTTCGCGGGATCATACAAATGCCAGTAAAT 448426 28 100.0 32 ............................ GGGAACGAAAGCACGCTGCAGGCCGCCGCCGA 448366 28 100.0 32 ............................ AAACTCATCGACAACGTTGGCAATTTCACGAA 448306 28 100.0 32 ............................ GGCACAAGAAGAGGTTTTTTGCCTTCTTTCCG 448246 28 100.0 33 ............................ ATGAGCGCTACAACAACCAGATAAGGATCTAAC 448185 28 100.0 32 ............................ AGCCTGATAATTTGTCCAAATCGCCACTAATC 448125 28 96.4 32 ...............A............ CCGGACAGGCCGGCGCAGATCCACAGTTCGTC 448065 28 100.0 32 ............................ GTTCGCGCAAACGGGAAATCGTGATGCAGCCT 448005 28 92.9 56 .........T...T.............. TAGCTGGCGGGTAGTGATTTCGCCGGTATCGGTGCACATGCGTTGGTAGTAGATGA 447921 28 92.9 33 ..T..A...................... CCGACTGCGGCTACGCCTTGTCGTGACCACTCC 447860 28 96.4 0 ....................A....... | G,A,A [447833,447837,447839] ========== ====== ====== ====== ============================ ======================================================== ================== 27 28 99.2 33 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAACGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGTCAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTTGGCAATTCAGGTCATCTGTGGGGGCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCTCCCTAAAGTGCAGAAATGTCACCTTACCCCGTTCCTTTTTGCCGAACCCTTTTTTGAGTGTCACTTTTAATTTATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGGTAGATTCCGGCAGTGATCAATAAGTGGATGACTTTATTTTTCTGATTGATGAATATTGACTCGCTTGCAACGGATTTCCCAGAAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTCTCCCCCTCTGAGTTAAAAACAATACTGCACTCGAAACGAGCCAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGTGTCGAATATGTCACGGATGAAGGAAAACAGTCTCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //