Array 1 21731-23893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWN010000024.1 Erwinia amylovora strain CFBP 1995 Ea_CFBP1995_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21731 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 21792 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 21853 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 21914 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 21975 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 22036 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 22097 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 22158 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 22219 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 22280 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 22341 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 22402 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 22463 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 22524 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 22585 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 22646 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 22707 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 22768 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 22829 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 22890 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 22951 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 23012 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 23073 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 23134 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 23195 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 23256 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 23317 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 23378 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 23439 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 23500 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 23561 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 23622 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 23683 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 23744 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 23805 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 23866 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19221-18892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWN010000020.1 Erwinia amylovora strain CFBP 1995 Ea_CFBP1995_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19220 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19160 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19100 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19040 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18980 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 18919 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTTCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30789-28684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWN010000020.1 Erwinia amylovora strain CFBP 1995 Ea_CFBP1995_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30788 28 96.6 32 -............................ CCATTTTATGACAGTCTGGCGCAAAAACTGGA 30728 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 30667 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 30606 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 30545 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 30484 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 30423 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 30361 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 30300 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 30239 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 30178 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 30117 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 30056 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 29995 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 29934 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 29873 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 29812 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 29751 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 29690 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 29628 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 29567 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 29506 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 29445 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 29384 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29323 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29261 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29200 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29139 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29078 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29017 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 28956 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 28895 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 28834 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 28773 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 28712 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.1 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : | # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //