Array 1 1-1157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOVW01000011.1 Campylobacter jejuni strain CVM N15870 N15870_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 35 97.2 30 -................................... TCCTTGTTTTTTAATTTATTTTTATTATAT 66 36 100.0 30 .................................... TAATTAAATCAATTCCAAGTGAAATTATAG 132 36 100.0 30 .................................... TAATTAAATCAATTCCAAGTGAAATTATAG 198 36 100.0 30 .................................... AATTCTAAAAAAGCAGGATATGCTAGTAAA 264 36 100.0 30 .................................... TATTACAGCTTTAAGTGGTTTAGATAAATT 330 36 100.0 30 .................................... TATCGTCCTTTTGATGAGTTAGTTGAAGTT 396 36 100.0 30 .................................... AGTTAAAGTGTATAAATGGCTTTTTGACTA 462 36 100.0 30 .................................... TAAAAAATCTAAAATAGAGTTAAAAGTATC 528 36 100.0 30 .................................... AAACTTTTTACAGTTTTGTAGAATATATAA 594 36 100.0 30 .................................... ATCGCTCCATTTTATAACGCAATCGGTTTT 660 36 100.0 30 .................................... TTCATTACAATATTTAGTTATTGCATTATT 726 36 100.0 30 .................................... GAGGTTATGGATATGGATATAGAAGACTCA 792 36 100.0 30 .................................... TTTAGGGTTTTTCGCAGCCTTACTTATTGC 858 36 100.0 30 .................................... ATGAGTGTGCTAAAAAAAATGGACTTAAAT 924 36 100.0 30 .................................... TGAAATTCATAATATAGAATATGAGGCCAA 990 36 100.0 30 .................................... ACAAACTTAAGCCATAAAGGTATTTGACTG 1056 36 100.0 30 .................................... ATCGAGAAGACTTTGTATATAGGTGTATAT 1122 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : | # Right flank : TAGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTCATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTATATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTGGTTTCGTTATTAACTTTTTCGTTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAATTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACACTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTATTTCTAAATTTACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 60643-60942 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOVW01000014.1 Campylobacter jejuni strain CVM N15870 N15870_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 60643 36 97.2 30 A................................... TATGGCAGTTTTTAAAAGAGCTTGGCGGTT 60709 36 100.0 30 .................................... CTACAAGAATGAGGATGATGATATTTTACA 60775 36 100.0 30 .................................... GCACTTGTTTTTGATTGAACGAAGCAACCA 60841 36 100.0 30 .................................... TATTTCTAAGTCAATTACAATTAAATTAAT 60907 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 99.4 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGTAACATAAAGTTTGAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTGGTGCCAAAAGAATGTGAAATTTTAGAAAATGAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTAGGGTTT # Right flank : | # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //