Array 1 1346852-1347063 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWY01000001.1 Streptomyces sp. AC1-42W contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1346852 29 100.0 32 ............................. ATGCCGGTGTGGACCAACAGGGCCCAGTCCTC 1346913 29 100.0 32 ............................. TCGTCCAGGAGAAGGGCAAAGGCCTGTACTTC 1346974 29 100.0 32 ............................. TCCGGCTGGAGGGTCAACGACCTCGCGCCGGT 1347035 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGCTCCCCGCACACGCGGGGATGGTCCC # Left flank : CGTACTCCCGGTCGAACAGGGACGCGTCGTCGGGGAGGACGCCGACACGGTGGAGGTAGTCGGCGACCCGGCCGCGCTGGTGAAGGTGACCTCGGCGATGCCGTTCCGGGTGTAGTAGTGGACGTCGGACGCGCCGACGGGTATCGGCGCGTCTCCGGCAGGGATGACCTGGGGAAGCCGCGTCTGACTGCCGTCGCACGCACGGGAGTCCCCGAAGGGGTGGAACAACCGGTCCTGGAACAACCAGCCGAAGCCCCCACCGCCGAGCCCCTTGCGGTGCGCCAAACATGAACTTCTCCTTCGAACATGATCGGACAGGCCACCGCAGCCTAGGCTGACGGAGAGACGTTGGTTCAACGGCCGCGTCACGATGGAGGACCCGAACGGTGAGCGGGTTGGCCTGGTATGCATAGGAGCAAGATGATGGGCCTGATATGCCGGAGTCCGTGAAAGTGGTCAGTTTCCACGCAACACTGAGATAAAAGCGCAGGTCACGAAGA # Right flank : CGTGTCCCGGAGGCCTTTGGCGTGAGCGGGGTCACACGTCTCGGGGCGTCGGCTGCTTGCAGACAGAGAGGAATACCTGCCATGCCGGCCCGGAGAACTCCAGAGGGTGCCGGGAGAGGTCCTTGGAGTCTCGGACGTGCACGGTGGACGCAGCTGCTCGGGCCTCCACACAAGCGTCCTCGAAGTCGCTGCTGTAGGTGCTCTTGCGCCATCCGCTGGGCGACAGTGCCATGGGGGGCCTCCCGGGTATGGGGAATGTGGCAGACCGCTCACTGCCACGTGGAAGTGTAGGACCCATGGCCTGAGCCCAAGGGAGAAATGATGCCAGGCAAGGCTCGGCAGACAGTCGCCGAGATGGACGCCACGAGCAGGCCCGCGCTCTGCTCAACGCGCTGATCTCCGCGTACAGCGCCCGAATAGGGGCAGCGCCGACCCGGGAGGCCGCCCAGGAGCTGCGGGCGGAGCGCGCCCCTTCCGGCCGAGCGGGACAGCCTGTCCGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1356798-1357234 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWY01000001.1 Streptomyces sp. AC1-42W contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 1356798 29 100.0 32 ............................. GACGTGGCCCCGGCCGGGCCCATCTTCATGGA 1356859 29 93.1 32 ..........................TT. GCCACTGTAACGGATCAGACCCGCTCAGCCCA 1356920 29 100.0 32 ............................. TCGGCAGCGTCCTCGCCGTCGAAGAGCGCATC 1356981 29 100.0 32 ............................. GCCGAGGCCGCCCGCGAGCTTGCCGAGCTCAA 1357042 29 100.0 32 ............................. GAGTTCGGGAGGTACAGCTCGGGGAAGAGCTG 1357103 29 96.6 72 .............A............... TCCACCGACGGCTACCGCTGGACGATGCTCGGCTGCTCCCCGCTGCCGGCGCGGCGCCCGCAAGCCCGCTCG 1357204 29 93.1 0 .............T........C...... | TA [1357214] ========== ====== ====== ====== ============================= ======================================================================== ================== 7 29 97.5 39 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : TCCGGGGATCGACTTCTACTGGACCCGCGACGAGACCTGGAACCCGCTCTTCGCCCTGGAAGTGAGCCAGGCCGGCACGTACGAGGTCACCTGTGAGTCCAAGGGGCCGTCACAATACGCAGTCGGGGAATCCGGTGGATTCGTTGAGTTCATGCGCGGCTCGGTTCTGGCGATCGTGCTCCCGATGTGCGGGTTCGGCATCGGCCTGACCATCGTGATCGTCGTCGCCGTCCGCCGCAGCGACCACCGCAAGCGCCTCCGCGCCGAACGCTACGGCCCCGGCCCCGGCGATGCGCGCCACACCGCAGCCTGAACGAGCGGAGGCCCACGGGGTGGGCGCCGAGTTGGCACCGAAACGCTTCCCGCGCGACGATGCAACGACGGAGCCGTGACTCGGCCTACCTGAAATACCCACTGTGAGGACTTTGACCGCTATGCCGGTTCCAGCGAAAGTGGTCAAAAACCGGGTCCCCACGATACAAACAAGCAGGTCACGCACT # Right flank : CAGCGCCCCAACAGGGCTACCCAGCAAGCCGCTCCCCGCGCTTCCAGCCCCCGGTAACAGGCCCGTCCACCCCGCCCCAACTCCCGTTGGCCGCCGTCCGTCGTACCGCCCCGCTACCGTGGTGCCGTATGAGCGATACGCACACGCATGCACCCGTCGACATCACCGCCGACCTGATTCGCGATCTTCTCCGTGACCAGCATCCCGATCTCGCCGGGCTTCCGCTGAGCCTCGGTGCGCGGGGGTGGGACAACCAGTTGTGGCGGTTGGGGGACGAGCTGGCCGTGCGGTTGCCGTGGGCGACGGCGGGGGCGGATGAGTTGCTGCTCAAGGAGCATGCGTGGGTGCCCCGTCTCGCCCCGGACCTTCCGCTGCCGGTTCCCGTGCCGCAGCGCCTGGGCGTGCCGTCCGAGCGGTTTCCGCGGAGCTGGCTGGTCACCACCTGGGTGCCGGGCGAACCCGGTGACCGGGTTCCGGTGACGCGGGGCGAGGAGGCGGCC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2771099-2771582 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWY01000001.1 Streptomyces sp. AC1-42W contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2771099 37 100.0 42 ..................................... CCGCATTGCGAGCGGCGATCTGCTTGCGCTTGGCGGTGGTGC 2771178 37 100.0 36 ..................................... CCGACCGGGGGAACTGAGCCACGTACCGCGTGCTGG 2771251 37 100.0 35 ..................................... GTGGCTCGACCCTAAGGTCGTGCCAGGGTTGTACT 2771323 37 100.0 36 ..................................... GGCCGAGGCCCCTAGGTTCTTCGCTTGCTGTACATG 2771396 37 100.0 38 ..................................... GTTCTCAGCGAGAAGCGCCCTCACCTCCGACTCCTTGT 2771471 37 100.0 38 ..................................... GCGGCCCTCTCGAAGTCGCCGAGCAGGGATTCCATCGC 2771546 37 89.2 0 .............A.................G..TT. | ========== ====== ====== ====== ===================================== ========================================== ================== 7 37 98.5 38 GTTCCGCAGGACCGAAAGGCCCGTAGGGCATAGAAAC # Left flank : GCTGGAACACGTACGCCGACGTAGCCCTCCCGGACGACCTGATCACCGAACTCCGCGAAGCCGTCCTCTTGTCCGCCCATGAGGTGAAGAGCGTCCCCGTCGAAATCGGCCATGGCCACCGCATCGGCTTCCTGGGCCACGCCACGTTCACTCTGCCCCGGGCGGCCGCCCCCGCCGTACGGACGACGTTCACAGCCCTCTCCCACTTCGCCGAACTCGCAGGCAGCGGCGCCCAGACCACCCATGGCCTGGGCTGGACGAACGTCACGACGACGGACCACCGCGAGCCGCCGGCGATCGGACGACCGCCCCGGCGGTAACGTGACCGCACCTCACACCAACAGCGCCCCGAGCCCGATTCCCGCGCGAGCCGAACGTGCGGGTCGCAGCCCTGCGGCGAGATCTTGTGACCCATATCACAGATCGGGCCACCCGCTGGCGGCAAGTCCTGCGCAACGGGCAGAATCCCAGCAGGTCACAGGCCCCGGCTGAGGCAAAGG # Right flank : CCTCGTTCACTCGAAGGGAATTTCATGGCTGAGCTTCTTCACCGCGCCGCTTCGGAGTCCGCGTTGCTTGCAGCCTGGGGCGAGGTCCAGGAGAACGATCTGGCGGACGGAAAGGTGAGCAAACAGGTCGCCGACTACGCGAAGGGCGTGCTCGGTCGACTGGCGGCGCTCAGCCGCGCGCTTCGGGCCGGTACGTGGAATCCGTCGCCCGTCTACGCCATGGAGATCGACAAGAGATCTGGCGGAAAGCGCCTCCTGGCTGTTCCTGCCGTCGAGGACCGCGTCGTCGAGCGCGCACTCATGGAGGTCGTCGACGACCACATCGACGCCGTGCTGCTCCCCTGGAGCTACGCCTACCGCAAGGGCCTCTCGGTGTCCGACGCCTTGGACGACCTCGCAGCCGCGCGCGACGACGGTGCGCGCTGGGTCGTCCGGGCCGACATCAAGGATTGCTTCGAGCGGGTGCCTCGCTGGCCGGCGCTGACGCGGCTGCGTGAGCT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGCAGGACCGAAAGGCCCGTAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1177522-1175541 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWY01000002.1 Streptomyces sp. AC1-42W contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 1177521 29 100.0 32 ............................. TTGACCGAGGGTCGCATCCTCGCCAAGGAACT 1177460 29 100.0 32 ............................. GTCCTGATGTCGTCGTCCGCACCACGGGCCGC 1177399 29 100.0 32 ............................. TTGACGGCCGAGGACGAGCAGACGTTCGACGA 1177338 29 100.0 32 ............................. GCGCGGTCGTGGGAATACAAGAAGGACCCCAA 1177277 29 100.0 32 ............................. GCGCGGTCGTGGGAATACAAGAAGGACCCCAA 1177216 29 100.0 32 ............................. GTCCTGATGTCGTCGTCCGCACCACGGGCCGC 1177155 29 100.0 32 ............................. GAGCTGCCGGTCGACGACGTCCGGCGGCATGC 1177094 29 100.0 32 ............................. AGCCACCGCGCCTTGGCGTAGTACGCGCTCTT 1177033 29 100.0 33 ............................. TCGGCCCAGGACGCGAACTGGTTGTGCAGGCCG 1176971 29 100.0 32 ............................. GAGACGATCAAGATGCTCATGGTCCGCACGGG 1176910 29 100.0 32 ............................. ACGCTCGACTCGATCAGCCCGGCGTTCGTGCC 1176849 29 100.0 32 ............................. GTGGCCGGTGCGCAGGCGAGAAGGCCGGACTC 1176788 29 100.0 32 ............................. CGGGCGGCGACCACGTCGGCGGCGAGGTCGTC 1176727 29 100.0 32 ............................. GGCTGGACCCGCGCAGCGTCGACCACGCCAAG 1176666 29 100.0 32 ............................. TACACCCGCGACTGGTCCTGGGCGCAGATCAT 1176605 29 96.6 32 ............................T CGCCAACTCGACACGTTCCAAAACTGCGTCCA 1176544 29 100.0 32 ............................. GGCAAAAGGCTCCGGGCCGGCGTGGCAGCAGA 1176483 29 96.6 32 ............................G TCACCGCCCGAGTCGGCCCGCGCCGGAACTTC 1176422 29 100.0 32 ............................. TCCGGCCCCCGCTGCCAGGAGTGCGACCGCCC 1176361 29 100.0 32 ............................. GCCTTGTCCGCGAGAGCTTCCTTGTACTCCGT 1176300 29 100.0 32 ............................. AGAGCGTGTCCAGTTTTCCGGACAGGGAATTC 1176239 29 100.0 32 ............................. GGGGTGTGGCAGTCGGCGCACGGGCGGAATCG 1176178 29 96.6 32 ............................G CCGCCGATGCCCATGACGATCCCTGGGGCCAA 1176117 29 100.0 32 ............................. GGAATCCCATGGCCTACTCCCGCGTGCCGAGA 1176056 29 96.6 32 ............................G CAGAGGAGGGACGCCGCGTGACCCCGAGATGC 1175995 29 100.0 32 ............................. TCGTCGGGGCGCAAGGCGATCTGGTCGGCGGC 1175934 29 100.0 32 ............................. CCGTCGGAGGCGTCCGAGGTCTTCACGATTTC 1175873 29 100.0 32 ............................. CGGCCGGCGTCCACGGAACGGTCGCAGTGCTG 1175812 29 100.0 32 ............................. TGCCTGGCGAAGGTCCGCGTGCTCGCGGAGTA 1175751 29 100.0 32 ............................. GACCATCCGAGCCCGAGCTCGACCCTCCCCAC 1175690 29 100.0 92 ............................. GACCGGCCGGACGACACCCTGCGCACCGCCGGCTGCTCCCCCCGCTCGGGGGATGTCCTCATGAACGTCTTGGGCAGCGGGCCGAACACGTT 1175569 29 82.8 0 ........G...T...T....C..C.... | ========== ====== ====== ====== ============================= ============================================================================================ ================== 32 29 99.0 34 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GGAAGGCGGGCGTTGCCTTCCCGATGTCGTGCGCCCCTGCCAACCAAACGGCAAGCCGCCGCCCGTCGTCCTCCCCTCCGGGGAGCGAGGCGCTGATGACCCGCCGCACGCCGGCCGGCAACCACGAGTCCCACAACAGGCCGGCGACGGCCGCGCTGTCCTCCATGTGCCGCCACCCCGCCGAGTCCCGGTCATGCTTGGCCCACACGGTGCGGGTGGGGGCGGAGAGCGTGACGTGGAGACCGGGGCGGGAGGTGGGACGGCTTGCGGTGGTCATGGGCCATTGATACAGAAGGGGAAGAGACGCTCACAGGATGAAAGTTGAGCCAATTTGACGGATGCTGGAGCAAGTGGACCTCACGAGGGGTAGCCAACCGCCAGAGCACCCCGCCACCTTGCGCACGACTCCAACCAGCAACCAGGCAAGGTCCGTTATGTCGGGTTCAATGAAAGTGGTCAAAAACCGCCTCCCCACCGGATAAAGTCGCAGGTCACGGAGT # Right flank : CACACGAGCGCGTCAAGGTGCGTGTCCCAGCTCTGCTCCCCACACTCGCAGGGACAACCCCTTGGGGCTGCCACGCTCATCACCGGGGCCTCCGCGAATCATGTGCTCTGTGTAATGAATCACTCACGCAGCGGCGTTTGTGCGCGTACGCTCGACACGCCTGTGGGCACTCCAACACAGAAGCCGACGCGGGGAGTTGAACAGATGAGCGAACAGGCGGAGCAGGATCGGGAGCCCTCGAACGGCGCGGCCTACTTCGGTGAGGAAGTCCGGGCGGTGCGGGAGGCGCTGGCGCTGTCCCAGACGGAGTTCGCGGACCAGCTCCACTACCAGCAGGCCCAGGTCAGCAAGGTCGAGAACGGCGTCGCGCTCGCGTCGGAGGCATTCGCGGTGGCCATGGACCGCGTGGCGGGAACGCCGGGCACGTATCTGCGCCTCCGCACCAGGCTGAGCAAGCGGGGGCACCCCGAGTGGTTCATCCCGTACATCGCCCTTGAGGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1182161-1180251 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWY01000002.1 Streptomyces sp. AC1-42W contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1182160 29 100.0 32 ............................. AGGCGCTGCTCGAACCCGCCGGTCTTCGTGAG 1182099 29 100.0 32 ............................. ATCGGGACACCCTCGGGCAGGTCGATCATGCG 1182038 29 100.0 32 ............................. ACGCTGATCCTTGACGCCGTCCACTGGTCCCT 1181977 29 100.0 32 ............................. TGGTCGTACGGGGTCGAGTCGAACCCGTACAT 1181916 29 100.0 32 ............................. GCGGGATCGCTTTGGCGCCAATTGTTGTACTG 1181855 29 100.0 32 ............................. CAGAACAGGTGGCTCGGCGACTGCGCGAACTG 1181794 29 100.0 32 ............................. GAACGCCTCGGCCAGGACGGGCATGCCGTCGA 1181733 29 100.0 32 ............................. TCCCCGACGACGGCCTCTCTCCGGGGCGCGAG 1181672 29 100.0 32 ............................. GCCCACCCCTCGGCCGCCTCGTCGAGGGGGTG 1181611 29 100.0 32 ............................. CCGACGCACACCCTCCCCGCGTACGCGATCCG 1181550 29 100.0 32 ............................. GCCAGGCGTACAACGCCGAGCAGCGCTCGAAG 1181489 29 100.0 32 ............................. GCCGGCCGGAGCCGAGACCCCGCCCGAGCCCG 1181428 29 100.0 32 ............................. GCACCAAGTGGTGCGTTGTCTAGGCAGGGTGT 1181367 29 100.0 32 ............................. GTCGCGGGCACGGATCACCGGGCCATCGCCGG 1181306 29 100.0 32 ............................. ACCCTGCGTCTGAAGGACGCAGTGGACTCCGT 1181245 29 100.0 33 ............................. CTCACTCGGCTCGACGTCAAGCAGGGCCAGGGC 1181183 29 100.0 32 ............................. GCAGGCCGTCAGTGGCGGCAGGCGAAGAAGGA 1181122 29 100.0 32 ............................. GGCAGCAGCGGCATCGCCCCGGCCTGTATCCC 1181061 29 100.0 32 ............................. GACGGAGGAGAACACCATGTGGCAGACCCTGA 1181000 29 96.6 32 ............................T AGTCACCGCGCTTCTCCGGATATCCCATCGTT 1180939 29 100.0 20 ............................. ACCCCGACCCGCACGTTCGT Deletion [1180891] 1180890 29 100.0 32 ............................. TCCTCGCGGTCCGCGGCGCTCGCCGCGGTGAG 1180829 29 100.0 32 ............................. CGGCTGCACCCGCACTCGCGCCGCAGCCGGTT A [1180808] 1180767 29 100.0 32 ............................. GGAGGCAGCAACAGCCAGCTGTGTTCCCGCCG 1180706 29 100.0 32 ............................. TGCATGACCGGGGTGGACTCGCGGATCGTCTT 1180645 29 100.0 32 ............................. ACCGGCATCGTGTCGCCGGACAATGAGTCCGA 1180584 29 100.0 32 ............................. GCCCTGGTGCGCGGCCGCCCGCTCACCGCGCT 1180523 29 100.0 32 ............................. TTCGCGCGGCGCTTCACGTTCAGGTCGGAGGC 1180462 29 93.1 32 ....................A...T.... CGGCGGCGTTCCCGGGCGAAGAACTCGTAGAC 1180401 29 93.1 32 ..A..........A............... GCGCTTGATGCGGAGGCCGGCTCGGAAGCGGC 1180340 29 96.6 32 ........................T.... TGGTGGTGCACAGCGACGGCCGGCTCGGCTTC 1180279 29 75.9 0 ......G.....GC...A....C.T..T. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TCCCGATGTCGTGCGCCCCGGCCAACCAAACGGCAAGCCGCCGCCCGTCGTCCTCCCCTCCGGGGAGGGAAGCGCTGACGACCGCCCGAACACTGCCCGGCAACCACGAGTCCCACAACAGGCCGGCGACGGCCGCGCTGTCCTCCATGTGCCGCCACAGGGGCAGCCACCCCTCGGAGTCCCGGTCGTGCTTGGCCCACACGGTGCGAGTGGGGGCGGAGAGCCTGACGTGGAGACCGGGGCGGGAGGTGGGACGACTTGCGGTGGCCATGGGCCATTAATACAGGAGGAGAAGAGGAGGAGATGCTCATAGGATGAAAGTTGAGTCATTTTGAGGGATGTTGGAGCAAGTGGACCTCACGAGGGGTAACCAACCGCTACAGTCCCCAGCCACCTTGCGCACGACTCCAACCAGCAACCGGGCAGGGTCCGTTATGTCGGTTTCAATGAAAGTGGTCAAAAACCGCCTCCCCACCGGATAAAGTCGCAGGTCACAAAGC # Right flank : GGCCCGCAGCCGCCCCCGTGAACTTAATGCCCCTCGCCGGCTCCGGTCGGCGGCGGGGCGCAGTTCTGTGTCTGGATCATGTGACGGCGCACACAGATAGGGCCCTGCCTCATACCCTGACAGGTGTCGAAGCTGTTCAGAGAGGGGCAAGGCCATGCGATTTGATGCTACCCCGGACCCGTACGCCAACCCGATCCCATTCGGACATCGCCTGCAGATCCTTCGCACCCGCCGGGGCCTGACCCGCGAGGCGCTCGGCGGGCTGATGGGACGGTCCGGGTCGTGGGTGAAGGGGCTGGAGTCCGGTCGGCTCAAGACACCAAAGCTCGATGTGCTCCTGCACCTGGCTGAGGTTCTCCGTGTGCGGGATCTCTCGGACCTGACCGGGGACCAGGTCGGTGTGCGAGCCGCGCTGTTCACCGGCCCGGGGCACCCGCGGCTGGCTGCCGTTGCGTCTGCGGTGGACGCCTTCGCCCTCACCTCGGACTCGCCCGCACCAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2504480-2497822 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWY01000002.1 Streptomyces sp. AC1-42W contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2504479 28 100.0 33 ............................ GCGGCGCAGCAGATCCGCGAGCAGCAGGATCGG 2504418 28 100.0 33 ............................ CCAGGAGGTCGCGAGCTGGACGACGAACCCCTC 2504357 28 100.0 33 ............................ CTCCACGACACGGTCCTCCGCCGTCGAGGCACG 2504296 28 100.0 33 ............................ CACGTAGCCCCGAGCAGGATCGCGGGTGACGGT 2504235 28 100.0 33 ............................ CGCCAGGCCGCGCGGCGTCAGGTGCAGCGTGTA 2504174 28 100.0 33 ............................ CGCCTGCCGCCCCTCGATCTACACCAGCAACCT 2504113 28 100.0 33 ............................ CGTGAGGACCGCGAGCGTGCGGCGCGTGAGGCC 2504052 28 100.0 33 ............................ CCGCTCCAGGCGCAGCGGGCCCTCGCCCTCGGC 2503991 28 100.0 33 ............................ CTTTTCCGGGACCAGCCCGGAGGTCTTGGCCGC 2503930 28 100.0 33 ............................ CGCCACCCCGGCAGAGATCAGGGAGGCGACCCG 2503869 28 100.0 33 ............................ CCTGGAGAGCCACTTCGGCCTCGGGTACAACGG 2503808 28 100.0 33 ............................ CGAGCTCACGAAGACCGGCGGGTTCGAGCAGCG 2503747 28 100.0 33 ............................ CTGACCGAGGGCGCCGTTGTACCCGAGGCCGAA 2503686 28 100.0 33 ............................ CTTCGCGCAGGACGCGGGCCGGGTCGTGGCGGG 2503625 28 100.0 33 ............................ GAGGACTACCAGTACGACGACATGGACGAGGAG 2503564 28 100.0 33 ............................ TGCCGCTGTGGGGGGACGGGGGTAGTCGCTGTG 2503503 28 100.0 33 ............................ GGCGGATGCGTCGTCTTCCTCCTCTTCGTGCTC 2503442 28 100.0 33 ............................ CGCGGTCCAGGAGGACGCCTCGCTCCTGGGCCC 2503381 28 100.0 33 ............................ CGCCCTGGCGGCCAGGGCCAGGTCCGATGTCGC 2503320 28 100.0 33 ............................ TTCCTGGTTGCCCGCCTGCAGCGCGAGCACGGC 2503259 28 100.0 33 ............................ CTGGAGGCGGGCTACACGGTGTCGCAGGCCGCG 2503198 28 100.0 33 ............................ CGACGGCCCTCGCCGTCGTCAAGGGTCGGTCAG 2503137 28 100.0 33 ............................ GATGGGCGTCACCGCCCACGGCCCCATCTGCGG 2503076 28 100.0 33 ............................ CGATGACCGCCAGCGCATTCACGATGCGGCCCT 2503015 28 100.0 33 ............................ GTCGGCGTGGTCGGCTTCTGCCGCTGCGACGAC 2502954 28 100.0 33 ............................ CCGCGAGCACGACCAGGACGACGGCGAGCCCGG 2502893 28 100.0 33 ............................ GTCCTACTTCGGCACCAACTTGCTCGGAGTGTC 2502832 28 100.0 33 ............................ ACCGGGCCTGCCGGTGGGGCTGTTTCTCCGGAC 2502771 28 100.0 33 ............................ CCCAAGGCGCGTACAGTCCGCTTGATCGCGGAA 2502710 28 100.0 33 ............................ CTCGGCCTTGGCCACGGATCGGCTCTTAGTGGC 2502649 28 100.0 33 ............................ CTCGGCCTTGGCCACGGATCGGCTCTTAGTGGC 2502588 28 100.0 33 ............................ TCCATCACGTGGCCTTCACCCTGCCCCCACGCG 2502527 28 100.0 33 ............................ CCCCGAGCCCGAGAACACCGCCCCCCGCCGCCC 2502466 28 100.0 33 ............................ TGCCTTCTGCCTGGCCGCGTTCGCCTGCCGCTC 2502405 28 100.0 33 ............................ CGCGGCCGGGTGCCGCCCAGCCTCGGGCCCGGT 2502344 28 100.0 33 ............................ TCGGCGATTTTGGCCCTGGTAGACAGCCACGCG 2502283 28 100.0 33 ............................ CGTGGTCGGCGGTTTCGTGAGGAGCAGGCGCCA 2502222 28 100.0 34 ............................ GCCCAAGCGCGGGTCCGGCGAGAAGTGGGACCCG 2502160 28 100.0 33 ............................ GCCGGACCAGGACGAGGTCTTCTCGACTCCGAT 2502099 28 100.0 33 ............................ GATACCCCTGCCTCATAGGCGACTACATGCCGG 2502038 28 100.0 33 ............................ TAGAGGTGGCCGGCGACCTAGTCCACTAGGCCG 2501977 28 100.0 33 ............................ GGACGCACGGCGGTGATTCCGTGCGCCCGATGT 2501916 28 100.0 33 ............................ CACCCTGATTCCGTTCCGCAACGGAATCATTCA 2501855 28 100.0 33 ............................ GTCTTCGGCGACAGTGGGGAGTCCTCGTGTCCG 2501794 28 100.0 33 ............................ CTGCTTCACGCGCGTGTCTCCGGGACACGAGTG 2501733 28 100.0 33 ............................ GCCGCTGGAGACCGCGCGGGATGCGGAGGACCT 2501672 28 100.0 33 ............................ TCTGCGATGGACCACGTGCTCGCGGGCCCGAGC 2501611 28 100.0 33 ............................ GGCAGCCCGGTACGGCATCAGCTCGGGGCAGTG 2501550 28 100.0 33 ............................ GACCGTTCGTTGGACTCCATGTCCCAGGCCCAC 2501489 28 100.0 33 ............................ CCCCGACCGGCGGCACGTACACGCTGTCCTACT 2501428 28 100.0 33 ............................ GGCCCAGGCCGGGTTCGTCTTCACGCCCATCAA 2501367 28 100.0 33 ............................ GGCAGCCCGGTACGGCATCAGCTCGGGGCAGTG 2501306 28 100.0 33 ............................ TCGTGCTGACGGCTGACCTCGGCGTGGCCGTGG 2501245 28 100.0 33 ............................ AGGCGATCACGAAGGTAACCACCCTGCCCGGCG 2501184 28 100.0 33 ............................ CACACGGAGACGGGGTGATCGCCGATGCCCCGC 2501123 28 100.0 33 ............................ CCTCGTCTACGTCCGCGCTGAGCTGCGCGCCAT 2501062 28 100.0 33 ............................ CACGACGTGGCCCAGCTGATCGTCGTGTTCCGG 2501001 28 100.0 33 ............................ TCGACCTGGGCACGCTGGAGGCCGGCAACAAGT 2500940 28 100.0 33 ............................ TGCCCAGTGGGACACCTCGCCTGCCATCTTCCG 2500879 28 100.0 33 ............................ TCACGACCGGCGGTGGCGGCCGCGCTCGCGCAA 2500818 28 100.0 33 ............................ CGCCCCGATCCGGATCAGCCAGGCGGTCATCCC 2500757 28 100.0 33 ............................ CTCGCCGCCCTCGCCGCCCTGTGGGCCACCGTC 2500696 28 100.0 33 ............................ CGCGGTCCGCTCATCGCCGAGGTGGGCCGCGCG 2500635 28 100.0 33 ............................ CTCGGCGGTGCCGCCGCAGATGGGGCCGTGGGC 2500574 28 100.0 33 ............................ CGTGAGGAACAGCTGCTCGTACGCAGTCAGCTG 2500513 28 100.0 33 ............................ CGGCACCAGCGACGCCGCGTAAATCGCGACAGC 2500452 28 100.0 33 ............................ GGAGCTGGAGCCGAAGGCACTGGCCCACGACAC 2500391 28 100.0 33 ............................ TCCGTACGGGTGGTGGCGGGTGCCACCGCTCCT 2500330 28 100.0 33 ............................ CCGCCGCCGCCCGGACGACCGGGCGGCGGCCCC 2500269 28 100.0 33 ............................ GGCGGCCATGCCTGCGTATCCGGCAAGGAGGGC 2500208 28 100.0 33 ............................ GGGCGTCCCGCTCACGACGGGCACCGTGACCAG 2500147 28 100.0 33 ............................ CTCTTCCAGATCGCTGGGGGTACAGAGGTGGGC 2500086 28 100.0 33 ............................ CACCCTCCTGGACCTGCTGACCGAGGCCGCCGA 2500025 28 100.0 33 ............................ CGTGGTGGTGGCTGCCCCGTTGGGGGTGAGCCG 2499964 28 100.0 33 ............................ GGCCAGGCACGGCCCGGCCCTGGATCTCGGCGT 2499903 28 100.0 33 ............................ GTCGCGGATGCCCCTCACTCTCGCCCCCGTCGC 2499842 28 100.0 33 ............................ CGCGCTGCTGCAGCTGGTCGCGCCGTACGCCCA 2499781 28 100.0 33 ............................ CCCGCGCTGGGTCGAGGCGAGGCGCAGCGTCCA 2499720 28 100.0 33 ............................ CGCGGTCTGGCTCGCCAGGCTGGAAGCCGCCGG 2499659 28 100.0 33 ............................ CGCCGCGCCGATCGTGGCCAGTGCGGGCGACAG 2499598 28 100.0 33 ............................ GGTCGCGCTGCTGTCCGACCGGGCGTTCCGGCT 2499537 28 100.0 33 ............................ GCACCGGCGCCCGCCGAGGACACGCGAGCCCGA 2499476 28 100.0 33 ............................ CGCATCATCCACGGCGGTGCCCCCGGCCAGGGC 2499415 28 100.0 33 ............................ CGGGGCCAGGTCCCGGCGCATCGGTGACGCCTG 2499354 28 100.0 33 ............................ GTCCGACAGCTCGGGCCAGAGCTGGTCGCCGTG 2499293 28 100.0 33 ............................ CGTGATTTTCCCCGGCATCGTCGCCCGCGCGAC 2499232 28 100.0 33 ............................ GGTGTCGGCCAGCGTCGACAGCGAGTACGGCGC 2499171 28 100.0 33 ............................ CCCCCGCGCCGCTGTCACGGCCGGGGGTGTGGA 2499110 28 100.0 33 ............................ CAAGCGGTGCACCGAGGTCACCGGGGTCCGCGG 2499049 28 100.0 33 ............................ GGCCGCCGCCGCGAAGGCCCGCGCCCGGTCCCT 2498988 28 100.0 33 ............................ CCGGACGTGGGTGTCCGCACTGGGCTGCTCGGT 2498927 28 100.0 33 ............................ CGCGCCCTCACCGCCGCATCCCCCGCCGCGGAA 2498866 28 100.0 33 ............................ CTGCGCCCCGACATTGTCGAGCTGCTGCGCGCG 2498805 28 100.0 33 ............................ CGGCCGGGCGATGACGGCGGTGTCCGGTGACTG 2498744 28 100.0 33 ............................ CGTCGACCACCTCATCCGCCGCAACATCACAGA 2498683 28 100.0 33 ............................ CGCGCCGGCCGCGTCTGGCTGGACACCCCGGCC 2498622 28 100.0 33 ............................ CCCACCGCCCACCCCGACCTCGACCCCGACGAC 2498561 28 100.0 33 ............................ GTCGGGGGCGCTTGGCGGTTCACCGCAGCCCAG 2498500 28 100.0 33 ............................ CCTCTTGGCCGGAACCTCCTACGTGTCGATGTC 2498439 28 100.0 33 ............................ GCCGGTCATCACGCGCGGCGGCGTCACCTACTG 2498378 28 100.0 33 ............................ CTCGGCGCGCCGCCGCTCGTACTCCTCCAGCGA 2498317 28 100.0 33 ............................ CGAGGCCGACGCCATCGACGGCGTGCTCGACCT 2498256 28 100.0 33 ............................ CCCGCTCTACATCGTCCGCCACTTCCCCTCCGC 2498195 28 100.0 33 ............................ CCTGTCCCCGTCGGCCAGGTGATCGCCGGGCTC 2498134 28 100.0 33 ............................ CGCTGACCGCCTGTTCGTCTTCACCACCAGCTC 2498073 28 100.0 33 ............................ TATGCCGCGTCCGAGCCGGTTAAGCCCGGTAAG 2498012 28 100.0 33 ............................ CGTCATCCTGCACCCCAAGTCGGACTCGTACTT 2497951 28 100.0 33 ............................ CATGCTGCTCGGCACCGTGGCCGGCGGAACGCT 2497890 28 100.0 14 ............................ CCCCTCGTGGAGAT Deletion [2497849] 2497848 27 92.9 0 .....................-.G.... | ========== ====== ====== ====== ============================ ================================== ================== 110 28 99.9 33 GTCGTCCCCGCACCTGCGGGGGTAGTTC # Left flank : TGGCCGGCTGCCGCCCCCACGTCAGCCCGGCCGCCTGCACGGGGGCGGCCTCGATCGGGTCCATGGCCTGAAACGCCGGGCACGCCTTGCCGCAGTCGTGGATGCCGCACACCCACATGAACCACAGGCGGCCCCGGCCCCCGCTGATCTCATCAAGCCTGCGCCGAAAGGCCGGCGAGAGGTACCGGTCCCACATGAGCCCGGCCACTGCGGCCGTGTCCAGCAGATGCCCGATCAGCAGATGCGTACGCCCACCGTTCCTGGCCGCGGACTTCCCCCAAAGCCGCGAAACCCGCTCCACGACGTCGGGCGCCAGCCCCATGCCCCTCATGAGCTGAACCACAGAACACCTAAGATCTGCCACAGCAACCACTCCTTCCCTCACGCCCTGGCACACTAGGCGGTGCCACTGACAACGCCCCTGAGCGAGCCGCAGCAGACCCGAAATGCAAGTAAAGGAAAACCACCACACGCGCTAGCATCACCGCAGGTCACGAAGT # Right flank : CGCAGGCCGCCTCGTGGCCCCAGATCGTCTCGCTCGTCCTCCTCGTCAGCTCGGGGTCTCGGCGCCCCCGGCCATGCCCACCCCCGCAGCCGCGCATCGGCCGTCGGCCGTCTCGCGCGGGGGAAATCCGCCATTGGTGGGGGGTGGTGGGGCTTCGGCTGGGTCGAGGTTGGCGACTCTCTGCTGTCGGGTCGCATCATGGCGTTATCGTGCGGGAACGAGCCCACTGGCTGTCATGTGAAGGTAATCGCACAAGACCTTCACCGTCCGGTCACTTTCAGCCACATCGTGAACACCGTGCGGCTGGGGGTGCAGACGGTGTGTGCGGGCCGCGCTTAGTCTCCCGGGCCATGGAACTCACTCGTACGAGACGCCTCGGTCTCGCCGCAATCGTCGCCGTCGCCCTCTCGCTCTTCGGCATGGCGCCCTCCGCAAGCGCCGCCGGCCCGGCCGCCGAACTGTCGTTCACGACCAGCGCGGCCACCACCACGCCCGGTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCTGCGGGGGTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //