Array 1 10127-12708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOOU010000061.1 Phocaeicola vulgatus strain DFI.1.193 FEJJDMHP_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 10127 47 97.9 30 ...A........................................... AAGTTTTTAAAAGTCCTTCAGTACTTTTAT 10204 47 100.0 30 ............................................... AGTCCGTTTGAGAATGAATGATACTCCCGT 10281 47 100.0 30 ............................................... TTCTTTCTTTGTCTGAAAGTTTGACGCAAG 10358 47 100.0 29 ............................................... CCACTCTTTTAGACCTACATGTTGCGGTT 10434 47 100.0 29 ............................................... CCACTCTTTTAGACCTACATGTTGCGGTT 10510 47 100.0 29 ............................................... CTCGAGGTCTATCTTCATTGTGGGATTCG 10586 47 100.0 30 ............................................... TAGAATACAGAGATTTAACCAAGTATTTAT 10663 47 100.0 30 ............................................... ATAGCAATACTATTGAATTTGACGATGAGG 10740 47 100.0 30 ............................................... ATGACAACAGAAACACATAATTGTCTATTA 10817 47 100.0 30 ............................................... TAAGAGTTGGAAGTTCGGTCGTTCAGATTT 10894 47 100.0 30 ............................................... AAACAGGGATATAATAATGGTATTCATCAC 10971 47 100.0 30 ............................................... AAACAGGGATATAATAATGGTATTCATCAC 11048 47 100.0 30 ............................................... CTGAGTGATTTTCTCTTCCGGTCGCTTGCT 11125 47 100.0 29 ............................................... TACTCGTAGGAGTTGAACGGGGAATCATT 11201 47 100.0 30 ............................................... CTTTTTCACAGGTTCATCTTCCACCAGCTT 11278 47 100.0 29 ............................................... AGTATGGAGTGGTCCAGATGAACCGATTT 11354 47 100.0 30 ............................................... GTGAAGCGGTTACAGTCAGTGCGCTCCTGA 11431 47 100.0 30 ............................................... ATGCGGAGAAGAAGGGATATAGCAGTCGTC 11508 47 100.0 30 ............................................... ACTTCGTCCGAAAACGTGGTTTGGATGAGT 11585 47 100.0 30 ............................................... ACCGTTACAATGGAACATACTGTTTGAATA 11662 47 100.0 30 ............................................... GACATCGTGAAGTCAATCACAGGCGAGCCG 11739 47 100.0 30 ............................................... CCTGGCTTCTGGTCGTCAACGCTGTACTTC 11816 47 100.0 30 ............................................... CCAGCGCTGCAAGTATTCAGTTGCACGGAG 11893 47 100.0 29 ............................................... GGATCCAGCCAGAGCGGCAGAACCTTGAA 11969 47 100.0 30 ............................................... ATCCGTCTCAATCATATTCCCTTTGCCAGT 12046 47 100.0 30 ............................................... TGGTTTATGCTAATGACGAGTTCTGTATGA 12123 47 100.0 30 ............................................... AACAAGGACAATAAAGAACTATACAAACTT 12200 47 100.0 30 ............................................... TGACGAATCAAATGTTATGTTTATCTGTAA 12277 47 100.0 30 ............................................... AAATCGAGCAGACGGCCACCACTCCGCAGA 12354 47 100.0 30 ............................................... ACATATACGCACTGAAAACGCAGCTTATCT 12431 47 100.0 30 ............................................... TATCGGCCATTCTCTCCATACTGGATTTGC 12508 47 100.0 30 ............................................... GTACCCGTGAAAGATGAGCGTTTCGGTATT 12585 47 100.0 30 ............................................... TATCCATTAGTGCTGAGGATGCTATACTTA 12662 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 34 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTTTCAGCTAATAT # Right flank : CAGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //