Array 1 243946-242854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYGV010000001.1 Lactiplantibacillus pentosus strain 7.8.11 assembly_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 243945 36 100.0 30 .................................... GCTGACGACGGCCGTTATCAAGCTAATGTG 243879 36 100.0 30 .................................... TTTTATCATGTCAACCGAGTATATCAATGA 243813 36 100.0 30 .................................... TAATCCCGACCAAATTAACAAGGGAAATAA 243747 36 100.0 30 .................................... CGCTAGTCAATCCGCCTTCACGTACCAAGA 243681 36 100.0 30 .................................... GCGATACTGGTCAAACCGTGCTACAAGTGT 243615 36 100.0 30 .................................... GCCAATCAGCTCGATTTCGACTGCAACCAA 243549 36 100.0 30 .................................... AGCATAAATCCCCACACCGGCTGCAATAGC 243483 36 100.0 30 .................................... CATGATGGTGTAATAAAGAAAGATCCTACT 243417 36 100.0 30 .................................... CAAGGATTGGGCTGATCTCGCGCATTGGTT 243351 36 100.0 30 .................................... ATTAAAAAACGTTCCATCGTTTGATGCTAT 243285 36 100.0 30 .................................... CCGCGCTAAACGTTGTCTTAGTGACTGTTT 243219 36 100.0 30 .................................... AAACGTAACGTCAGAGCTTACGGCAATCAC 243153 36 100.0 30 .................................... TTTTAACGCCATCTATGGGTACAAAGGTCC 243087 36 100.0 30 .................................... TATCATTTTGCACGATGTCGGTGCTGAAAG 243021 36 100.0 30 .................................... GGACTGTTATGAAATACAGTGATAAGCAAA 242955 36 100.0 30 .................................... GAGGTGATGGAGGGGTCAAGGGGGTCTGGG 242889 36 97.2 0 ..........................A......... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCTGATGAACAACAAGTGGCGGTCTTGGATCAAAGCCGAGCCATGATTGCCAAAGTAATGGAAGCAAGTTTCCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTGGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCATGGATTTAACGCACAACCCTAGTGCAGTTTTAGAGGCACTTGTTCAAACTCATGTTGAGTTAGGACTCAAGCAATGCCCTGTGATGACCAATGTTAGCCACTATTTGAACTCGCAACAATGGGCCGCTTTTGAACAGCAAGTGGCGGATTTAGGCACCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGGATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTAGATTATGTGAGAATGCCG # Right flank : AGAATCGTTTCGACCTGTCATCCGGGTCGCCGACAGTGGTAATTTTAAGTAGTTGTAGAATAACCCCCGTGTTACTGTACATCTTGAATAGTAGTCACTACCCCTTAACCTCCAAGCCCACCAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTTGGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 2810-2294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYGV010000086.1 Lactiplantibacillus pentosus strain 7.8.11 assembly_contig_86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2809 28 100.0 33 ............................ CTGTAATCCCGACAGGTTTACCGCCAGAATACA 2748 28 100.0 33 ............................ TACCACCGACATTGGTTGACTCCTTAATAATGT 2687 28 100.0 33 ............................ CACGTAGTCATAGAGTATCTCGCCCGACGAATA 2626 28 100.0 33 ............................ TTTTAATCTATTAGCTGCATATAGAAACTAGCA 2565 28 100.0 33 ............................ TCAGATTGCGGCCGACGCTGGTCTGATGGTGCA 2504 28 96.4 33 ..........T................. TATATGGGTCGACACTTGTCCTAATTCGCATGA 2443 28 96.4 33 ..........T................. CAACGGTATCACATACGTTAAAGATACGCCATT 2382 28 96.4 33 ..........T................. CAATTGGGATAAAAACGCTGATACGATTTTAAA 2321 28 92.9 0 .................A...A...... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : CGTCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGGATTTTTGGCGAAATTGCCACTGTTTGATGGAAACAACTCAGAATAATATAACTAGTAGTAGTGAACCACGCCGCAGAAAGGGATTTAACGGATGATTTTATAGCCATTCTTCGCTTTATCAGTATTATATGACCATTTAGACCGGTTAATTGTAAATTCGTTTATACGGCAATTTTGAGCCGAATTCAAGCGATTCGCGAAATCTTGAGGAGCAATCATCTTTCAAGGGCGACAGCAAATTCAACTAAAATAATAATCACTTCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCGACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : TAAACAAAGCCTAAAGTAAGAAAAAGTAACACGCAAATCACTCCAAATTTCTTACGCATTGAAATATTTAGTAAGCGGCTATCATCCATAGAAACATAAGACCATCAACAAAAGTTTTAACGCATCAAAAAATCACATCGCAATGGAAAATGCAGATGTGGTCTTTCTGATTGTTCGATAGTTTTTTGCTGTTGAATCCGCTTATCATTAATACGATGCTCTGTTGAGGCGTAAAAGTAATACATCTTCAGTCCAAATATCCAACAATTTCAACTATGCTATCAATATCAACAAACAATGGATACGTCTCAGGCATCATCATTGCTTGCTCATCATCATAGTTATAGTGTAAATATCTGAAATTATAATGCGTATAAAATTCCAAGGCGTCTGGCAGTGAGCTAACGACTATTCCTATAAGACCGATGTTAAAAACGTGCCTCATCTTAATGACAGTTCTGAAAATATCAAGAATCATACTCGCTCCAATATACTTGGCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28010-28377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYGV010000003.1 Lactiplantibacillus pentosus strain 7.8.11 assembly_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28010 36 97.2 30 .......................G............ AATGTTTTAGCATCCATTCATTCCCCACCT 28076 36 97.2 30 .......................G............ CATTGCCTGGTAAAGAGGGCCGTGGTTTTA 28142 36 100.0 30 .................................... AGAATCATTTGGTTATGTCAGTGTGATTGT 28208 36 100.0 30 .................................... CCAGAGGTCTACCGACTTCTGTCAGAGGTT 28274 36 100.0 30 .................................... CAAGATGAATTAGAACAGGACCGACTGGCG 28340 36 80.6 0 ................GG.........AC....GTT | CA [28360] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 95.8 30 GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Left flank : TCGAACCATTGAAGTTAATCAATATTTGACTAAGTTGGAACGACTGATTAGTGAGTCGTTAGCCGATGAAGATCGTAATCAGATTCATGATAGTTTGAGTAACTTATATTCAACTGTTCAACAACAACTTTTCTTAACGGACCTGCCACTGGAGGTAACTTACGATTTCGATATGAAGCACTTATTGAAATTTGCAAAAATTCATTTCGATGAGAAGTGGCAGACTAATCCTTATGATATAATTGAGTCAGTCCTAAAGGTTCATCAAGAGTGCGGTATTGAATCATGCGTGGTGTTGACCAACGTTGCGCACTATTTGACCGTCTCAGAAATGCAAGAACTTAAAAATAGCGTGCCAATGACCGGACAATCATTGTTACTGCTGGAGTTCTGCGTGATGAATCAACGTGATTATTATGATGTCGGGACATTTAATTATATTGATGAGGACTTTGTTGATTGGTACTGATGAAATGTTAGATTTCGATTAGAAATTAACG # Right flank : TAGTCTGCCACGTATGTTGTTACCATCGTTTAAAATATCATTATAGGTCGTTAACTATGTGAGGATTCTGATTTGTCGTAGTCAATTTAAAAAGAATCTGTATTTTGAGAATGAGAGCTCAGCTGTCATACTAAACATGCGAGGCGTTCACCACCGTCCACTAATCCACAATAATCTTCCGCACCCCACAAAACGCAACGTCCTGCTGGTCACCAAACTGCCGCATGACCTCGCCGTGTGTCACGCAAGCGATACAATCATATGTTTGAGCGTACTTACTCAGAGTTGTGAGCACTCGCGACTTAACTTCAGCGGCTGTCTCATAGTGCAGAGGACTGTCTGCAACTCGTTGGCCAGCATGTTGTCGATAAATCTGATAGGCCACGCTAGCTTGTTCGTCGGTGTCAGTTCGTGAACCGGTATTATCAGGTTGCCACTCGCGCAGTCCGAGCTCAACTTTTAATGGAATATCGTTAAACCGCACGATTTCTAGTGCCGTC # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Alternate repeat : GTTTCAGAAGGACATTAAATCAAGAAGGTCAAGACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 28298-28807 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYGV010000035.1 Lactiplantibacillus pentosus strain 7.8.11 assembly_contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 28298 29 100.0 32 ............................. TTATGGACACTGTGCTATCGCTGCCACAACAT 28359 29 100.0 32 ............................. GATGTGCCCATCTACTACTTGATAAGTTCTCG 28420 29 100.0 32 ............................. GTTCATTTTGCTCGATATTTTTCGTTGGTTTT 28481 28 86.2 35 .....A.........A..A......-... TTAACGAAACCGTATTCTGCTGATTTGTCCTGGCA 28544 29 86.2 33 ..G........A...A............T TAACACGCCGGTAGTCCCGTTTTTGAGGGATTG 28606 29 86.2 32 ..G............AT....C....... ATGACTGCGCACTATACTGAGTCAGTGCGACT 28667 29 75.9 32 ..T.....T......A...AA.....T.G AGGGGCACTCTCGTGAGAAGTGTAGACGCTAG 28728 29 79.3 22 ..G...TT...........A...C....T CGCTGAATCGATATCCGCCATT Deletion [28779] 28779 28 75.9 0 T..........A...A......A.-..TT | C [28800] ========== ====== ====== ====== ============================= =================================== ================== 9 29 87.7 31 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : ATATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAACTGGAACACCAGCGATAAACGCTTGTACGGCGTGAAATATATGGCTAGTCTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGAATGCTCCCCAAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGAGTAGCAAGCTATTGGATTGATTTGTTAAAATTCCGGATACAGGTCAAACATTCACGCCTATTAAACGTGGTTGTAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGTTTTGTTGCGTTTTATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTCGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TGTACCGATTCATGACATAATCAGCATTACTATCGCCTCTAATATATACTGGGATATTTCAGCATTTATACAGAGCGATGAACAACATCACTTCATCAACAGAGCAATTTGACTTCTATGAGAACCAACGGCAAAAAATTTAAGTTCACACCACCAATCTTCCTTGTGAATCAAGCTTCCATTACACAAACAGTGCATTTCTCAGATGTGTTCTAAATTTTTAGTCTTTCTAACTTATTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCTAGCGCATGATGTGGTTTTAAATTCTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATAGTTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCTTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGTATT # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31425-31819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYGV010000035.1 Lactiplantibacillus pentosus strain 7.8.11 assembly_contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31425 29 100.0 32 ............................. AATTTACGCTATCTAAGTTTATCAAACAAAAT 31486 29 93.1 32 ................T...........C GTGAGAACAGTTCACCACTCCATGAATCCCAC 31547 29 100.0 32 ............................. GTGGCAAACAACTGGACGCTAGCCTTGGGTGT 31608 29 96.6 32 .........................A... CGTTTCATCAAATTTGTCTCTGGGAGGGTTTA 31669 29 79.3 32 ..A.......T.C..A.........A..C CATATTGATTCAAGTAAGGTACGTCAAGCTAC 31730 29 79.3 32 ..A.......T..C.A.........A..C GAGCTACTGAGGAACTGGAGGAGAAACTAGAT 31791 29 75.9 0 T........A.A...A....A.....TT. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 89.2 32 CTGTTCCCCGCGTATGCGGGGGTGATCCT # Left flank : AGTTATTTGTGCGTGGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATCTAGACCTCACGATTGTTAAGCGCTTACAATTTATTGTTAATATTGCTGACAATCGTGAATTATACTGACAAGAAATCATCGACTTTCATCCGTACATTTTCGTCAGAACCCTAAACTGCTTGTAAGCGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTAATTCTATACTTCTAATATTAGCATTCAATGTTTGAATAAACATCTATTTTTGGAAGGACTTCGATGGATTTTTGATAAATTATGACGACTAGTTTGTATCAAGACAGTCTGATATGTCCAGTTTTGAGGTTTCCCAATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGAGACTTAGCCAATTTTGAATTGTTGATATACCGGGATTTGTTTAGT # Right flank : TTATACAGTTTTTAGGAGGGCAAAGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATATCCCGGATACTGGGATATTCCTGGTGGTTTAGCCATAAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTGAAAATTAGCAGAATTATTTGGGAAGACTCAGTTCTTGATACAGCAAAAATGCGCGTGTTTACAACATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACATTCTGAATTTATTTTTGTAAATTCACGGCAAACTTTGAATAAAGTAAAGGTCGTACCGTATTTAGAGAAAGTACTGTTGCAGTTTCTATAGATTAGGGAGAGTTGTACGGTGATAACTACACTTGAATGCGCATAGAAAGAATTTATAA # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //