Array 1 244449-244012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSC010000002.1 Planktothrix sp. FACHB-1365 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 244448 28 75.9 31 ..T..A...TC......C....-...A.. ACCTGTACCCACACCCTCACCAACGCCATCA C [244429] Deletion [244390] 244388 29 96.6 43 .T........................... ACCCGACCCCACACCTGTACCCACGCCAAGTCCCACACCTTCA 244316 29 86.2 43 TTA..............G........... CCCTGACCCCACCCCTGACCCCACACCCTCACCAACTCCATCA 244244 29 100.0 43 ............................. CCCTGACCCCACACCCTCACCAACTCCATCACCGACTCCATCA 244172 29 96.6 31 .................G........... CCCTGACCCTACACCCTCACCAACGCCATCG Deletion [244113] 244112 29 100.0 43 ............................. TCCCGACCCAACCCCAATACCTACACCCTCACCGACGCCATCA 244040 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =========================================== ================== 7 29 93.6 39 CCGACTCCAATACCAACACCGAGTCCCAC # Left flank : CTATAGCCGGGGGTCAAGATTCTGATCTGATTTTTGGGGATCAAGGAGATGATCTTTTATTGGGCGATCGCGGTGCAGATACATTATTTGGAAATCAGGATAACGATAGAATTTATGGGGGAAAAGAGAATGATTTCGTTACGGGTGGAGAGGGTGACGATCAATTATTCGGTGATTTAGGAGATGATATTCTTTATGGAGATTTGGGTGCAGATACGGTAACGGGTGGAGAGGGAAATGATCAATTTTATATTGGTAAAACGATGGGGGGATTTGCTCTAACTGAGGCTGATATTATTGAAGATTTTACGTTCAATCAAGATTCTATTGGATTATTAGAAGGTTTGACCTTTAGTGATTTGAATATTACTCAGGGAACTGGAAACTACGGGAATGATACGATTATTCAGGATAAAAATTCTAATGAATATTTAGCAATTCTTAAAAATGTAAATAGCAATAGTCTCAGTTCTGATGACTTTATTTTTAAAGCTTCTGAT # Right flank : ACCAGCACCTCTGAGTATCTTAGGGTTTAGTGCGGCTAACTTTAGTGTTAATGAAAATGGCACACCTCAAGTCAATGTGAGTGTAACTCGGACAGGAAATAGTGTGGGAAATGTGGGCGTTACAGTTAACCTTAATAATGGTACAGCAACCACCCCCGATGACTATAATAATAGCCCCATTTCTGTTAGCTTTACTGAGGGAGATATAACACCTAAAATTGTTACCATTCCTATTGTTGATGATGCTGTAGTTGAAGGAGATGAAACGATTGCTTTAAGTTTAGGTAATCTGATTGGGACTGCTATATTAGGAACTCAATCGAGTGCAACCTTAACAATTTTAGACAATGATGTCTTAACAAACCCTGGAACCTTAGCCTTTAGTATTGGCAACATCGATATTAATGAAAATGCGGGAACAGCTACCGTTACTGTTAATAGAACGGGTGGAACCGATGGAATTATTGGGGTGAATTATGCCACCAGTGATGGAAATGCGA # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGACTCCAATACCAACACCGAGTCCCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 306943-309517 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSC010000001.1 Planktothrix sp. FACHB-1365 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 306943 37 100.0 38 ..................................... AAAATTTGATAGGTATGTTGAGGTGTTAAAGCCATTAC 307018 37 100.0 33 ..................................... TTATCGGAGTCGAACCCACACCCGACCAACAAA 307088 37 100.0 36 ..................................... AGGATTAGGCGATGAAGAGGGAATTCTCCAATCAGA 307161 37 100.0 34 ..................................... TTCCTGATAAATCCATTTAGTCCCTGTTGCAGCC 307232 37 100.0 34 ..................................... ATCTGTAGACGAATTTCGGACATTAACCGGAAAA 307303 37 100.0 33 ..................................... GGGTAGCATCATCCCCATTTCTTTGAACGTGTC 307373 37 100.0 35 ..................................... CCTTGATTTTTATCTACGCGCAAGCGCCCACGATA 307445 37 100.0 35 ..................................... ACCTCCTACGGGCTTCGGAGATATGGTTTTTCGCC 307517 37 100.0 34 ..................................... AAATTAAATCTTTAATCAATTCCCTCTATGGACA 307588 37 100.0 35 ..................................... ATGTTCTAAACTTGCTGAACGTGAGGAACATATTA 307660 37 100.0 40 ..................................... AATAGATTTAAAAAAGATTCTTTACTTTACTATATTCCTT 307737 37 100.0 35 ..................................... CAACTTTTTCAGCCGGATTAATATCTATAGGAGGA 307809 37 100.0 37 ..................................... AAACAATTCACCCTCTTTAAGTAATTCCTCATAAGAA 307883 37 100.0 34 ..................................... TTAGGGTTCGCTATTGCTGTAAAATTAGTTAAAA 307954 37 100.0 39 ..................................... GGACATCTAAGAGAATGATTAGATTTTATGATGCTAAAG 308030 37 100.0 34 ..................................... TTTTTGCATAGCTTGACTTTTCAAAGAAGATGTG 308101 37 100.0 35 ..................................... ATTGCAAAGGAAATGCTATATATGATTGAGACACT 308173 37 100.0 36 ..................................... GTAAAAAAGTACCATTTTATCGGCAAGTCGCCGATA 308246 37 100.0 35 ..................................... AAATTAATTTCCCGAAGTCTGACAATTAAAGGATC 308318 37 100.0 34 ..................................... TTGATAGATTAAAAGATAAGCATCATTTAGTTCT 308389 37 100.0 33 ..................................... GGGTGACGGTGCGGCGGCGGGAATATGGTAACG 308459 37 100.0 35 ..................................... CTGGTAGCATTCCTTTTGGAGATTTTTCAGTCGTT 308531 37 100.0 35 ..................................... TTATTTTTAGATTTGGATTTTTTCTTAACAGCACC 308603 37 100.0 36 ..................................... AGATATAATTTGGAAACCCGTTTTTTTGCCACCGAT 308676 37 100.0 36 ..................................... TGCTACCCTAGAGAATGCTGGGGAGGGGGCTGCCTT 308749 37 100.0 32 ..................................... TATTGCAACACCACCAACGCGAAGGCATATTA 308818 37 100.0 32 ..................................... CCTGTTGTAATGGTTTTAGCAAAATTTAAGGG 308887 37 100.0 36 ..................................... TCATCTCAACGGCGCCGCCTTCCTCTTCCCATCGCT 308960 37 100.0 35 ..................................... ACTCAAGCGCCTAAACTTTATCAATTTGATTGGCG 309032 37 100.0 40 ..................................... AACATGACACCAAATGGAACCAGAGCGACTCCCAGGGCTG 309109 37 100.0 34 ..................................... AACATCTTGGAAAAGATTAGTGACAGGCACTTTG 309180 37 100.0 35 ..................................... TGACAATATTTGAAAATCCATCATCACTCGATAAA 309252 37 100.0 41 ..................................... TGGCTTTCTGACTGATACCACCTCTCTTTGTGTTTCTAGTG 309330 37 100.0 36 ..................................... TTCAAGGTTTGTTTAAGAGACGCTAACGCTTAACTG 309403 37 100.0 41 ..................................... TTTCGGTAAGTCCTGATCCCCCCAACGGCCGTAAGGAGGGT 309481 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 36 37 100.0 36 GTTATAATAACCACAAATCCCTTTCAGGGATTGAAAC # Left flank : GTGAAACAATTCCTTTAAGTCCGATGGCTTTGGGCTTAAGGTATCGAGTGGTGGTCGAAAGTAGTAATGATAGTGAGCTTCGGCGGATTCGTTCAATTGTGCCAGAAGCCTTTCCTACGGTGGTTGCAGGGCGACAAGTTGTTCAAGCGGGAGCATTTCGAGATCAATATCGGGCCAATTGGCTATTACAACAGTTAACTAGCAATGGATTAAGGGCGAGAATTGAGTTAATGAATTAGTTTGGTTGCTGGTGACAACCGATAGCTGTTCAGAATAAGGTGGGGTAGATTTAGGGTTCAAACCTATGTCTGTTCAGGGTTTGAAGTCTATCATCCCCCCTATATGGTTGTCGCAATTCCTGAAACCTTTACTGAAAGAGGGTTTTAGCTTTTTTTTATTTTTGCCTCTTGCTCAGTTGATGGCTGAAATGATATATTGGGATCAGGTTATCGCAATTGCACCTTGAAAACTAAATATATTAAGGGTTTCAGAAGCCTGCG # Right flank : CATCCCCCTTATCCCAATTTGGACTAATTTCTCATTCTTTTTCCTTCCCCTTGACTGCGTAAATATTCCCCAAATATTGCTAAAAATCCAGAAGCGATAATTAAGATTACACTTAAGGCATTAATATCAGGTTTCACCCCAGTTCTAATCCGACTAAAAATTTCCATCGGTAAAGTATTTGCCCCACTTCCAGCCGTAAAACTAGCAATTAAAAAATCATCCATACTTAACACAAAAGCCAGTAAACAACCTGATATAATCCCCGGCATTAATTGAGGTAATAAAACTTGAATAAACGCTTCTAGGGGAGTCGCCCCTAAATCTAATGCAGCTTCTTCTAAATGGGGATCTAAATCTGCTAATCGCGTTGAAACGACTAAGGCAACATAAGCCAAACAAAACACCACATGGGCGGCTACAATTGTCCATAAACTCAGGGGAATGGCAACGGCGGCTAAAAACACCAAAGTTGCAACGGCCATAGCAATATCAGGAATAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATAACCACAAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 849542-847276 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSC010000001.1 Planktothrix sp. FACHB-1365 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 849541 37 100.0 34 ..................................... TCTCCGTAGCGTTAACAAATCTATTCCTTCTCAA 849470 37 100.0 40 ..................................... AGAACAGAGGCAGAGAGACTTAGAGAAGTTTGAGCAGGCA 849393 37 100.0 36 ..................................... GATTTTTGCCATTAATCCAGGGAAGATTTGAGTCCA 849320 37 100.0 40 ..................................... GGGTAAGGATGGAGCGTTATTAGCGTTAAAAAATGATCTA 849243 37 100.0 35 ..................................... AGAAGGGTATACAGAGATGTATCGGAAGCACTACA 849171 37 100.0 44 ..................................... TTTCTTAATTCACGTCAATATCAAGATACCCCGAAGGAATTATT 849090 37 100.0 41 ..................................... TGAATGATGATAGGATTGAGGATTTTGTTAGAGGGGCGATG 849012 37 100.0 34 ..................................... TAAAAAGTCGTCAATCTATTTATGACTGGTGTGA 848941 37 100.0 41 ..................................... CTTTGGTTTGGTGAACAGATAGAAGATGTTGAACCCGGTTT 848863 37 100.0 35 ..................................... TGGATCAGTGGATCAGTTTTCAAGGGGAGGGGTGG 848791 37 100.0 33 ..................................... CATTCATTGGGGGTAAGGATGAGAGAGTTAATG 848721 37 100.0 39 ..................................... TTTTGTTTCAAATTTAACCCTCTCAACCATCAATAAAGG 848645 37 100.0 38 ..................................... TTCGGAAGTTATAAAAAAAGCATACTCAAACCCCCCGC 848570 37 100.0 40 ..................................... CTTCCAGTAGACGGGAAAGATAGCATCAACCGTTATAATA 848493 37 100.0 34 ..................................... TCCACAAGGTGCAATAACTGTGATTAAACCGGAA 848422 37 100.0 35 ..................................... GCTGGAGCGGCAGTGATCGCGCTTATCCGTTCCCC 848350 37 100.0 37 ..................................... AACGGAACACTACACGGTAAAGGATCAGACAGATGAA 848276 37 100.0 35 ..................................... TTTAACTGCCTGATGAACTTCTCTAAATTTGTCCT 848204 37 100.0 40 ..................................... CCGATAGAACACTATGATACAGAAAGAGGTGATAACCCTA 848127 37 100.0 33 ..................................... CCGAATACGTTAAATCCTGCTTTGTTCGTTTCT 848057 37 100.0 39 ..................................... TGTAAGCGTTCTTTCCTGTCGTTGAAATACATGATTCCA 847981 37 100.0 40 ..................................... TCTAATATTCAACCCTACTGGAAAATCAAACGCATTGGTG 847904 37 100.0 36 ..................................... GCTTATGCCTGAGATAGCTAAGGGTAAGAGCGATAA 847831 37 100.0 40 ..................................... ATTTTTTTGAATAGAATCTAAATTGGTTAACTGTTGTTGT 847754 37 100.0 41 ..................................... ATTTTACTTTCTGGTATCCCTTGCTTATGAACAGGTTGAAA 847676 37 100.0 35 ..................................... TAAAACTGACTCCGATACTGACGTAACTTCTATCT 847604 37 100.0 35 ..................................... CAAAACTCCCGCCAGAAGCCAGCGAAGAACCGATC 847532 37 100.0 34 ..................................... AATGGTGTAACTGTAGTCAATTTCAATTTGGAGG 847461 37 100.0 40 ..................................... TCTCAAAAAGTATGAACCCCAAATTAATTCAGATCTTTTT 847384 37 97.3 35 ....................................G TGCAAGAAGAAAGCCCTGAAGGGCTTACTACAGAG 847312 37 70.3 0 A.......TGA........TT.A......TA....TA | ========== ====== ====== ====== ===================================== ============================================ ================== 31 37 99.0 37 GTTGAAATCAGCTATAATCCCTTTCAGGGATTGAAAC # Left flank : GAACAATTTGATGCCTTGGGTTATTTAAACAAACACGCGGGGGATTTGAAAGATAGATTTGCGGTAGAATCAATTACAGGTTCGCAAATTAAACCGATTTTACAGCGCTGGGGTTTTGCGGGAATTGGTATGATTAAAGATCCCCTTTTACCCCATATTGAATTTATCCAAGTTCAACAAAATTAAGAGATTATTGAAATTGAAGTCAGAAACCGTCTCATCCTCTAATATTTGAGTATCCCCCGAAGTTGCGCTAACCTATCGCTGTTGAAATTCCCAGGGCTGAAATTCACGTCTGAAACTGTTGTCTGTTCTGGGTTTGAGGTCTGTTGAGGGTTCAATGGGGTTGTCGCAGTTCTTAAACGCTATATCTGAAGAGGGTTTTAGCGTTTTTTGATTTTTGCCTCTTGCTAAGTCGATGGCTGAAATGGTATATTCAGATCAAGTTGGCGCGATCGCACCTTGAAAACCTCATAGATTAAGGCTCTCAGAAGCCTGCG # Right flank : ATATTTTAGGCTTGATTTTCCAAAATATCTAATACTGCTTTAGGCGATAACTTATCCTTAAACCATACCACAGGAACCGGGAGACGATTAATATTAATGCCAGCATTTTCTAAATTCAACCGTTCAGAAATCGCTAAAATTAAAGTATCACATCCAGAACGTTGAACCTGATAAAACTTCTTCTGTAAATATTCCGGTCGCCAATAGCCAATAATCTCTAATAAAAACACCCGTCCATCAGGATGAACTAACCGAAAATCAGGAATCATCACACTCCCCGGAAGGGGAATTAAATCCACTTCACGTTCTAATTTCCATTCAGTTTTTAACTTATTCCAACGTTCAGCAAAAGATTGTTCAATCATACTATCATAGGGTTTACCCGGTGGATAATGACTGACCAAACCGCAATCAGAATTTAAACTAAAATAACCCGTTCTCACCACACGAGTATAGGGGTCACGTTGTTGTAATTTCGCCTTTAAACTCCATTTTGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAGCTATAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 55835-57621 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSC010000032.1 Planktothrix sp. FACHB-1365 contig32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 55835 37 100.0 39 ..................................... CGGTTGGCAAGTTCGCAGGAGAAAGGGTCAAGGTCGGGG 55911 37 100.0 35 ..................................... TGTGATTTTCTTAATATCCTCTTCTGGCATTCGCT 55983 37 100.0 37 ..................................... CTCGATGCAACTGGACGGGTCAAACCCCAAGATTTAT 56057 37 100.0 36 ..................................... GTACAGGAAACCAGAGACTTGAGACAACCACCTCAA 56130 37 100.0 35 ..................................... TTAACATATCCCAGATATAAACCTTCATATAAACT 56202 37 100.0 37 ..................................... GCGATTCTATGGCCTGGAGTTATCCCCTACGATTCCA 56276 37 100.0 39 ..................................... AGCCAAACTTTTAAGGGAGTCATCCCCCCAGTGAGAATT 56352 37 100.0 43 ..................................... GCAGCGCTGGCATGAAGGCAGCCATGGCAAGGGGTCAACATTG 56432 37 100.0 35 ..................................... ATCGGGTAAATAGTAATACTATCTTTTGTGTATGC 56504 37 100.0 32 ..................................... ACAATAAATGCCTCAATCTAAAAAAGGGAAAT 56573 37 100.0 33 ..................................... AATTAACCTTCGTGTTCCAATTTATGAAGCCAG 56643 37 100.0 35 ..................................... AAATACTCACCCGGATGAAGGTTAGCTAAATCGCA 56715 37 100.0 35 ..................................... GGGAGTGTAGCTTTTGATGATGGCGGTATCATAGA 56787 37 100.0 32 ..................................... CTTTGGATTCATTTTGCAGTAAGATAATAGTC 56856 37 100.0 34 ..................................... GCCTGTACCTGCTGTCGCAAAAGCAGAACCCGCA 56927 37 100.0 33 ..................................... TTTGCCCTTGGTAACGGTTTCCCGTCCGTTGAA 56997 37 100.0 40 ..................................... ATTGTTGTATTCCCAGTCAACGATATGTTTTTGATTAGAA 57074 37 100.0 35 ..................................... AACTTAATGTGGGTAATAGGCTTTTCAAATCTACA 57146 37 100.0 34 ..................................... AAGTATTGAGTGACCGCAAATAACGTGATTATAG 57217 37 100.0 35 ..................................... CAAGCAATTTCGGGTGATCCCAGAAAGGTGAAACT 57289 37 100.0 39 ..................................... TTCCTCAAAACCTTTAGAATCAACGCTTTTAAGTAATCC 57365 37 100.0 35 ..................................... TTAGATAAACTGGCTACGGATTGAAGAGCGTACTC 57437 37 100.0 37 ..................................... GCAAATATTAGAAAGTGGGCTATAAACCGATTGTCGA 57511 37 100.0 37 ..................................... CAGATTAATTTGTAGTACGCAAAGCAATACAACAAAA 57585 36 75.7 0 A.................-TG......CA..A.GG.. | T [57611] ========== ====== ====== ====== ===================================== =========================================== ================== 25 37 99.0 36 GTTATAATAACCATTAATCCCTATCAGGGATTGAAAC # Left flank : TCTCACAACTCTCTCCCATCTCATAACTAACAGATTTGATTGTTTATCTGTCCTGTTTCACATCACTCCCTTCCTGGAACTAATACTCATATTATATGCTGTTTTTTCTAAACTTTTTTCAGGGGGATAACCGTACTTTTTAAACGCTGTTGACAAAAGATTAAAATTTGCTATAACTAGATAGAATGTGGGAAATTTGCGATCGCTATTGAAAACCAACCTAATTTGATCAATCTTTTGGCTTCCACTAGCGACAACTGATAGGTGTTGGCAACAAAGAAGGCAAAATTTAGGGCTGAAATCTTTGTCTATTCTGGGTTTGAAGTCTATCTACTTGATTAAGAGGTTGGCGCAAGTTCTGAAAGTCTTATGGGAAAGGGATTTTAGGATATTTTTATTTTTACCCCTTGTCAAGTCGATGGCTGAAATGGTATATTCTGATCAGGTTGTCGGAATCGCACCTTGAAAACTAAATATATCAAGGGTTTCAGAAGCCTGCG # Right flank : CTCTTGCAATCGGGAATGGGGAATGGGGAATGGTTAAGAGTCAACACCCCTCTTTTCCACTGATCTGTTTAAGAATGTTGTGAATCATTTAATATAGTGAAATCCTGTAATAATTTATGTTTGGTTTAATGATTCATCAACAACGCTTTTCCCGATTGTTATTGAGTTTACTGATAACTTTTTCCTTGAATCCTTTCCTGTTAGTGTCTGTCGCTCGTTCTCAAACTTTAGCTTATTGTAAATTATCTGCCCAAGCGATCGCTCAAAAAGAAAGTTTACGACAAACCGCATTAACCGGAGATGCCCAGGCTATTCAAAACTATAATACCATTATAATTCAACACGCTCAACAAGTCAATCAATGTCGTCAACGAATTAACCCCAAAACTCAAGCGATATGGTTAAGATTATATCCCTGTGATGCTCGACCCGGAGAAATTGAGCGGATTTTAGATAATATTATTAATAAAGGATATAATAAAGTTTATTTAGAAGTATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATAACCATTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 61128-60051 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSC010000012.1 Planktothrix sp. FACHB-1365 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 61127 37 100.0 37 ..................................... TAGTTCCACGGGTTGAAGTTCCTATGATTAATTTAGA 61053 37 100.0 40 ..................................... AAAGTTATTGAGTTCATCAAATCTTTCATTTTCTAGTTGA 60976 37 100.0 35 ..................................... CTGGGAGCGTAAAGCCCAAACTCATCAATCATAAT 60904 37 100.0 40 ..................................... TAGCCGCAGCCCGTCTTAATGCCATAGCTTCAGCATTGCT 60827 37 100.0 36 ..................................... GTGAACAACTTGAATTAAATCTTGACTGTGAGCAAA 60754 37 100.0 35 ..................................... ATAGATTGATTCAATAGTCAATAAAGAAGTAGAGA 60682 37 100.0 36 ..................................... CGAATACGACTCCAAAGGTAAAACCTACGGGATATT 60609 37 100.0 37 ..................................... ATCGTAATCCTTGATGATTTGGTATGGCGTTCATTTT 60535 37 100.0 37 ..................................... TGCTTATTAACTTGTGTCGTATTTTCTCCCCAAACAG 60461 37 100.0 36 ..................................... ACGAATCGTTGGAAATCGCTTATCCTGAACTTTTAG 60388 37 100.0 37 ..................................... TGATGATGTTTGAGTTGTTCAATATTGTAGAAATCTT 60314 37 100.0 42 ..................................... CCTAATCCACCTTGAGAGTCATAGAGGTTTAACCCACTGTTA 60235 37 100.0 35 ..................................... TGGGGATGACCGTCGCCCGATACATTACTTTTGCT 60163 37 100.0 39 ..................................... TTTAGATGAACTTTCAGAGGATAGTGATCGCACTCCCAA 60087 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 100.0 37 GTTTCAGTCCCGCGAACGGGATTCTATTAGTTGAAAG # Left flank : TGTGAATTCTCCTGAATCTGCTATTCAAACGGTTAAAGATTGTTTAGCTAAATTAATTGACAAAATAACATAAATTTAGTAAAATTAAAAGAAATTGTATGTTTAATTTTTATGAAAATAACCGATTTAAACCAAATTCCAGAACAGGAAGTTTCCCATAATCCAGCGATTAAAAAAAAGGTGATGTTGAGTTTAGGAGATTTACCCCATTTAACCAATTTTTCTCAAGCCTGTTTTGCCCCCGGACAAGTGGCGGGTGGTCATTCCCATGCTGATATGTGTGAAGTTTTTTTTGTAGAATCGGGTTGGGGAAATATGGCGATTAATGGTACAGATTATGAATTAAAACCAGGGGTTTGTATTGCAGTGGAACCTGGGGAAGTTCACGAAGTCACCAACATAGGAAATACCGATTTAATTTTAACTTATTTTGGTTTACGCACCCCGTAGTAAGCCCTTCAGGGCTGTCTTTCAACAGTAGTTCAATGGTCAATCTTTGG # Right flank : TCTGCCCCCTGAAACTGGGACAGAGTAGGCATTCTGAAGCCAGTTTTCGTGAACCTCATTTTTTGCCTCGTTTCAGCCTTCGTTATTGCAATAGATTAGCAATAACTAACCGAATTCAACAATAAAAACTATTGAATTGTCAAGGTTCTGGCGTTTTTCGTGAATCCCCCCAGGATTTAGCCCCCGCTTCGATTCACGAAAACTATAGTAAACCAAAGACAACCCCTTGTCAAGAGTAAAAGTCTGTGATAAACAAAAACCCTGTCTTTAGCAAAAACAGGGTAAGCTATTACGCATCTAAATCCAATACTAAGACGGGCAGGATGCCCATCCCACAAGAAGATCCGAAAAACTGACTGTCAAATAAAATGCGTAGCAGCTTACAGTCAATCCTATCAAATACAACTAAATCACAATCGCCTGATCTTGACGGGGTTGCTCAGAACCATAAGTAATCGTTCGTTTCCGAGAACCCGCATCCAAAACATAAATCCGCACTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCGAACGGGATTCTATTAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 26735-27345 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSC010000046.1 Planktothrix sp. FACHB-1365 contig46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================================================== ================== 26735 36 86.5 86 .............C.-TA.............T..... CCTCTATGTAGTAAGCCCTTCAGGGCTTTCATTTAGCAGTTAGTAGAAAGTTAAAAACAATAATTGTATGATCAGGCAATCGACTC 26857 37 100.0 37 ..................................... GAATGGATATTAGGCAGAATTATTGGACGGTTAGCAG 26931 37 100.0 37 ..................................... GATTGCTTCGGGATTGGGAGATTAAAAGAAAAGAGTT 27005 37 100.0 41 ..................................... ATGGCAGAATTTAATCCATCCACTCAATATGCGCTAGAAAT 27083 37 100.0 35 ..................................... AAGCCAGTTTTTTTAGGTTCTCGCGCTGTTCCTGT 27155 37 100.0 39 ..................................... CCTTAGCCAATAATTTCAAGCTGGCAATATCAACGGGCT 27231 37 100.0 41 ..................................... CAGCAACGATAAAAGCAATCGCTTGGATTATGTTAGTTTAC 27309 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================================================================== ================== 8 37 98.3 45 GTTTCAGTCCCGCAAGCGGGATTCTATTAGTAGAAAG # Left flank : CAATGGGAAATATAGTAATTTCCCCTCAATTTGATTTAAGTTGGCGGTTTTCTGAAGGATTAGCGATGGTTTTAGTTAAAGATAAAATGGGATATATTGATAAAACGGGAAATATAGTAATTCCTCCAGAATTTGATTATGGGTGGGATTTTTCCCAAGGGTTAGCGGTAGCCAGAAACGGCAGAAAATGGGGTTATATTAATCATCAGGGAAATTTTGAGATTGCTTTACAATATGAAGAAACTGCTAATTTTTCCGAAGGGTTAGCAGCCGTGAAAATTAAACAAAAATGGGGTTATATTAATCAAAAAGCGGTGATAAAAATACCCCTTCAGTTTGATAGTGCCAATGAATTTAAACAGGAATTAGCAGCCGTTAGAATTAAAGATGAATGGGGGTATATTAATTCAGCAGGTGCATGGGTTTGGCAACCTACAAAATAAATTGTTAATTTTAGTTGAATTGTTCAAATAATTACGCATTGAGAATTAATAAATAAT # Right flank : GACTGCCCCCTGAAACTGGGACAGAGTAGGCATTCTGAAGCCACTTTTCGTGAACCTCATTTTTTGCCTCATTTCAGCCTTCATTATTGCAACAGATTAGCAATAACTAACCGAACTCAAAAGTAAAAACTATTGAATTGTCGAGGTTCTGGCGTTTTTCGTGAATCCCCCCAGGTTTTCGCTCCCGCTTCGATTCACGAAAACTATAATAAACCAAAGGCAACTGCTTGTCAAGATTAATTTTCTATGGTAAATAAGCAGCGTTTCTCAAATCCATAGCAAAAATTTGATAAAAACGTTATGGTGATTCTCTAAACCGCTTGATTCATATCCAGAAATCCTTGAAAAGGAGAATAGTCTCATGTCAGATATTCTTAATGCTCAGTCACCCCATCATGTTGTCATTGTCGGAGGTGGATTTGGCGGACTCTATGCAGCAAAAACCCTGGGACGTTCTTCCGTTAAAGTCACGTTAATTGATAAACGGAATTTTCATCTAT # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.62, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCGGGATTCTATTAGTAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 123828-124513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSC010000013.1 Planktothrix sp. FACHB-1365 contig13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 123828 36 100.0 34 .................................... CCAATACCTTTAGGGTTTTCAAGAGCTTTACCAT 123898 36 100.0 35 .................................... GTAGTGACAGTACATCTGTCTTTTTGATGTACTTT 123969 36 100.0 41 .................................... TTGGTCTATAAGACCAAAGAAGACGTGACTTTGGGAGTAGT 124046 36 100.0 34 .................................... ACTCGTTGGGGAGATGAAGCCCTTAATGCTTGGG 124116 36 100.0 33 .................................... GCACTCCTTAAGTGGTTTGAGGAAGTGAACTGG 124185 36 100.0 41 .................................... TCATGACAAACATCGCCTCTTTTATCGTGGGTTTCGTTTTT 124262 36 100.0 37 .................................... AGAGATGTCTAAATATTCTTGCGGGCTTTCCTTTGCT 124335 36 100.0 35 .................................... CAATTCCATCTTCAGCATTTTCAGGCCCAATACGG 124406 36 100.0 36 .................................... GAGAACAAGCGGAGTCGAAAGCTGTGTTTTCGCTTG 124478 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 100.0 37 CTCCCCACTCGCTGGGGAAATTAATTGATTGGAAAC # Left flank : GAACATTTAAACACGGCGTTAAATTGGTTAGACCAACGAAAACGCATTGAACGGAGTTGGAGTTATCGGATTTTAACGGTACAATTATCCCGTTCCGTTCCCGTTGCTAATTTAACCCGTTTTTCTCCTCTCAACCCTGTTACGTTGTTAACGATTTGTCACCATAGTTTATTTGCGTAAGTTAAGTTTAAGCAGGTTGGCTTGGTAAGCTTCGCAATCCCTCTGGGTCAGGGTTTTAGTTTGGGAGAAGGAATCGGAAGCAGAGGTTTGATGAGGAAGATGAGGCAGCTTAGAACAGGTAATCAACGATTTTATGGGCTTGCGAGGCTCAGAGAAAATGGCTGTAATACTGATTCTCTCATTGGGAACCCCGATATGGCTCTGGATAAAGGTTCTGGCGATTTTAGGAAGGGGCAAAATCGGGTTTCAGCCAACGAGTTTCCTGAGCCTCGAAAATGCCTACTAGACAGTCGATGGTGTATGGGTTTAAAATGGGAGGA # Right flank : CATATTGTTATGACCAATCAGTGTCAACTTTAAGGCTAAAAGTAGGCTAGGAAATCGAAAGTTCATTGATTTTTTTAAGCGTCCTAGATCCCCCCTAACCCCCCTTGGAAAGGGGGGAACAGGAGATCAAAGTCCCCCTTTTTAAGGGGGATTTAGGGGGATCTAATCTTAGCTATAATCAGAGGTTGTCCGTAATATAGCGCTACGCATTACGGTTAGGACATTTCTAAATTCTCAAACCCTTTCACTTCTTACTGTTCCCTGTTCCCTGTTCCCTGTTCCCTCGCGCGTAGCGCTATAGTATCGGGAAATTGAGCAACAAAATCTATCGTTTAAATCGTTGTTTAATTTTTAACCATTCATCCTCTAACAACGTATTTAAAACAGGAACTACAATTAAACTTAATAAGGTCGATGTCATTAACCCCCCAATAATTGCAACCGCCATCGGTTGTCTTAATTCTGCTCCTGCTCCTAACCCTAATGCAATCGGTAACATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 87046-88475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSC010000005.1 Planktothrix sp. FACHB-1365 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 87046 37 100.0 35 ..................................... GAACTGAGAAGGGTAGAACGGCGTTAGAAACCCGT 87118 37 100.0 35 ..................................... AAGTATCCAAAACTTTAAGACGCAGGAAAACAAAG 87190 37 100.0 35 ..................................... GCGATAGTAGGAACTCATTCCACTCCGTCGATCAA 87262 37 100.0 36 ..................................... GTATTCTTATCAATCCTCGATGATCGACGCTGCAAG 87335 37 100.0 37 ..................................... TATTTTGTTCAGCTAACAGATTTTTTTGAGCATCATC 87409 37 100.0 40 ..................................... GTAAACTCCCCAGGGACTAGGATTTTTTGGGGTGCTACGG 87486 37 100.0 40 ..................................... TCAATCTTAGTCAGGACGTGGAGATATAGAGTTTCTCGAC 87563 37 100.0 34 ..................................... AACGTTTAAGCCACGAATTCCCAGAGGCTGCATT 87634 37 100.0 36 ..................................... CCTTTTGGAACATCCAAGCAAACATATCCTTGATAT 87707 37 100.0 34 ..................................... TTGTAGATATGAAACAAACTTAATTTTATTCCCG 87778 37 100.0 37 ..................................... GGGATTTTCCAAGACATCCTAATTTTTGGACAAACCA 87852 37 100.0 34 ..................................... TACAGGTGGTGGCGGTGCTGACATTGGACTATCC 87923 37 100.0 33 ..................................... AGGATATGCTGTCGGAATATCCCATTTTGGGAA 87993 37 100.0 36 ..................................... AGACTATTGGCTCATCATCTACATACTCAGAGTGTA 88066 37 100.0 40 ..................................... TGCCTTACACCGCAAGACCTCTGATTGTTTTTTGTGTAGG 88143 37 100.0 38 ..................................... TTTGTCAGACAGGATGGAAACTATTTGATATTCCCTGC 88218 37 100.0 35 ..................................... CTAAAGCTCATAATATCTTCCTAGATAAATGGCTA 88290 37 100.0 41 ..................................... AAGCTTGTAAATTACTCTTACTTGCGTCTAAAAACTGTAAG 88368 37 100.0 34 ..................................... GACGAAATTCAAGCTTGTCTACATCGATTTTCTG 88439 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 20 37 100.0 36 GTTATAATAACTATTAATCCCTATCAGGGATTGAAAC # Left flank : ATTTCTGAGGATAAACGCCGCACGAAAATTCATTCGATCTTGAAATCCTATGGTCAATGGATGCAATATAGTGTGTTTGAGTGTGAATTGACCAATACTCAATATGCTAAATTGCGATCGCGTCTCAACAAAATTATTAACCCTGAAACGGATAGTATTCGCTTTTATTTCCTCTGTGCTTGTTGTCAGGGTAAGGTTGAACGTATCGGCGGCGAACAGTTACGGGATCATTCGATTTTCTTTGCTTAGTCGCGCCTACCTGTTGCTGTTGGGAAAAGAAATGCTAAAATAATCGCTGAAACCGTTATCGGTTCTGGGTTTAAACTGTTTCGCTCATCTTTTGCGGTTGTCGCAATTTTTGTAAGCCTTGTCCTGAGAGAGTTTCAGCGTTTTTTTAGTTTTGCCTATTGTCAAGTCGATGGCTGAAATGGTATATTCTGATCAGGTTGTCGGAATCGCACCTTGAAAACTAAATATATCAAGGGTTTCAGAAGCCTGCG # Right flank : CCTGTCTGTATTTCTTCCTATCAAGAAGCTTAAGATTGTTAACTAAATTACTCAAAGCTAGATCTGGATGGTATTGGAAGAGAAGATGAACATGATCATCTTCACCATTAAACTCAATCAACTTACAATCCCACTTTTGGAGTAACTCCTCAAGGATTTCGTGTAAGCGATTCAACATCTTAACAGTAAAAACCTTACGTCGATACTTAGTTGTCAAAACCAAGTGAACTTTGAGATCGCTAACAGATCTTCCTTTACTGACAAAATCATTTTTCATGATTCCCTATATCTAAAAACTTGTGTTATAGTCAGTGTATAGCAAAACAACAACACCCAACTAAGGAGGTGATTTAAAGTGCTGAAGGCTACAAAAGTTAGACTCTATCCAACACCCGAACAAGAATTAGTATTAGCCAAGTCATTTGGCTGTGCAAGATCGCAAAAGGAATTTTGCCTTAAATGCCTGTATTCAGCACTATCAAGAAACTGGAAAAAACCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATAACTATTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 2 196462-198909 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSC010000005.1 Planktothrix sp. FACHB-1365 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 196462 37 100.0 35 ..................................... CTATCTCTAAGTCTCTAATTTCCTGTAACGCTTCC 196534 37 100.0 36 ..................................... GAATAATCTCGAATTTTTGTGTACCCTTTCCCTTTA 196607 37 100.0 37 ..................................... GAATATCTTCTTGATCCGCTTTGTACCATTGCGTTTT 196681 37 100.0 35 ..................................... TAATAATTTAGGAAGTAATCTCAAGCAGGCAACAA 196753 37 100.0 35 ..................................... TTTTGGGCGATCGCCGAGAAAAAATGGATTGCTTT 196825 37 100.0 36 ..................................... TAGACCGAAACTAGATCAAGCCAAGGGAACCATATC 196898 37 100.0 31 ..................................... TCTGTATTGGGGATGTTGATGATTTTGAGGA 196966 37 100.0 31 ..................................... CAATAATCGAAAGACCGAACTCTATTGGCAG 197034 37 100.0 38 ..................................... ACTAAAACTATCAATAAAATAACCTTAAAAAATTCCTC 197109 37 100.0 32 ..................................... AGATTGGTAATGATTGATTTTGGGGACTGAGG 197178 37 100.0 34 ..................................... AAAGTCCTAGACTTTCTTCTTGTACCAACTTCCT 197249 37 100.0 40 ..................................... TATTTCTCTGCTATTCGAGTTGGGGGAGGGAATGTGTATC 197326 37 100.0 47 ..................................... ATAACGGGTAACTTGTGTTTTTCCCAGAAGGCGGAATCTTTAGAAGG 197410 37 100.0 41 ..................................... GTATGACTACGAACTAGAAAACGGATTCAACCCTGAAACAG 197488 37 100.0 36 ..................................... AGTGACGATAAGTTAATGGACTTTGCGCTAAACGTG 197561 37 100.0 36 ..................................... AAGAGGATATTCAAAAGGGCGTTTCACCTTCTGATC 197634 37 100.0 33 ..................................... ATAGCACTCCTGAAAGTCGTTTATGCAATTTTT 197704 37 100.0 38 ..................................... AGAGGGGAAGGGGGAAAACAAGAGGTAGACGGCTTGAA 197779 37 100.0 35 ..................................... TTGATATCGCAAACTCTTTCTTAGTAATACTAGAA 197851 37 100.0 38 ..................................... TATTCCAATTTCTGATAATGGCGTAAGCCAAAAACATT 197926 37 100.0 34 ..................................... TATCAATAATTCTTCCTGATGAGGGGATATATTT 197997 37 100.0 36 ..................................... TTGTCGTAGAGCAACCCCCGAATTTCAGAGGGGACG 198070 37 100.0 35 ..................................... GATCTTAACGCCGCATCACCAGAAGAAATCAGGGA 198142 37 100.0 35 ..................................... AAATTGCTACTCACGAACACCCCAGAATTCCAACA 198214 37 100.0 36 ..................................... CTCACCTCCTGACAACTGAAATCGATGCTGTTTTTC 198287 37 100.0 34 ..................................... CACCGGGGGAAAATTTAAGCCACTCAAAAAAGGG 198358 37 100.0 40 ..................................... TTTTCTTTCTTAGAGATACCCTTCGTAGAGGCCGTCGAAA 198435 37 100.0 40 ..................................... TGAAATTACAGAAACCGATGAATTTACTTATTATTATGAA 198512 37 100.0 34 ..................................... CGACTCACCATCTTTGTTGATTCCATCATATCCA 198583 37 100.0 34 ..................................... CAGTATATCTTCCAAAAATAGAATTTAAAATACC 198654 37 100.0 36 ..................................... GGCAATCTCAGATTCAACTGAGGAGATTTGTGAGTC 198727 37 100.0 36 ..................................... GTGGTGTTCATGTTGTGCCAGTGGTAAATGTTTGAA 198800 37 100.0 36 ..................................... TTTGTGGTAGGCTGCGATAGTTGCGAGTCTGATTTG 198873 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 34 37 100.0 36 GTTATAATAACCACTAATCCCTTTCAGGGATTGAAAC # Left flank : AGGGTAGGCGTTTCCCATGTTTGGGGTTCATAATAAGCAAATACAAGCAACACAAAAACTATCGTTTCTGGAGACTTAGGAACAATGAATACAGACTTAACCTACGGATTATTATTGGCTTTGATTAATGGCGCGATTTGTCTATTGTTACCTGCAATTGTGTCTTATCTCCAACGTCAACGCCAGAATAATGATCAGTCATCTGTCATGACTCAGCAGCAAAACTAATGGATTTTGACTACTCTAAAGTTGCGACAACCTATCGCTGTTCAAAACTTATATGGAAATTTCAGGGCTGAAACTGTTGTCTGTTGAGGGTTTGAACTCTATTGGTTATCTTTTGAGGTTGGCGCAACTTTTAGAAGTAATACTATATAAGGCTTTCAGCGTTTTTTGGTTTTTCCTTATTGTCAAGTCGATGGCTGAAATGGTATATTCAGATCAGGTTGGCGCGAGCGCACCTCGAAAACTATATAAATTAACGGTTTCAGGAGCCTGCG # Right flank : CCTAGAATAGATAAGTCCTCAGCATTATTTATTATAAGCAATTTTGTTCCTAGAAGGTTGATCTGCTTCCGGGTATGGCTCTCGGCCAAAATCGAACCGCGAAAGAAACTAACGCCATTGCTTGGTTAAGTTGTTGCAGTTGTCGTTGAAGTTGCTTATAATTTTGCCTGAGTTGAGCACTTCCCTGTTGTCCATAATCAATAAAATTCGGTGCTCTTTCTAAAACAAATCGGGTGTTACGCTCCATTAAAATTAACCGTTTTTCTAAACGATTAATCATTAAAGTAAACAGCCAGATTTTTCGAGCGATATACAAACAGACTAAAGAAATTAAAATATTGATGATAATAACAGTAATCAGCATTGTGATACTTTGATCATAATCAAGGATTGTATCATCCGTCAACTACTTGTATTGGCTATCTTAAAGAGATTGAGGAACTAGAAAGGAAAAACCCCTCAAAATGTTAACACTTTAAGGGGTTTTATCGAGTGCCAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATAACCACTAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 3 228437-227057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSC010000005.1 Planktothrix sp. FACHB-1365 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 228436 36 89.2 35 ................T..-...........A....C GTAGTAAGCCCTTCAGGGCTATCTTGTAGCGGGTT 228365 37 97.3 37 .C................................... CTAATAGAAATCATGATGGTTTATTGGATGTTTTAAC 228291 37 100.0 35 ..................................... TATCGAATATCCTGGGGAAAGCCCGCTTTTGTTTA 228219 37 100.0 37 ..................................... GCGGTTTTGTCATCTGGTTTAATGACTTTTAAATCAA 228145 37 100.0 37 ..................................... AAAAAGATCACCAGACTATCAGTTTTATTGCGGGTAA 228071 37 100.0 37 ..................................... AACCTAACACTTGAGGACATTGTAACAGATGAAAGAT 227997 37 100.0 41 ..................................... TAAATATGGGTATAAATCAGAATATACAAGTTTTAAGGGAT 227919 37 100.0 35 ..................................... GTGTGAATGTAACAGTTTCCCGGTGGTGTTTTTGT 227847 37 100.0 38 ..................................... AAGCAGTTAACTTGCTTCTTTCTTGGGGCTATTTTTGC 227772 37 100.0 39 ..................................... CAAACCCGCTTCCTTCACCGAGGAAGAAGACTCAAAATC 227696 37 100.0 37 ..................................... AAAGCGGGAAAACTTGTGCGGCGAAGGAGATCGCCAG 227622 37 100.0 35 ..................................... TTGTTCTAGGGGAGTTAATAAGTTAACTGGCGGTT 227550 37 100.0 41 ..................................... CACGAATTAGCACAGAAGTTAGGAGGATTACCTAAAACTGT 227472 37 100.0 39 ..................................... TGAACACAAGAAATTAGTTAGAAATGCGAAAAAAGTTAT 227396 37 100.0 43 ..................................... CGCACTTTGACATTTCAGACTCAGTTGCAAATATTGTATAAGT 227316 37 100.0 37 ..................................... TTAAGATTGTAACGCTCTAATAGTTCCTTAATCTTCA 227242 37 100.0 37 ..................................... TATCCCCTCAAAAAGCAGATTCATTGACTATTTTCTT 227168 37 100.0 38 ..................................... TAAAGCAATTTCTTGTATTATTGCTTGGCTTCCTGCTT 227093 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 19 37 99.3 38 GTTTCAGTCCCGCGAACGGGATTCTATTAGTTGAAAG # Left flank : CAATTTCCCAATCCATTCAATCCAGAGCCGAATAAATTAGAAAATTCTACCTCTCAATCTTATTCTATTCAACAGGATAAACAATCCCATGATTTTAGGTTTTGATCCCGGTCGAGAAAAGTGTGGAATTGCCGTGATGGGTGAAGATTCCCAATTATATTATCATCAGGTAATTTTAGCATCGGATGTTCCTACAATAATTCAATCTCTCTGTCAACAATTTACGATTGAAACGGTAGTCATGGGGGATCAAACCACCTCAAAACTATGGAAACAAAAACTAACTGAAATTTTGCCAAAATCTCTATCTATTATTCAAGTTAATGAACGATATTCTACCTTAGAAGCGCGCGATCGCTATTGGCAACTTTATCCCCCTAAAGGGTTAACTCGTTTAATTCCTAAAGGAATGCGAACCCCACCCCGTCCCATTGATGATATTGTTGCGATTGTGTTAATTGAACGATATTTAAACCAGTAATCAATAAACAACAAGTAGG # Right flank : ACTGTCCCCTGAAACTGGGATAGAGTAGGCATTTTGAAGCCACTTTTCGTGAACCTCATTTTTAGCCTCATTTCAGCCTTCATTATTGCAAGAGATTGGCAATAATTAACCTAACTCAACAATAAAAACTATTTAATTGTCGAGGTTCTGGCGTTTTTCGTGAATCCCCCCAGTTTTTGACTCCCGCTTCGATTCACGAAAACTATAGTAAACCAAATAGAACCTCTTGTCAAGATTAATTTTCTATGATATGGATTGTCCAAGGTATTGAAGTCTGCGTCAACAATAAACACTTTCTGAGATGCTTCATTTCACTCAACATAACAAAGACTTCAATTATTCTAGTTTAACTCTTAAATTTTATTTGCAAAATGTTCCTGTAATAAACGGTGAATAAAACGATAGCGATCGCCTATTTTATGTAACAATAATTTACGACTGCAATCTTTCAAAAACCGTTGATAATTCCAAGGAATATTCCCATCTTTCCACAAAACCCA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCGAACGGGATTCTATTAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 52244-53422 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSC010000006.1 Planktothrix sp. FACHB-1365 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 52244 36 94.4 44 ...A........G....................... ATAGCTGCTGCTGGGTTGTAGGTGGGTGCACCTTTTGCTGTTCT 52324 36 100.0 40 .................................... CTGACGGCAGGGAGAGTGGCCCAAGCCATAGTCATAGCTT 52400 36 100.0 41 .................................... CCGTATTGGAGGACGTAGCCCAGTTTGCAACCATGCTCCCA 52477 36 97.2 35 ...........C........................ GCCCATTGACCTGAACGACCTAATGCAAAGTTGCG 52548 36 94.4 41 ............G...............T....... TTGTCGCCGTCACCCGTTTATCGCGCTGCATGGATTTGCAC 52625 36 88.9 44 ...A...T....G.......A............... CTTTTAAAGTCAGGGGTTGGGAGTCCCTTAGCTTCAACTAGCAA 52705 36 97.2 42 ...........C........................ GACGATGCGCTGATTTTGAGGTCAGGCATCCAAAATTGATCG 52783 36 94.4 43 .........C.......T.................. TCGATTTCAACATAGGTTAGTCCAATGTTTACTTCCAGAGATG 52862 36 100.0 37 .................................... GCAGTTTTCTCAGCCCAGGGGCCGACTGCAACAGCAA 52935 36 94.4 35 ...A.......C........................ TGAATTGCTTCAATGTATTTAGCTGGGTGTGCATC 53006 36 100.0 40 .................................... TTGACGGCTTTATATTCAACCCTAAAAGTCTGATGGGTTT 53082 36 100.0 44 .................................... TCCCAAGAACGCTCCCGCAGTTCCTCTTGGGCGAGATAAAAGCT 53162 36 97.2 39 .............G...................... TAAGTTTCTGGTAATTCCCCACCTGTGTCAGCAAACAAA 53237 36 100.0 37 .................................... AAAGCCGCAGCGATGAAGGGTGCTATGTCGAAATATT 53310 36 91.7 41 .A........TC........................ ATACAAGCCATAGCCGTCTTAGCCGCCCATGGCCCAACGGC 53387 36 97.2 0 ............G....................... | ========== ====== ====== ====== ==================================== ============================================ ================== 16 36 96.7 40 GTAGCGACTTCTATTAGGAAGAAAAGGTGTTGAAAC # Left flank : AATTAGTGGGAGATTTATTAAATTTAGCGAGTCGTTTGGGGGGAGTTGGCCCCGGTTGGCGACGTCCTCCCCATCGTTTAGAGCGTTTTGGTGGGTTTCGCGGAAGTGAATTTACGGTGACACAGTTGGCGTCGGACTCTGGGTTTACGAGTGATCCCGCTTCTTATTTAAAGCAACTTAGCCACAGTATTGATCAGCAGGTGCGTCAACTGGCGAAAGTTTGGGGGTTTCAACCGACTAAAACGCCGCAACCGGGACGCATTTGCAGTATTTGGCGGGGGGAAGCGGACGCCTGGGAAGGGTTGGTACATGGGGTGTGTAGCACTAAGGCGGCTAACCGTCCGGTTTGGTGCGGGAGTTCTAATAACCGACCTTCGGGGTATGGGGTGCGGGAACATTCGGATTTTTGTTTGGTGACGGTTTTTGATCCGAATGTGGAGAAAAGTTTACCGAACTTGGAGTTTAGAAAAATTTATGGTTAAGTGTTGAAAGCAGGGTAA # Right flank : CTGTGCATCTACTTGCTTCGTGAACTGTGCTGCATAAACTAGAAAGTAGCGACTTTTGTTAAAGTCAAAGCATAAAAAAAGAGGCAATAGTTACTCAACTTTGCCTCTTAATTATTTTAATTAAACCTAAATTAAACAAGCGATTTAGATTCCTTCGCGTCCTTAATTCGCATTGTCCAGAATTGAATCGTATCAGAAATTTCGATTAACAAATCCGTTAATAAAACCTGCTGATTAAAATTCAAACTTCTGAACCGTTCTTGAAATTGTTCTGTCGTCATATCCGCCTTAATATTCAGATGAGATCCGACAATATTACACAACACCACTCGCGCCACACCCCAGGCAAAATAACGGCGTTGTTCGTCTGAACCCCCCGCAGCATTGGGAACACCCCCTCCTAATAACACCGAAGAACGAGACATGGCCCAAAACCGTTCCACGCCCCAACTTGCCACATAGTCACTAATTCCACTGGCGGCGCCTTGCCAGTCTCCCAG # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGACTTCTATTAGGAAGAAAAGGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 203970-205050 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSC010000006.1 Planktothrix sp. FACHB-1365 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 203970 37 100.0 36 ..................................... TCTTGCGGCTTCTGCTATTGCATCAAGTGCTTTTGC 204043 37 100.0 35 ..................................... AATGGACAGACCAATAACAACCTTAACGCTACTAT 204115 37 100.0 36 ..................................... TGCCTATCAAGAGTATCTTCTGCCTTTTTAACTCAA 204188 37 100.0 36 ..................................... TGCTGGCGGTGTGGTTCCAGGGGTAAATTATCTCCT 204261 37 100.0 36 ..................................... CAATTGTCGCTGTCGCTGTATTATTCTTATTCGCTG 204334 37 100.0 42 ..................................... CATGATCAGTTAGTTGAGATGTCCCCAAATATTAAGGGGGAA 204413 37 100.0 35 ..................................... TACTGAAAAACGCCGATATAAAATCTTTAAAAGAT 204485 37 100.0 37 ..................................... TATTGCTGTACTGACGCATTTGTTTTCGACGATACAA 204559 37 100.0 36 ..................................... CCTATTGGATTGATTGCCACAATTACCCAAAAAAAT 204632 37 100.0 41 ..................................... TGTCCATCTCTGTTTTTGAAGGAATAAGTTTGGGTTTGAAC 204710 37 100.0 38 ..................................... TCACAACCTAATCCTAGATTTAATCCTTAGCTATGGAT 204785 37 100.0 39 ..................................... TTCCTAGAATTTCAACCGCTCTATCGTTGGTACTGGATT 204861 37 100.0 43 ..................................... CTTTTAGTGGGGTTCAACTTAATCCTGATATTCGTCTTTACAG 204941 37 100.0 36 ..................................... AATTTCTCCAATTTTTGTCCGATTCGGACAAATTTC 205014 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 15 37 100.0 38 GTTTCAGTCCCGCGAACGGGATTCTATTAGTAGAAAG # Left flank : GGTTGATTTTCCTTTAGAATGTCCTTACACCCTTGAGCAATTATTGAATATTGAATGGTTTTCTGTTTAATTTTTATTTGCAAAATTTTCCTGTAACAAACAACAATTTTGATATAATATGAAATCCCATTATGAACGCTACAGATGATCCCCCCCAACCACCCTTAAAAAGCGAGATGTGTAGCAAACATTTAAGGATAGAATATAAAATAGTAGATTGTTTTCAGTCCCGCAAGCGGAATTCTATTAGTTGAAAGTTTCTATGTAGTAAGCCCTTCAGGGCTTTGGTTTAGTGGTTTAAGTCCCGCATATTAGTTGAAAGCTTCTATGTATGTAGTAAGCCCTTCAGGGCTTTGGTTTAGCGGTTTAAGTCCCGCATATTAGTTGAAAGCTTCTATGTATGTAGTAAGCCCTTCAGGGCTTTGGTTTAGCGGTTTAAGTCCCGCATATTAGTTGAAAGCTTCTAAAAACTAAATTACGACCTTGCGGGATTAATTTAT # Right flank : GACTGCCCCCTGAAACTGGGACAGAGTAGGCATTCTGAAGCCACTTTTCGTGAACCTCATTTTTAGCCTCATTTCAGCCTTCATTATTGCAAGAGATTAGCAATAATTTAACTAACTCAACAATAAAAACTATTTAATTGTCGAGGTTCTAGGGTTTTTCGTGAATCCCCCCAGGTTTTTGCTCCCGCTTCGATTCCCGAAAACCATGACATTAATCCTAAGCCCCCCTGCCCCAATAAGCAAGTTAACGTTTAAATTCTTTACAATTTCATTCCCTGTTTCCTATTCCCTTTCCTCATAATCTTGAATATCAGGGTGAGTCAAACCTAGAAAACCCACCCCTACTGTTCAACTTAAAGCATCAATTAACGCTTCAACTCGGACTTTAATTTCATCTCTAACTCGATGAAAAGTTTCTAACGGTTGTCCATCGGGATCATCTAATTGCCAATCTTCAAAAACTTCTCGAATTACCCAATCTTCCGGTAAATTTACACCAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCGAACGGGATTCTATTAGTAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 173265-175974 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSC010000008.1 Planktothrix sp. FACHB-1365 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 173265 36 100.0 38 .................................... TTCAATGATCTCTGTTGTCTTGAAGAAGTCTATACTAG 173339 36 100.0 39 .................................... TGCACTAGAGAACACAGCGCCATCAGGGTACATACGTAC 173414 36 100.0 34 .................................... CTTGAGGTACCTAATTTAGTTAAGAGTGTATATA 173484 36 100.0 47 .................................... ACAATCCCTCCTTATGAGATAGCAATTATAGGGAGGGAGATTAAGGA 173567 36 100.0 35 .................................... ACAGGAGGTAATAACTTCACTGCAATTGAAGTTAT 173638 36 100.0 39 .................................... GAAGGATAATGCGATTCAATAGATAGATATAAGAGAGGT 173713 36 100.0 31 .................................... GGTAATATCAAATGACTATTCTTCTTACTTA 173780 36 100.0 35 .................................... ATCAAGAATCTGGCAGTCGGCTGCCTTTACGTGGT 173851 36 100.0 35 .................................... TTGTAGCGAGTTATATACATCAATAGCTTCTTGGA 173922 36 100.0 34 .................................... TAGGGTAAATCTGACATATCAATTCTCCTATACT 173992 36 100.0 37 .................................... GAGGTCATTGCCATCGAACTTACCGAACTCCAAGTAG 174065 36 100.0 39 .................................... TCGTATTCATCGTAAAGGTCTTCTGGTTCCCACCGCTCC 174140 36 100.0 38 .................................... GGTGAACTGCTTGACTCCAAAGTGGGTGAAACCTTCAA 174214 36 100.0 36 .................................... TAGGAACTTATGTAGTTCGGCTGTGTAAGTCTTTAG 174286 36 100.0 43 .................................... AACCACTCAAGAATGGTTTCACTTGCACCAAGAGGCATCGTGA 174365 36 100.0 35 .................................... TCTCCCATTCAATGGGAAGACTTAGATATTTCCAC 174436 36 100.0 40 .................................... TTAACTATCCCTTTATATTGTTAGGTCATTTCACATTCCC 174512 36 100.0 41 .................................... TGGCACTCTTCTACATGACCTCCAATCTGAATCTGTTTCCA 174589 36 100.0 34 .................................... CTTGTTCAGTAATACCTTTAGTAGATGTTAAGTA 174659 36 100.0 41 .................................... CGGAGTTGTTGTCCTCAGTTAATTATTGAAAATGATCAACA 174736 36 100.0 42 .................................... GAGTGCCACAATTTCATCGTGGCTGATTTCTTGTGCATTAAT 174814 36 100.0 48 .................................... CTGAAATAGAGAGAGTTATCTCTCTAAGGAACTCATGTTCCATCTTGA 174898 36 100.0 42 .................................... CAGGACGAGCGAGAAGTTCAGCTGCACGTTTTTGTTGCCCTT 174976 36 100.0 35 .................................... TGTGTAGGGATAACTAACTCCCTGAAGGATTGCCC 175047 36 100.0 34 .................................... AAAAGAGAGAAGGTTAGATTGGAACCCACCCCAA 175117 36 100.0 45 .................................... TCTTAAAGACAATTTGATTGTTGAGAGACTCACATTCGTCTGGGT 175198 36 100.0 45 .................................... ACTGCAGAAGCTGTACCTAACCACCACTCTAAGGTGGCATCATAT 175279 36 100.0 36 .................................... TAGAAGTAGAGGGAAGAGGTGAAGAGTAGAAATAGT 175351 36 100.0 36 .................................... CAGTGAGTAGTCGGTAACAAGACATTAAGTTCTCAA 175423 36 100.0 37 .................................... AAGCATGATGGCCAAAGGCTTAAGCCTTAAAGCTGTA 175496 36 100.0 36 .................................... TTATAGCACCATAATGGTGAGTTGATCCTGGCATAG 175568 36 100.0 35 .................................... AAGGAGAAGAGATGTTTATTAGCACCACCACGACC 175639 36 100.0 40 .................................... ACTTCTTCTTCTGTTTGAAAGTACCAATTCCAGTCAACAT 175715 36 100.0 37 .................................... ACCTCCCACTTGACCACTTCTGAGTGGCAAAGCAGGA 175788 36 100.0 36 .................................... AACGGATTCACATTACAAGTGTTGATTATTTTCATT 175860 36 100.0 43 .................................... AGGGGATCTGACAGGTTTTTATAATGAATTTGTAACTCATTGA 175939 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 37 36 100.0 38 CTCCCCACTCGCTGGGGAAATTAATTGATTGGAAAC # Left flank : GGTGTTTGAGTGTGTTCTACCTGAATCAAAATATCTTGAGTTACAGAAACGCTTGAAAAAACAGGTGAATTTGGCGGAAGATAATCTGCGGTTTTATCCTCTTTCTCGCCATACTTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAAAGATTACTGAGTATCCGAGTTCGTTGATTGTTTAAAGAGGTTGGGGAGGCTTAGGAAAGTTTGATGAGCCTCGCCAGCTTTCTGGGTAAGGGTTTCGTTTTTTTGCCCGGACATGAAACCAGGGGTTTGGATGGGGAAGTTTAGGAGGGATCATCAACGAAATCATGGGCTTGCGAGGCTCAGGCAAAATGGCTGTAATACTGATTCTCTCATTGGGAGCCTCGATATTGCTCTGGGTAAGGATTCTGGCGATTTTGGCAGCAGGCAAAATCGGGTTTCAGCCAACGGTTTTCCTGAGCCTCGCAAATGCCTACTAGACAGCCGATGGTGTCTGGGTTTAAAATAGGGGGA # Right flank : CAGGTTTGGGAAGCGATCGCGATATTCCGACCACTTCCCAGATCTCTCTACTTGCTAGGGAAATTCTATAAAATCCTAGTTTAAATGCACAATATCTTATTGCAATTGCAGTTGTCGTTGAACTTTAACTAAAGTGCGATCGCCTCTAATTAATTGATATTCAGCCTTCCAATTTCCGGGGGTTAAAGGGGATTGAGGATTATTTTTTTTCCCCACATAACCAATCCAAGTTTTACTCGATTCATTCACAAAACTTTCATTATTAACAACTTTTATTCCCTGAGCATCATAAACATTAAAAATCATTTTATCTCCCGTTAATACCCCATAAACCTGTACCCAAAATAACAATGCTGGACTATCTTGGGGTAAAATAGTTTCGTTAAATTTACCCTGCCATAATTCATCCATTGTCGGGGGTTGGGTTGAAAATCCAGCCCGAATTAACCCCGTTGGAATATAGGCTAAGGATTGTTCCCAAATGGGGTTACGAGTCACAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //