Array 1 3207-3683 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYMN01000038.1 Serratia sp. H1n Contig38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================== ================== 3207 28 100.0 32 ............................ TATCACTTTAAAAGCGACCTGGCCAGACTGCT 3267 28 100.0 32 ............................ AGTAGCAATCAGAATGCGCGGTTGATAGCCGG 3327 28 89.3 32 ..G.........AT.............. AATCTGGACCCTGCTGTAGTGTTTGGGGCATT 3387 28 82.1 32 ...A....T...ATC............. GGTCTAGCTTTCTCAGGGGTAAACCGGCTAGA 3447 28 96.4 32 ............A............... GTCGAGCTGCGGGAGGGCCGGGTATGAGCGGA 3507 27 92.9 122 ......................C.-... GCCGAGGGGGGTATAGATAACCCATTGATCATCCTGACGGGCGCAGCATGCAGCGCCCCTACGTTTGAGTCTGGTGGTTTTTTATATGGTTTCGTAATTCAAATCCTTTGGTTTCTACCAAT 3656 28 67.9 0 .C...TA..AA.A.C......AC..... | ========== ====== ====== ====== ============================ ========================================================================================================================== ================== 7 28 89.8 47 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : CAGAGCTTACCGCATTTGAGACCTTACCATGGCGTAAAGGGCTGCGGGATTACACAGAATGCAGCGAGATTCAGCCAGTACCCTCTCATGTGAAATATCGTACTGTGCGGCGTGTGCAGTTTAAAAGCAGTGCTGAGAGATTACGCCGTCGCTCTGTTAGCAAGGGTTGGCTCACAGAGGAGGAGGCCAGAATGCGTATTCCTGATTCTGTTGAGGAACGTTCGGCGCTGCCATTTATCCGTTTGAAAAGCCTATCCAGCGCGCAGACCTTTTTGTTGTTTATCGAACAGGGCAAGATTTGCGATAACGCGACAGAGGGGGTATTTAGTGCTTATGGCCTAAGTGCAACGGCAACCATCCCGTGGTTTTAACCCTAATTTAGTGGCTGATTCTAACCTATTGATTTTAAAGGTTGGGATCAGTATTCTTTAGAAAAGGGTTTTTGAGTGGGATGGCCGGATTCTATTTTATTAATAGTAGGTTGCTGTTGGTTTGTAACA # Right flank : ATCAACTTCAAATGTTTCCGCGAGGGCCTCTTCTGTTACATTCAACGAACAACGCCAAAAGGGAATTTAGACATGAAAAAACTCACCTCTGTGTGTCTGGGCTGCCTGCTGTTTGTCTCTGCCTGTAGCCCCCATAAAAGCACCCGCACCCAGCCTATCGAGCTACAGCCACAAGAAATGGCACCATTTGTAGATAAAACAACCTATTACCTTCGTGCAATTCAGACCGCCATCCAGCGAAAGTTTTTTATTGGAGATAACTATCGGGGTAAGACTTGCGATGTTACGATCAAGATGTCCAAAGATGGGCTGATATATGACGCGCAAGGCAGCGGTTACCCGCCGCTATGTGAAGCTGCGCTGAAAGCCATCAAAAATGCTGACATACCCGCGCCTCCTGACGATGAAACCTACCAAAGAATCAAAAAAACAATCATTACCTTCCAACCGGATTGAGTGTCAGATACCAAGAGTTGTTGGGCTGATGGGAGTAAAGAGGA # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:-1.47, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7249-5421 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYMN01000058.1 Serratia sp. H1n Contig58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7248 28 100.0 32 ............................ CGTGCCCAAAGGACCGGCGGAGCACATTGGTA 7188 28 100.0 32 ............................ TGCCATATCAAAGCAATCAGCTAGGGTAGGGA 7128 28 100.0 32 ............................ AGGGATGCGGCGAGGCTTCTCTAAGAAGTTTT 7068 28 100.0 32 ............................ ATGAAATCCCTACATTTCATTCACTCGGGTGT 7008 28 100.0 32 ............................ TGAACGCCATCGGCGTACGGGATAACGATTTC 6948 28 100.0 32 ............................ TTACCTCTCGTTGATACTCTCAACGCAGTAAA 6888 28 100.0 32 ............................ CTGAAAGTTGCCGGTAAAGAAATCAAGTTTTC 6828 28 100.0 32 ............................ TCATTCACAGCGCTGGCGATGCCGTCGACGGC 6768 28 100.0 32 ............................ TTATCCACCCGTTCCCACGTGCTGGCCATCTT 6708 28 100.0 32 ............................ CGCTGAAAATGGCGCACAACGTCTGTTTGTTC 6648 28 100.0 32 ............................ GTTTGCATTTTTCGGCCTCCATTGTGCTACTT 6588 28 100.0 32 ............................ GTGGAAGCGCGTGGAGTAGAGAAGTTCGCGGC 6528 28 100.0 32 ............................ GTAAGGCCGGTTACACCTGCCAGGGAAACACG 6468 28 100.0 32 ............................ TGAATGGGTGATCACCGTCGCCCGGAAGCTGA 6408 28 100.0 32 ............................ AGCAGTGCGGTTACGTACTCTTGCGAGTAAGT 6348 28 100.0 32 ............................ TTTATAATGTTTACGGAACGCCTCAAACAACC 6288 28 100.0 32 ............................ ATAGGGCAGCAGCTAGACCGTATAGCGTTGTT 6228 28 100.0 32 ............................ TGTTTCTGTTTGAGTTGGTTGTATTCGCAATC 6168 28 100.0 32 ............................ CATTTCACGATCTAACTTCCATTTCCTGCCAC 6108 28 100.0 32 ............................ CTACTCCCGCAAAACATGGTGGTGAAGCGCCT 6048 28 100.0 32 ............................ GAAGGCAGTGGAGTGTCGCTATCCCATGCATC 5988 28 100.0 32 ............................ TCTAATGGAACGCTGGCCGTAACGCCAACTAA 5928 28 100.0 32 ............................ CGTAATAAGTGGCGAATTGTTTCGCTATCTTG 5868 28 100.0 32 ............................ TGGTGAACATCACCATGCTGATGGCTTGGTTC 5808 28 100.0 32 ............................ TGTATGACGTTGAAACTGGCGAAGTGATTGAG 5748 28 100.0 32 ............................ AACTGGTTCAGCACTGCGGCCAGGGCAAACGC 5688 28 100.0 32 ............................ TTCCGGCGCAGCAGCCGAGATTCCTCAATAAG 5628 28 92.9 32 ..T.....T................... TATGGGGTTTGCATTGCCCAACGGCGCCACAG 5568 28 96.4 32 ..T......................... AAAGGCTATCAGGACGGCCTTAATTTAATTCC 5508 28 92.9 32 ..T......T.................. GCATGTGATTACATTTATACCGCCGGGATGGA 5448 28 85.7 0 ..T..........TC............G | ========== ====== ====== ====== ============================ ================================ ================== 31 28 99.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGATGGTAACAACATCCTTCCTTTTACGGTTTACCTCCAGGGCGATGGTGTACCGGGAAATATTAAAGCAGGCGACTATCAAGCTGCGGCAGGCTTCATGCTGAATTTCCAATAAGCTATTAATTCTCATGTGAATATCGGGAGCCTGATGGCTCCCTTTCTTTGTTTACCCAACGAAGCTAACCAACCCCATCGAATTGAAGGAAATTTAGGGTACCGGAAGGACGCAGCGCAAGTGAAAAAATAAAGCAGTCTCGATACTGTTGTAACTAGCTAGCCAGTAGTACCTTTATGGCAACTAAAAAGTCTAGAAAGAAATTGAGCAACGCCATAAGACCCGTGATGCAGACTCTTTCCTAATCTGGTTGAACCCTAATTTTAGTAGTGTAGATAACTTATTGATTTTGTTAGTGAGAATGTTAGTCCATTAAAAAAGGGTTTTCTGGCTAATATGAGGATTATTGTTTAATTAACAGATGATTGGGGATAGGATAGAACA # Right flank : AGGTGGCACCTATCTGGCGCGATTTCAGCCAGGGCCACTGCCGTACCGTCAACTTTCCCATCCTAGCCCTATCTTTATCATTAAGGTAATTTATATAAATCATTCATGGTTTTTATCTATATAAATGATTCATAGTCAATAAAAATTAAATAAAAACATAACATTCATCACTCTATCTAATAAGTAAAGTGTGCTAAAACATCACTATCGCGTGGACATCTGGCATAGAGCGTCTAGAGCCAGGTGGCTTATGGCATAAAAACAGGGATGTTTTCATCAATGCAAAATCAATTCTCGCCTTCCGAACTCAAAACTATTCTGCATTCAAAGCGGGCAAACCTCTATTACCTGCAACATTGCCGGATCCTGGTCAATGGAGGAAGGGTTGAGTATGTCACAGATGAAGGTAAGCAATCTTTATACTGGAACATCCCAATAGCCAATACTACTGCGGTGATGCTGGGGACGGGAACTTCCGTTACCCAAGCGGCAATGCGCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //