Array 1 319953-319618 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLI01000002.1 Salmonella enterica subsp. salamae serovar 58:d:z6 strain 327-85 NODE_2_length_564080_cov_1.87651, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 319952 29 100.0 32 ............................. CGGGGAGCGCGGGTTGTAGTAAACAAAATTTG 319891 29 100.0 32 ............................. TCCGCTCACTCACCGTTAGTGTTTCTGGCTCC 319830 29 100.0 33 ............................. TGTAATAGGCTCTATTAGTTCACCAGCTTGGAC 319768 29 100.0 32 ............................. CTTCAGGAAATCATCAGCAAAGCAATGACCTC 319707 29 100.0 32 ............................. ATGGCGATAATCAGGATAAACAATCCCCCTTT 319646 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : CCTGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGATTGTACGTGCGCGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGCTCATCCCGTATCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTTGCCGACGATATGCGCAAGATCTTACTCCCTCTTGATGTGATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATATGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTA # Right flank : GGATGGGCTGTAACACAAAGCAATATTAAGAAGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCTGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATAGTGAAGGCATGCCTCAGGATTATCATCAGCTTCTCATCCTTCCCCGTACGGAGAAATATGAGGCAGTATGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCTGTATGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 99831-97972 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLI01000012.1 Salmonella enterica subsp. salamae serovar 58:d:z6 strain 327-85 NODE_12_length_146807_cov_2.01097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99830 29 96.6 32 ............................A ACAATATTACTCAGGTTGACACCCTGGAGGGA 99769 29 100.0 32 ............................. TTCGTCCCAAAATATCCAAATATCTGGTGGTG 99708 29 100.0 32 ............................. GTTTTTTTCTATTTGTAGGTATTTTTTATCAG 99647 29 100.0 32 ............................. CCCCCATGAGCCTTGGTGAGGTCCGCCCTTGA 99586 29 100.0 32 ............................. CCCGATAGTGAGTCCTGGTCGTTGTTTGATCC 99525 29 100.0 32 ............................. CAAAAACTCAACAAATGACCCGCTACACGGAA 99464 29 100.0 32 ............................. AATAAAACCGCTTTGCACCTGCCCCTCAGTGA 99403 29 100.0 32 ............................. CCATTGAAAGGACAAAGCTGAACTGGCTGTTA 99342 29 100.0 32 ............................. AACTATTCCCGAATTACAGAAAACGACGCCAG 99281 29 100.0 32 ............................. CGCTTTTTTATGGTTATGCGACGTGATGGGCT 99220 29 100.0 32 ............................. AAATACTGGCCGTCGTAACACGTCTCGGCGAA 99159 29 100.0 32 ............................. GCGCTCCAGAGATGGATATGACTTTCCGCTAA 99098 29 100.0 31 ............................. CAACGCAGTACCAACGAGATAGCCGACCGGC 99038 29 100.0 32 ............................. GACGCACACTAATGAAATCACCTAAAAAACCC 98977 29 100.0 32 ............................. TTGCCCGCTGGATGTAGTGCAACTCCAGCAGC 98916 29 100.0 32 ............................. CGCTGCAACAGGGGCACAGTGAGTGGCAGGAA 98855 29 100.0 32 ............................. TAACGCTGTTCTGCATACGCTCTACCGCGCAC 98794 29 100.0 32 ............................. CGTTTATGGCCGTTGTCAGAGCTGCAGAACGT 98733 29 100.0 32 ............................. GGTATGGTGAAAATGATACACGTTCTGAAAAT 98672 29 100.0 32 ............................. CCAGTCAGCACCTGACCAGTGGCTGTGATGCG 98611 29 96.6 32 ..T.......................... GGGCAGTTCAACAAACACCACGACGCGGGAAT A [98607] 98549 29 100.0 32 ............................. CGGCGCAGACGCTGTTCCAGCCCGCGACCACA 98488 29 100.0 32 ............................. CGAGAACTGTAGAGCTCGCGTTTTCGTCGGAG 98427 29 100.0 32 ............................. CACTAGGAGTAACGGAAATGGTATGGCGGTAC 98366 29 100.0 32 ............................. GCTCCGGCCACAGGGATCGGTTCTCCGCATTT 98305 29 100.0 32 ............................. CCGATCTCGACTGTGCAGCCTGGATTTTTGAA 98244 29 100.0 32 ............................. TTCCACCGCCTTTATAACCTCGGTCATAATGC 98183 29 100.0 32 ............................. CGGCAGATTCGCACTGCGCCGGATGCCGTATT 98122 29 100.0 32 ............................. TGGCGCGCCAATCCGCCTTCGGTGCGTATCAC 98061 29 96.6 32 ............T................ AATACGCAAAGCTGATTTTGTCGAACAGTGCG 98000 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAGGATGTGCTCGCGGCAGGTGAAATTCAACCGCCGTTACCTCCAGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCTTTGGGGGATTCCGGTCATCGGAGTAACTGACGATGAGTATGCTAGTGGTGGTTACCGAAAATGTTCCTCCGCGCCTGCGAGGAAGGCTGGCCGTCTGGCTACTGGAAATTCGGGCTGGTGTGTATGTTGGTGATGTTTCAGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTGCCTGTTGCAAATCAATAAGTTAGAGATCTTTAAAAATAAGGAAAAGTTGGTGGATTTTTTGTATGCTAAAAACGGCTTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 119907-117132 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLI01000012.1 Salmonella enterica subsp. salamae serovar 58:d:z6 strain 327-85 NODE_12_length_146807_cov_2.01097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 119906 29 100.0 32 ............................. CTATGAACTTGAGAATTATACCGGTTGCGGCA 119845 29 100.0 32 ............................. GATACATCATCGCGCACTTCGAAGGGCCGGAT 119784 29 100.0 32 ............................. GCGGTCTGGATCATTCCGGCGACGCGTGGGTA 119723 29 100.0 32 ............................. AGGAGCTATTTTCTGTACTGATGGACCAGCGT 119662 29 100.0 32 ............................. GATTATAAACAGGGGTTTACTTTAGCGATAAA 119601 29 96.6 32 A............................ GCCACAGCAATGGCACCGGCCACTAACATTCC 119540 29 100.0 32 ............................. GATCGCTATTTCCTGCCCCCTCGGTGGTCGAG 119479 29 100.0 32 ............................. CCAGTGCTCACTTGCTTCTACCCGTCCCGACC 119418 29 100.0 32 ............................. CCAGCAACATTCAACGCTGGGAACGCTTCGGG 119357 29 100.0 32 ............................. GCACTTAGTTAAGGCGATCTTAAATTTGCTGC 119296 29 96.6 32 ............................C GACGGTGGCTGAGTTAAAACAGGCCTGGAAAA 119235 29 100.0 34 ............................. TGTTCAAAGTCCGCTGCGGTCAGGTGGCTGACGT 119172 29 100.0 32 ............................. CCTTCTCCCGGTTAGCCTGGGTTTTGCTGCGT 119111 29 100.0 32 ............................. GGCGTTTTCAGGCTGAGTTCCTTGCGCCATTG 119050 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 118989 29 100.0 32 ............................. CGCTTCAGGCTGGCTTAATCATTACGGCTTGA 118928 29 100.0 32 ............................. CGGCAACAGCTTGCGGCAACAGACCTTGCTAT 118867 29 96.6 32 ............................T TACAGACCGTTCATTTGTTATAAATATGTTTC 118806 29 100.0 32 ............................. CCGGTTGCGCCATATACTGCGTATTTAGCGAA 118745 29 100.0 32 ............................. CTCTCGCCAGCGATTCACGCGGGGAGCTGTGC 118684 29 100.0 32 ............................. ACAACGAGCAGATCCCGCTGCCGTCCGAGGTA 118623 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 118562 29 100.0 32 ............................. GGCTTCTGTGATTTCTTTCATTTTGCTGTAAA 118501 29 100.0 32 ............................. CTGGTAGGGATCACGACAATATCGGCCATATC 118440 29 100.0 32 ............................. TTCACCGCTGCATCCGCAGTGACCACTGGCGC 118379 29 100.0 32 ............................. CTGTCTGGCATCTCTGCAATCAAGGAAGACTC 118318 29 100.0 32 ............................. AGGTAGCGGGCAATCCGGCCAGTTTTCTCGCC 118257 29 100.0 32 ............................. CTGGCCACGACAGCGCAGCAGATTACAGAGGC 118196 29 100.0 32 ............................. GGGAATGGCGAAAGCCCTTTATTTAAAGGGAC 118135 29 100.0 32 ............................. AAAGGGGAAAGCGGTGTGAGCGAACAAATCGA 118074 29 96.6 32 ............................A GCCGACGAACTCGTTGCGCTGAAGCAGTCTGC 118013 29 100.0 32 ............................. CAATTACAGAGAAGAGGTTAAAAAAATATGAG 117952 29 100.0 32 ............................. TGGGTCCGCCCTGAGACCGTGGGAACGGGGTC 117891 29 100.0 32 ............................. AGGATATTTCCCTCGGTGAACGTATTCAGAAA 117830 29 100.0 32 ............................. GAAAGTTGGTAGTAGCTAAATTGGATAGCGAG 117769 29 100.0 32 ............................. GCGGCGTAATGAAAGGCGGAATTAATATCGTT 117708 29 100.0 32 ............................. TTTTTATCACGATCAGACCTGAAAACAGCCGA 117647 29 100.0 32 ............................. TATTTTTTTAGACGTTACTCAAAGGGCATATG 117586 29 100.0 32 ............................. TTGTTCTTGATTTTCTTTTTTTTGTATAGGCT 117525 29 100.0 32 ............................. GTCGCTATTTCAATTGCACACCCGGAATTAGC 117464 29 100.0 32 ............................. AACGTGTCTGCGCCGTTCCTGGTGCAACTGGG 117403 29 100.0 32 ............................. TCGTCCTCAGTGGGTAGTGCGGAATCAGAGAC 117342 29 100.0 32 ............................. TCAGAATCAGTCGGTGTTGCCCTCGAACTCGC 117281 29 100.0 32 ............................. AATGATGATTTGGCAGTAAAAACAGCATTCAA 117220 29 96.6 32 ............T................ AATCCTCGTTGCGGGTTAATCAGCATGTCGTC 117159 28 86.2 0 ....C........C..........G-... | ========== ====== ====== ====== ============================= ================================== ================== 46 29 99.3 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTTTAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAATTAGTTTATAAACAATGATATACATTTAGA # Right flank : TAGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCGGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATGAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTAGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //