Array 1 876643-877529 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP035740.1 Staphylococcus pseudintermedius strain 53_88 chromosome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    876643	    36	 100.0	    29	....................................	TAGGTATCCAGTTATTATTCATTCCTGAC 	
    876708	    36	 100.0	    29	....................................	GGAATTAAAGACCAAACCTTTGAGTTTAT 	
    876773	    36	 100.0	    29	....................................	TCATTCCAATCTTTACAGTTTTCCCCTTC 	
    876838	    36	 100.0	    29	....................................	AATAAAATCAAGCGTAGACCTTTTGAATT 	
    876903	    36	 100.0	    30	....................................	GCCAAGACTTTAGTAGAGCAGGCAAACGAT	
    876969	    36	 100.0	    29	....................................	TAAATCATTAGACAATGCGTGTCGTGTTA 	
    877034	    36	 100.0	    29	....................................	TACAACGCTTTTGTATGGAGCAATACGGT 	
    877099	    36	 100.0	    29	....................................	GAATTTTGCAGTCCTAGTAAGCGATAGCG 	
    877164	    36	 100.0	    30	....................................	TGAGCCTTTATCATTTAGAACAGCTAGAGT	
    877230	    36	  94.4	    29	............................A.....G.	GGACAACAACAAGATATTGCTCAAGCCTA 	
    877295	    36	  97.2	    30	............................A.......	AATACACGTGCTGTTATGGTGAAAGGCTAT	
    877361	    36	  94.4	    30	...........T................A.......	CGAAAGTAAAGATAGTATGCAAGGTGCAAG	
    877427	    36	  97.2	    30	............................A.......	GTTATGATGTTTGGCGATATGGGTCGTCGT	
    877493	    35	  83.3	     0	T........T................-.CA.C....	|                             	TC [877525]
==========	======	======	======	====================================	==============================	==================
        14	    36	  97.6	    29	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG

# Questionable array : NO	 Score: 6.14
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-14] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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