Array 1 17-595 **** Predicted by CRISPRDetect 2.4 *** >NZ_VETT01000023.1 Escherichia coli strain KCJK8671 NODE_23_length_21419_cov_3.416541, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 78 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 139 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 200 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 261 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 322 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 384 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 445 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 506 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 567 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATATGTATGCTTAGTG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13-1139 **** Predicted by CRISPRDetect 2.4 *** >NZ_VETT01000605.1 Escherichia coli strain KCJK8671 NODE_605_length_1204_cov_1.703807, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 74 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 135 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 196 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 257 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 318 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 379 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 440 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 501 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 562 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 623 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 684 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 745 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 806 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 867 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 928 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 989 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1050 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1111 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //