Array 1 345-711 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWB010000053.1 Aggregatibacter actinomycetemcomitans strain IDH781 835, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 345 33 97.0 34 ................................T TACAAATTTCCAACCTATCCATTGATTGTAGGTT 412 33 97.0 33 ................................C GTACAGTAATGGAAACAATGCCACCCGTAGCAG 478 33 97.0 35 ................................T ATGGAAACTTTAGATATGAATAAAGCTGTTGAAAA 546 33 100.0 34 ................................. ATCAATGGTACAAATTATAAATTAGGAATAGGTG 613 33 100.0 33 ................................. CTACCGGCACCTGGAATTGGTTAGCCAATACCC 679 33 81.8 0 .......T.....CA.....C...T......T. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 95.5 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : TGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGAG # Right flank : AGGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGTTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAAGCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGGTTCGGACAGCGGCGGCGGTGCCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCATTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGTGTCACTC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 345-575 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWB010000052.1 Aggregatibacter actinomycetemcomitans strain IDH781 834, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 345 32 100.0 34 ................................ CGGAGTAATAGCAACTCAACGCGTCATTGACACT 411 32 100.0 34 ................................ TCTCCCATTTACAAAACATTATTATATTTAATTT 477 32 100.0 35 ................................ ATAGAAGTCAATTAATACACCAGACGGTCTAGGTA 544 32 84.4 0 .T.....T.........A..A....C...... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 96.1 35 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Left flank : TGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGGAAGTAATCTACTGATTTTTCTTGTTTTTTTATATAGGGAG # Right flank : TTACTTGGCATGCGTTTTTTATGGGTATTTAACCGATTAAAAATATGTGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAATGCTCTGTGCGACTTCGATACTCGCCAAGCTCACGATTTATTGCCCTGCACGATTTTATACAATCCTTTTTCAATATTATTCAACATATCGGTAATTCAAAAAAACACCTTAAAAATCAACCGCATTTTTTCTCTCATAAAACAAAAGCTGAACCTTTCCGAAGATCCAGCTTTTCTTTTATCTATTTATTACGCTAATTCAGCGCGTAATTTTTTCGTGACGTCAACCATTACTTTCAGTTGTTCTAGGGTTTCTTTCCAACCGCGGGTTTTTAAACCACAGTCAGGGTTGACCCATAGGCGTTCTTTCGGCACCACTTGTAACGCTTTGCGTAGCAAGTGTTCGATTTCCGCGGCGGTTGGTACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCGATGTCGTTCGGGTA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4932-718 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWB010000099.1 Aggregatibacter actinomycetemcomitans strain IDH781 894, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================== ================== 4931 28 100.0 32 ............................ ATTAACGCCATCAAACGATTTATAAAGCTTAA 4871 28 100.0 32 ............................ TTTATACGGGAAAAAATCATCACGCTGACAAT 4811 28 100.0 33 ............................ ATTAAAAAATCGCCTTGGTTCAAGTCTCAAATT 4750 28 100.0 32 ............................ TTGGGCGGTTTATGCTCCTTATTGACCGCCCC 4690 28 100.0 33 ............................ CAACAGCAACCCCTACTCAAGCACCGGTTTAAC 4629 28 100.0 32 ............................ TATAATGCTGTGCGAGAAATTGTAGAAACCGG 4569 28 100.0 32 ............................ ATCTAAACTACCTCCAAAATGTTCCTTACAAG 4509 28 100.0 32 ............................ ATGATGATAAAACTACACAAGCTCAAGGTTCA 4449 28 100.0 32 ............................ TATGGCTATTTTAAGAAATTTAGATATGTTTT 4389 28 100.0 32 ............................ AACAAACTGCACTGATAAGCAATTATTGGTTG 4329 28 100.0 32 ............................ TGCTCCACCATAAATCAAAGCTTTTATACCTT 4269 28 100.0 32 ............................ TACTCAAGCACCGGTTCAACAAGCAGTAGGTA 4209 28 100.0 32 ............................ TCCAAAGTACGGTATTGATGAAGAAATGCTTT 4149 28 100.0 32 ............................ TTTAATTGTGGCTATTGAAAATGGTTTACTAA 4089 28 100.0 82 ............................ AACCAAGACCAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAGATTATGAAGT 3979 28 100.0 33 ............................ CTATAAAACAAGCATAGAAGCTTTTAAAATAAA 3918 28 100.0 32 ............................ TTTGCCACCTTCACTGATGATTTTCCCTGTCA 3858 28 100.0 32 ............................ TAATGAAAATAGAAGTCATTTAGGAGCAAGCC 3798 28 100.0 32 ............................ TAACGCACAAAATAGTTAATCAAATTTGGGTA 3738 28 100.0 33 ............................ CATTGGTTGTTGCGTTGCAATACTATTAATTAG 3677 28 100.0 32 ............................ ATGATGACAAAACTACACAAGCTCAAGGTTCA 3617 28 100.0 32 ............................ AATAAATTGTTTGGTTTGTATTTAATTTAAAC 3557 28 100.0 32 ............................ CTCTGAACAGTTGTCAATTCTAAAATTATATG 3497 28 100.0 32 ............................ AATAATCCTCTCGGAAAGCAGTGTGTGCGGTA 3437 28 100.0 32 ............................ ATCTCAATTAGTGCAACGTCAAGGTGTAAAAG 3377 28 100.0 82 ............................ AACCAAGACCAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAGATTATGAAGT 3267 28 100.0 32 ............................ ATAATAAAAATTTTTTATGATGTTTTTTGTAT 3207 28 100.0 32 ............................ ATATCATCAACCGGCTTTAGAAGGTAAGAAAA 3147 28 100.0 32 ............................ AATCAAGACCAAAGACTTTCCGATTATGAAGT 3087 28 100.0 32 ............................ TTTTAGATTGAAATAGTGTTGCAATATTACTT 3027 28 100.0 32 ............................ TTATTGCAAACTGTACGCACCTGAAATGATGA 2967 28 100.0 32 ............................ TTGGCAATCGAAAACACTGTTACTATTAACAC 2907 28 100.0 32 ............................ ATGTTATAAATTCATTTAAGGAAATTTACATT 2847 28 100.0 32 ............................ TACAAAACAAGGTCGATTTTAACAACCCCTAA 2787 28 100.0 32 ............................ TATATCTTTTTGTTTTAATCCTGCTGAAAAAA 2727 28 100.0 32 ............................ TGACGGTAATTGTCCTTTAACAATAATATGCA 2667 28 100.0 32 ............................ AAAATCTAAATTTTATGGTTTCAGATAATCAT 2607 28 100.0 32 ............................ AATGTCACCTTTAATAAAAGATTCAATTACAG 2547 28 100.0 32 ............................ AAAATTAGTATCACTAAAGTTACTTACTTTAG 2487 28 100.0 32 ............................ TTTGGGTGTAGATATTTTGTTTTACGTCCCGT 2427 28 100.0 33 ............................ TAGACAGTCACCGGCACAAATATTAAAACAAAT 2366 28 100.0 32 ............................ TCTCTTCCATACAACCGGTAATTCATTTTCAT 2306 28 100.0 32 ............................ TAGAGTATTACGCAGCAAGATTAAATCAAGAT 2246 28 100.0 32 ............................ AAGAAAAGGATTTATAACAGTTATAGTATTTT 2186 28 100.0 32 ............................ ATAACTTCGCAAACTATGGCGGATTTCCGTTT 2126 28 100.0 32 ............................ TTGATATGTAACAGATTCAGCATTGATTATGC 2066 28 100.0 32 ............................ TTTACTCGGTCATCAAAACTGTTTGTGTCAAC 2006 28 100.0 32 ............................ TTTTTCGCCCTGATCGCCTTTTGCACCTGCAA 1946 28 100.0 32 ............................ ATGGCCCCTATGTCAATTGGCGGCATATAATT 1886 28 100.0 32 ............................ AAAATCTGAATAAGCAAAAAGATTTACATATT 1826 28 100.0 32 ............................ AAGGAAAATCCATTCACCTTCAATTAGACCTA 1766 28 100.0 32 ............................ TACAATGTTAGACTTTTTTATTTCTCTTGTAC 1706 28 100.0 32 ............................ AAAAACAAAATGCGATTGGTTTAATGATTTGG 1646 28 100.0 32 ............................ ACAATACAAACTTAAGCCCAATTTGCGATAAT 1586 28 100.0 32 ............................ TAAAGCCACGTAATAACTGCTGATTAGATAAT 1526 28 100.0 32 ............................ TTCAGCAAATTTAAAATCACTTGTAAAAAACC 1466 28 100.0 32 ............................ TACAGCTAATCCGTTCCCGACAGCACAACCGG 1406 28 100.0 32 ............................ TCTGAAATAGCCAATATTTGCACCACTAAAAG 1346 28 100.0 32 ............................ AGCCCCTGTAGGCAATGCTAATAAAGGATTGT 1286 28 100.0 32 ............................ ACGTAAAGGAATTAGTTGCTCAAAATGCTGAA 1226 28 100.0 32 ............................ ACATTGGGTTGGTTGGCGTTATATAACTACTG 1166 28 100.0 32 ............................ ATTATTAATAATGATTCAAAATGGGAAAAAGA 1106 28 100.0 32 ............................ TATTTTCCAATTTATCTAAATGTTTTTTATAG 1046 28 100.0 32 ............................ GATAACTCTTTGTCGATTAGATTTGATACGCA 986 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 925 28 100.0 32 ............................ AAATCAGAAAGATAAAAAATGTAAGTCCAAAG 865 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 805 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 745 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================================================== ================== 69 28 99.9 34 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : ATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGTAAAATACCATCAACAAGAGGATTTTATAATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGTCAAATTAATCAAAGAACGTGGTTATTCGGTTGCACAAGCCTGCCGAGAATGAGACATCGGCGAAACGGTATTGCGTCGCCGGATAAACCAGGTTGAAGCGGAGAATCAAGGTTATGTCTTACCCGGCAGCAAACCGATTTCACCCGAGCAATAACGTATTTACGAGTTGGAGAAACGCATCAAAGAATTGGAAGAAGACAAGCTCATTCTAAAAAAAGCTACCGCGATTTATCCCTCGAGAAGCAAAGTACCAAGCCATCACGACGTTAAAATCGCGTGGAATCAAACGACTTTGTGCGCTGTTTGAGGTGTCTGAAAGTGCGTATTATGCCCAATGTAAAGCGGTAAAAACGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //