Array 1 212939-214553 **** Predicted by CRISPRDetect 2.4 *** >NZ_QETV01000004.1 Escherichia coli strain E433 Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212939 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 213000 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 213061 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 213122 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 213183 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 213244 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 213305 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 213366 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 213427 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 213488 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 213549 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 213610 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 213671 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 213732 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 213793 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 213854 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 213915 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 213976 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 214037 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 214098 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 214159 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 214220 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 214281 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 214342 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 214403 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 214464 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 214525 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230055-230755 **** Predicted by CRISPRDetect 2.4 *** >NZ_QETV01000004.1 Escherichia coli strain E433 Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 230055 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 230116 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 230177 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 230238 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 230299 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 230360 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 230421 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 230482 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 230543 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 230605 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 230666 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 230727 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //