Array 1 483673-485836 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLU01000002.1 Salmonella enterica subsp. arizonae serovar 47:z4,z23:- strain CFSAN059896 CFSAN059896_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 483673 29 100.0 32 ............................. ATAACAGTACCGGCTTCGTTACTTTTGCCAGC 483734 29 100.0 32 ............................. CATTCGAGAGCAAAACCGCTGACTAAACCTGG 483795 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 483856 29 100.0 32 ............................. CTATGAGTTTCACCATTAACAGCTCTCAACTT 483917 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 483978 29 100.0 32 ............................. CTAAACTGACAGGTACCATCCTGAAGGCGTTG 484039 29 100.0 32 ............................. GAAATATTCAACTGTATAGCGACACTACAAAG 484100 29 100.0 32 ............................. ATTTTATCCCGGCTGGAGTGACACGCAGACGC 484161 29 100.0 32 ............................. TCCCCACGTTGTCCGTGGGCGACCATCGCGTC 484222 29 100.0 32 ............................. GCAAACACGCTCATAACTACGGCCAGAAATGC 484283 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 484344 29 100.0 32 ............................. GGTGTATATCTGGAGGGGACTTAAACGAATGG 484405 29 100.0 32 ............................. CCGAACTCAGATACCCCGCCACAATCCACCAG 484466 29 100.0 32 ............................. GTTGGTCTGCTGGTCATTGAATCGGTAAAGAG 484527 29 100.0 32 ............................. CCGGAACAGATGCGAGACTTCAATCCAGAATT 484588 29 100.0 33 ............................. ATGATTTTTTTGAGGTTGAGCATGGCTCACGGC 484650 29 100.0 32 ............................. TTGCTTATTAATGAATTTGCGGCGGTGTTAAT 484711 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 484772 29 100.0 32 ............................. CTGGTTTCAACCTTGCTGGCAGCAATAGCCAG 484833 29 100.0 32 ............................. CGGTTATTTGACAATTGGTACTGGCATTAAAT 484894 29 100.0 32 ............................. ACTATCTCAAAACCGAAAACGACGGGATGGAA 484955 29 100.0 32 ............................. CCATTTTTGCCGCCATATGCAGCTCGACGACA 485016 29 100.0 32 ............................. CGAAAGCAGCACGCCGTGTGGGCGGTATCGCG 485077 29 100.0 32 ............................. ACGGACGCCGACTACCGCGCCGGCAATGTTGG 485138 29 100.0 32 ............................. GTCCTTGCCCCATTCACTACCTCAATTTTTAG 485199 29 100.0 32 ............................. ACGAGTCAGAGCATATTACCCCCGAACGCAAT 485260 29 100.0 32 ............................. GCGGGCGCGGGTCGCGCACGGTGCAGCCCGGT 485321 29 96.6 32 .........................A... TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 485382 29 96.6 32 .........................A... CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 485443 29 93.1 32 .............T...........A... CACTGGAGATATAGCTGCTGTCGTCATCGGGT 485504 29 93.1 32 .............T...........A... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 485565 29 93.1 32 .............T...........A... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 485626 29 93.1 32 .............T...........A... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 485687 29 93.1 32 .............T...........A... CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 485748 29 96.6 32 .........................A... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 485809 28 86.2 0 ...............A.AA....-..... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAGCCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTATGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 502476-505617 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLU01000002.1 Salmonella enterica subsp. arizonae serovar 47:z4,z23:- strain CFSAN059896 CFSAN059896_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 502476 29 100.0 32 ............................. TTTTCATACGCCTCGTAATTGTTTGCAGGGAT 502537 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGTTGGTTATTGGT 502598 29 100.0 32 ............................. AAAACACAGGTAGCGGTAAAGGGCCGCTGGGC 502659 29 100.0 32 ............................. ATGTGTCCGCAATTGAGCGTTTCTCGGCTGAT 502720 29 100.0 32 ............................. TTACCTGAAGATGTGAAGGTGAAAACAGCGGA 502781 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 502842 29 100.0 33 ............................. GTGCAAAACGCGTACCGGGCGTTTCAGGCGTTC 502904 29 100.0 32 ............................. TTTATGGAGGCGCTCGGCGGGCAGGTATCGCG 502965 29 100.0 32 ............................. ATATTGGTAATAACCCGGTAGTCATTCGTTTA 503026 29 100.0 32 ............................. TAATTACCAACGTCAGTTGACGCGAAACCTGA 503087 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 503148 29 100.0 32 ............................. CGAACGGTGCTGAAATTATTGAAAATGCGGTA 503209 29 100.0 32 ............................. AAATTGCATACATCTGGCGCAACCATCCGAGT 503270 29 100.0 32 ............................. GGGCGGGACGTTGCTACCGATACGACTCGCAA 503331 29 100.0 32 ............................. GACAGGCCGGGATCGGTGGGGTTATCGACGAG 503392 29 100.0 32 ............................. GCGTATGAAATCGACTACAGCAGGCGCAAACA 503453 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 503514 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 503575 29 100.0 32 ............................. ATATCGACGTTCAGGAGCCTGTCGCCGTTCTG 503636 29 100.0 32 ............................. CCGCCGCGCTTGCTAACAGCCTTTACCAGCGG 503697 29 100.0 32 ............................. CCCGCCCGCACAGGGAGGCGGTAACAGCTCAA 503758 29 100.0 32 ............................. AGATGGTAAAGGTGCTGGTCGCCGCGACTGCT 503819 29 96.6 32 ............................A CTCAGGCTGGCGCGGCGCACGTCTGCCGGAAC 503880 29 100.0 32 ............................. TCGCCCTGACTTTCTGTACCACCTTTAGAACC 503941 29 100.0 32 ............................. GTCTACGGCGTGCCTTGACTGGGCCGCCCGTA 504002 29 100.0 32 ............................. ACAAATAAAAATAACCTGATAGTGTATATCAC 504063 29 100.0 32 ............................. GATATTGCAGAACAAATCAAAAGTTTTGAGGC 504124 29 100.0 32 ............................. ATAACAGCAGCCACAATATAAATAATGGTTAA 504185 29 100.0 32 ............................. TCAGACAGTAAACCCCACGGCCTGACCGGGAG 504246 29 100.0 32 ............................. ACCGCCCGGCAGAACGGCGCAGGCGTATCGCG 504307 29 100.0 32 ............................. TGGTGAGATTTGCAAACTCCATCGAGCACCCC 504368 29 96.6 32 ............T................ CCGTTGTGTATCAAGATCCTGCGTGGCCTGGT 504429 29 100.0 32 ............................. AGAACGGCTCACGCGGTGCCACGTTTATCCCA 504490 29 100.0 32 ............................. TCCCCGAAAACCGTGGGCGCATATACCGACAT 504551 29 100.0 32 ............................. ACGGAAATCCGCGCGACCTACAACGGGCACAG 504612 29 100.0 32 ............................. CACATAGCGCGATCCGTTCCGAGAGTCTTTTT 504673 29 100.0 32 ............................. CGCTGAAAACGACAAAACAGGCGCCACAAAAA 504734 29 100.0 32 ............................. TCAGACAGTAAACCCCACGGCCTGACCGGGAG 504795 29 100.0 32 ............................. GCTGACAAAAATAGAGGAAGGTGAAATACCGA 504856 29 100.0 32 ............................. TTTTTTTCAGCGTCTTCTTTTTCTGGCATTCC 504917 29 100.0 32 ............................. TTTCCCGATTGGGCAATGAGCGCAATCACGCC 504978 29 96.6 32 .............T............... AGGGTGCAAAAATGGTTAAAACACTGTCCTAC 505039 29 96.6 32 .............T............... TGTCGCCGTCCTCGTAGACGGTCGAATAATCC 505100 29 96.6 32 .............T............... TTTCTGCATGGTCGCGGCGGTGACGTATTTAT 505161 29 96.6 32 .............T............... CGGCCGCCACTATGCTCAAGAATCGAAACCGC 505222 29 96.6 32 .............T............... ACAGCGTCACCATTATTGACCGCGATAACTGG 505283 29 96.6 32 .............T............... CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 505344 29 93.1 32 .G...........T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 505405 29 100.0 32 ............................. ATATTCAAACGGCGCGGGGGGAGACATCCGGA 505466 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 505527 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 505588 29 96.6 0 A............................ | A [505614] ========== ====== ====== ====== ============================= ================================= ================== 52 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //