Array 1 4218-5040 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASQP01000259.1 Streptomyces sparsogenes DSM 40356 contig00259, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4218 29 100.0 32 ............................. GAGAAATGCTTCAGTTCCTCGCAGGACTCCTC 4279 29 100.0 32 ............................. CGTCCACCGTACGCGCCGTCGTCCTCGATCGG 4340 29 100.0 33 ............................. CCCCCCACGCGGTGGTGCGTGGGGGGTTGCTGA 4402 29 100.0 32 ............................. CTGAACCACGCCGGGCTGCTGCCGCTCACGCT 4463 29 100.0 32 ............................. CCGCCGGACGGCGGCGGCCCGATCATGCAGGA 4524 29 100.0 32 ............................. GCGCCCAGCGGAACCTGACGCGCGACACAAGG 4585 29 100.0 32 ............................. GGTCCGCGCCGGCCGCCGACGCTGGCCCGCCC 4646 29 100.0 32 ............................. GTGGTCAGGGGACCGGGCCGGGCCGGAAGAAG 4707 29 100.0 32 ............................. CGCGCTTGGGCGATGGCCCAGGATTACCGCAG 4768 29 96.6 32 ........T.................... CAAGCACCACATTGCTGAGGCCCGGAAGCTGC 4829 29 96.6 32 ..........T.................. GAGGAGTCCACCACCGGCTACGTCGTGACGTC 4890 29 96.6 32 ..........T.................. AAATGATGACCGACCAGTGAGGGGCGCATCAT 4951 29 96.6 32 .....................G....... GGAATCAGCACTTCCTCGCCGGTCTCGGTGTC 5012 29 69.0 0 ..A...G...........C.CGGA.A..G | ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGGCCGCGAGGGCCCTGAGGAACAGAACCCGGCGTACAGGCCGACTCGTCCGCCCCACCTGCGACTTTCCATGTCCGGCCATCCCGGCGGCGATGAGAGGGACGGCAGCGACAAGGCCGGAAGGCCCCGTATCGGGCAGGTCGTGACGGCCCGACCGCCAGCCATCCAGAGGATCCTCAGGAGGAACCTGCTGACGGCCTCAGTCCAGACCTGGCACCATCGCCTGGCGACTTCACAACCGCCGCCGACGCCCGCGACACCGTAAGCGACCAGTATGGAGCCCAAGCAGAGCAGACGGCTGTTACGACCACCTTGATCACTCGGTGCATCAGTCTGGCTGTCGAGCGGCGGCATTTCGCGAGCAGTTACGGTTGAAGGCACCCCGGGTGGTCAGGAATTGCAAGGTGGCGGAAAGTTGTGCATCTATGCCCCTTGTGTCGGACTCTCTGAAAGTGTGCAAGGCGCAGGACGTGCGCCGGTAAACCCCCAGGTCGCTGAGT # Right flank : GGGGCGCCGCGTCTGGTGGTCCGCGAGCACGGCCGCACCTCACCGTCGGCTACATACCAAACCGCGCGTACACCCTGCTTGGTTTCGAAGAAATAGCTCGTCAAAGGGCCTTTATGCACTTGAATGGCGACGTGACGCAAGGGAGGGCGCAGATCGTAGGCGCAAGGCTGACGGCCACAGCCCGGACAGCATGGGCCAAACACGACAGAAAAACGGATGGATGGCTGCCGCTCTGGCGACACATGGCCGACAGCGCGGCCGTTGCCGGGATGCTGTGGGACCGGTGGGTGCCCCGGAATGTGCGGCGGTTAGTGGCCGATGTACTGCCAGCCGGCGAGGATGACGCCCGCCGCTTGGCGGTGTGGTTGGCGGCGGCCCATGACATCGGGAAGGCGACGCCCGCCTTCGCGTGCCAGGTGGACGGCCTCGCCGATCGTATGCGAGCCGCTGGGCTCGAGATGCCGCCGCAGAAGCAACTTGGGGACGATCGGCGGTTGGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14408-15046 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASQP01000259.1 Streptomyces sparsogenes DSM 40356 contig00259, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14408 29 100.0 32 ............................. GTCACGGCCGACACCGATCCGGCACGAGCGGA 14469 29 96.6 32 ............................T TCCCGAGACACGCAGGAAGTCGCCGGGCTGGA 14530 29 100.0 32 ............................. GCCGAATTGGCCCGCTGTCCCGATGTGCTGAT 14591 29 100.0 32 ............................. TGGGCGTTCGGGGACCTCGCGGGCTCGCAGTG 14652 29 100.0 32 ............................. ACGTGGGTCACGCCCTTCGCGTCCGTCACGTG 14713 29 100.0 32 ............................. GTCATCTGAACGTTCATGGCGTCGTCGGTCTG 14774 29 100.0 32 ............................. GGGGGTTCAGGGCAAGCCGAAGGGGAGCGCTC 14835 29 100.0 32 ............................. GACATCTTGGTCTCCAGCGTCAGATCAGGGCG 14896 29 100.0 33 ............................. ACGGAGGGGCCGGTGGGGATGGGCTCGCGAGCC 14958 28 89.7 32 ....-......GT................ ACGCGCCGCTTTGTCGGCTGATGGATCCACCT 15018 29 89.7 0 ...........T..T..........C... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : AACACTGCAGTCGGACCGCGGGCTGGACGTGGCAGCAGGCCGCAACTACGCCGAGGAAGTGATCTGGTGACCGTCATCGTCCTCACCCAATGCCCTGTCGGCCTGAGGGGCTTCCTCACTCGCTGGCTACTTGAGATATCTCCGGGCGTGTTCGTCGGCGGCCCCTCCACGCGCATCCGTGAAGCCCTCTGGCACGAGGTCAAGCAGTACGCCGGCAACGGCCGCGCACTGCTCGCTTACAACACGAACAACGAGCAGGGCTTCGCGTTCGAGACCCACGACCACAAATGGCACCCTGTGGACCACGAGGGCCTCACGCTCATCCGCCGCCCGAACGAACAGGTGGCTAAGCCAGCGGTCGTCCAGCGGGGGTGGAGTAAGGCGTCCAGGCGTCGGCGGTTTGGGAATCGATAAACAAGCGAATTATGGGAGTTATGTCGGGTTCGATGGTAGTGCTCTTCGGTTCGCCCTCGGCCCGACGAACATGCAGGTCACTGAGT # Right flank : CAGCAGAACTTCGCCGACGGTGGATGGCTAGGGCATTCCGACCCCGCCTTGACGCTTCGCACCTACACCCACTTCATGCCACAGGCCGCAGCGCGCGGCGCCCCACCTCCGATGGTTCACCGGGGCCTCATCCCGTCCGCCCCGCACCACGGGTCGGGCGGATCGAGAGCGCGTGGTGGAAGACGTCGCGCGGGTCCCAGCGGGTCTTGGCCGCGCGTAGGCGGGCGTGGTTGGACTTGTAGTAGAGGGTCTGCCAGGGGGTGCCCGAGGTGTTCCAGCGGGGGTCGGCGAGGTCGGTGTCCGGGTAGTTGATGAAGGCGCCGTCGGTGGTCTTGTTGGGGACCGGGACGCCGCCGGTGGCGGCGAAGAGGTCTCGGTAGCAGGCGCGGATCCAGGTGAGGTACTCGGCCGCCTGGTCGGGAGTGGACCAGGAGGCGAGGCAGGAGAGCTTCAGTACGGAGTCGCGGTGGGGCATGGCGGTGGCGGTGGGGGAGAGGGTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //