Array 1 4050-2773 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHD01000179.1 Nostoc linckia z8 scaffold225.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 4049 36 100.0 37 .................................... CTAATGAAGTTTGGTAAAGAAAGGGTTTCAACTAATT 3976 36 100.0 32 .................................... TTAAAGATTTTTAGTTCAACAATTATGCCAAA 3908 36 100.0 36 .................................... TTTATTGCGTTCCGGATTACCAATATTTTGGATGGA 3836 36 100.0 37 .................................... AGACTGAGTTGTGGTTGCCACAATCACCAGTAGGAAG 3763 36 100.0 37 .................................... ATATTCTTGTAATTGATTTTCAAGGATTAATGCACTA 3690 36 100.0 37 .................................... ATTAAGCCAAATGTTGCCTTAAGGTTTTCTTCAACCC 3617 36 100.0 39 .................................... TTCTTGATTCCCCCAGTAGAGAAGCGAGATTTCGTCCGG 3542 36 100.0 35 .................................... CTTGCTGGTTCCAAATCTGCGAGATTTGCCTTTAT 3471 36 100.0 37 .................................... ACGAGCAGTCCTGCGGTTGAACAGCATACAGCGTGTG 3398 36 100.0 36 .................................... GATTGATGTAAACATAAACATTAAACTCTTGAACAA 3326 36 100.0 40 .................................... AGCATTGAATGGTTGGTCGGGTTCCCATGAACCGCAACCG 3250 36 100.0 41 .................................... TTGCAGTAGTAGCAACTGCGCTGTTGGCGACTGCATTTAGC 3173 36 100.0 36 .................................... AATGTTATAAGCAATCCTCCAACATCACCTTGTATG 3101 36 97.2 37 ..........C......................... ATTATGGTTGCTTCAAAATCGTTTTCGCAGTCTCTGT 3028 36 97.2 37 ..........C......................... TCGCCTTTCATGAGAAAATGCAGAACGCGGTTTTTTA 2955 36 97.2 37 ..........C......................... TCGCCTTTCATGAGAAAATGCAGAATGCGGTTTTTTA 2882 36 97.2 38 ..........C......................... TCAAATTCTTCACTGGTAACTTGACACTCACCCATTGC 2808 36 83.3 0 T.........C..TAA...................T | ========== ====== ====== ====== ==================================== ========================================= ================== 18 36 98.5 37 CTTTACCGATTGCCCTAAATCGGAATTAATGGAAAC # Left flank : GACACCCATCCCACAATAAACAATGTTTTTAAGTAGATGGACATAAATAAATATAATATGTTCTGTCATTGCGTTCGCGTAGCGTCTCGTAGAGAGCGAAGCGAAGCAATCCCAGAGACTTTGCGATTGCTTCGCTTCGCTCGCAATGACATCTTAGATTTAATCATGACTATCTACTTAGTTGCGCCTTAGCACCTTCCAAACAATAAAGCTAATGCACAACTTTAGTCTAGACACGCCACTACCTTTTCTAATGAGGAAGATTTATCTCACGCAAAGGCGCATAGTCGCACAGAAGATGAGGAGTTTTAGATGTTCATCGACACCAGTCGGGAAATTGCCAAAACACTATATTTTTCGTTGAGTGGTGTCGATTCCTTGCTGCGTAACGATTTGAGGTATGTGTGTTGTTGAATTTCACACAACATATATAATGTTTTTTAGAGTGGTGTCGATTTGGCGGCTGAAAGCCTTACGGGGCAAAGGCTCCTGAACGAACT # Right flank : CTATCGAAAAGCCAGATCCCCGACTTCTAAGTCTGGGATCTTTTTTTTCACGAAGGATTTAATTGCTTATTGCATTAAAATCTGACGGATTAAAATACTCATCATCTCGCCAGAATTACCCATTGGTACTAATGGACTTTACTCGCCAACGTTAGCCCAGCCAATGACTTACAAATAATGAATTGTGCTGGTAAGTAGGTCAACTTAATTAAACATAAAACAATGGTAGGGTGCGTTATCGCAAAGCGTAACGCACCTCAATTGCTATAGTACAGTCTACAGAGGTGCGTTAGCCTACGGCATAAGACACCCTACATTTATTGACATCTACGTATGACGTTTTTTTAGGTTGAGCTACTTAACGGCTTTTACATAACCTATCAATGTATTGCCTAAACTAACGTAATTTTTCGTTAGCTAACCATTTAAACTACTTATCCTAACGTTGCAAAAAAGCAATAAACTGTTACAACATCAAACGATGTAGAATTTTTGTTGAA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCCCTAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATCGCCCTAAATCGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 68191-69878 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHD01000001.1 Nostoc linckia z8 scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 68191 37 100.0 34 ..................................... AATGACCCAGAGCTTCAGGCAATGCAACAACATT 68262 37 100.0 33 ..................................... AGATAATTTCTAATGACACAACTTAAGCCAGTT 68332 37 100.0 41 ..................................... TTGTGGGTAGGGATTAATCAAATCTTTGTAGCGATTGTAGG 68410 37 100.0 37 ..................................... ATGCCCCTCTGGGTTGCTTACATGACCTTTAGGCGCA 68484 37 100.0 33 ..................................... AAAAGGATAATGGCTAATGGAACCTTCCTTGCT 68554 37 100.0 34 ..................................... AGAGAATGCAGAGGACTTATACTTGATGAATCTG 68625 37 100.0 34 ..................................... CCATATTTATTATCCTTTTAATATAAATTATTAA 68696 37 100.0 36 ..................................... AATATTAACTTGCAAGGAGAGGACAATTTATCACAA 68769 37 100.0 35 ..................................... AAATCAGAAAAATTAATATACTCAAATCCCCAATC 68841 37 100.0 34 ..................................... AATATCAAATCTGCTGTATTAGCAATCTCTAAAT 68912 37 100.0 33 ..................................... ATCTGCTCTTACTTGAGAAACTGTTCCCGCTTC 68982 37 100.0 34 ..................................... AAGTACTGAGCGGTTCCCTGGCTACTACGATCGG 69053 37 100.0 35 ..................................... ACAGACCTTACAAGTGTACCTGTAACCCGTGGAAG 69125 37 100.0 34 ..................................... CTGGCTCAGGCTGCCACTTAATCACCACAAAAAT 69196 37 100.0 34 ..................................... TTGGAAGATGATATTAGAATCGTCGAGGGAGCGA 69267 37 100.0 33 ..................................... ACCTACCACCAGGAATGATTTGAGGGCATTGCC 69337 37 100.0 40 ..................................... CTTTGTAGAACAAATTGCGCTGTTCGACCCTGACATCAAA 69414 37 100.0 35 ..................................... ATCATGTTGAGCACCCTATCTAAGTGCAGCCAATT 69486 37 100.0 32 ..................................... ATCTTGTGTGGCATCTCCTTCCTCGGCCCCCA 69555 37 100.0 38 ..................................... CATAGGGTTTATGCGAGCGAGTGTTGCTAGCGCTTTGG 69630 37 100.0 33 ..................................... GGCTAACCAGAATTAAGCAGAAACCGACTACTA 69700 37 100.0 34 ..................................... ATAAAGCACGAGCATCGGATCGATACTTGGCACT 69771 37 100.0 34 ..................................... GATTTTAATACTTATCGCCAAAAATTTAAGGCGG 69842 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 24 37 100.0 35 ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : CCAATATGCCAGGAGCCGTACCTTGGACAGCAACTCAGGCACTCAATAACAGTACATTACCTTATGTTGTGCAGTTAGCGAACTTGGGAATTAAAGCATTAGAAGTAAACCCAGCTTTAGCTAAAGGTGTGAATGTGCAAAATCATAAATTAGTGCATCCTGCTGTGCAAGAGGTTTTTCCTGATTTAGTGAGTTAGAAGCTGTGCAAGTGTTGGGCGATCGCCTATGCTAATGGTGGCAATCTTCATCAATTAGACTAATTTCGTTACCAAATGCGCGGATGGGTAGCTGTAGAAAATCAAAGCCAGCAAAAAATGGCTGCATCTCAATGTGTACAAGGTTTTGACGACTATAGAACTTTTAAACCATCCGCGCACCTTACGGAGACTGAGTTTCAGCAATTTTGAATTGTTTGACTACCATTTCCTGTGTTATCATTCTGTACATCCGCGCAACTGCACCTTGAAAACCAAATACAGCAAGTCTTTTTAGTGCCGGCG # Right flank : CTCTGATTTTTGAGTTTGTACGAAATAAAAGCCTTGAAGTTACGCGGATTCTCAATGCAGAGGAAGATATAGCAAGCATTTGAGAACAAGAGGTCTATTGAATAGCGATCGCCATTATGATTGTATCGGTGGAGTACTGGCATTTGAGGTCATTTTTGCCTTATCGCCCTCAGACTTAGTACAATATTTCACCCATTCAGTGTATGGCGATCGCTTTCCTCTTTGGATATGCTTTAAGAAGTATTAAAACTAGGCTCCTATTTTTCGGTATCCGTATCTGAGCGATTGTAATTATTAAACTGACAAACTTGAGAAATTTAACAATGAAATCCTTTTCTATTCCCTTAATTGTTGTAATGAGCGCACTTGCTCTTCCCCAGAGTGCCTATGGTAACGAACAGAATGTCCCAAATGCAACAAGCGATGGCAATCAGGCTGAAGCTTTATTGACTCAACCCGCCTCCATTAATACTAAGTGGAGAAATTTTAGCGGACAGACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 64840-64424 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHD01000027.1 Nostoc linckia z8 scaffold27.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 64839 36 100.0 42 .................................... TTGTTCCATCTGAATGCTGATAGAACCTATATCTTGTAAGTT 64761 36 100.0 40 .................................... ATATTTGAAGGTAGAGATTTTGTTGGAAGTAAACATTTAC 64685 36 100.0 38 .................................... TTTTTAGTCGTTTCAGTTGTTAGTCGCTCTTGCTTCTT 64611 36 100.0 34 .................................... TTAGAAGCCGTTGAACGATACAAGGTAGATATAG 64541 36 100.0 46 .................................... AGGACTCATCTTGTCTAAAAAGCCAGTTCCATTTTTTACAACTACA 64459 36 94.4 0 .......G......A..................... | ========== ====== ====== ====== ==================================== ============================================== ================== 6 36 99.1 40 GCCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Left flank : TAGTTATGAGCAGTTTCAACTGGGATTGTTTATGATGAGTCAGCATATTATTGGTGTAGCTACAAAATGAACAAGTAAGTTTTTAATAATTATTTTTTGGTAATATAAAGTTAATTTTTCAATATTACATGGGGAAAAATCGAACCGCAAAGTACGCAAAGAGATAAGAGTTGAAGTAGGTAGCTATGATTAAACAAGTTGCAAGTGGCAAGTATAGTTTTGTAATGGGGATTTTAACGCCACAACAAAATTTGCTGGTTATAAAACTGGGGGACTTAAACCCCCAGAATTTGTTAAATCTCAGAAATTATTGTTTCTGTGCGGCGGGGTCGAGTCTATGGTGCAAATGCTGATTCTCTCGTTAACCCGGCCGATATCCTTCTACACAAGGGTTTCAGAGTTTTTCGCCTCTGCTTTTTCTCTGGAAACAGCCTTCGGTTTCTACCCCGTCGCAAATGGCGTCTGGACATTAGGTGGTGTCAGGGTTTAAATTAATAGGG # Right flank : CAGCAATCTTTGTTCCATACCAACATTACCCTGCAAGCCACCTGTGTGTACCAGCAGCAAACTTTTGCCTTTAGCAAAAAAACCCTGCTGTAATAAATCCATCACGCCATAAAACATTTTGGCAGTATATACATAATCAAGAGGTACATTGTGCGCCGAGCTAAATTCTTGGCTGAATCGTAGCAACTCCTGATTGACTTTTGCATAGCCGCCGAAGTGATAATCACACATTAATTCCCAACAAGCGGGAGAATTATATGGACTCGGTAAACCAGAGGCGAGGTAATTTGTCAAGAGATTTTCTATTTCTTTTCCTAGAAAATTGCCATTTTTCAACACCGGAAAAGCGATCGCTTTTTGTCTTTGATTTAAAGAAAGTGCAATTCCAGCCAGCGTTGTTGCAGTACCGCAGGCTAGGCAAATATAATCAAAGGCGTAGCCAGCGGTAGACATCCCTTGATTAATTATCTCTGTACAACCGCGCACGCCGTTTAAATTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 46073-47474 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHD01000034.1 Nostoc linckia z8 scaffold34.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 46073 37 100.0 36 ..................................... ATCGAAGTTGCTCAAGCTTACGTTTCTCAGACTGGT 46146 37 100.0 36 ..................................... GTTACCTCAAGAAGTTGTAGTACAAGCAATTAAGTT 46219 37 100.0 36 ..................................... TGAGTTCATAACTCTATCAAAAGACCAAATAAAACT 46292 37 100.0 34 ..................................... GTGATTCGTGAGATTCAAATTCTGCTAAATGGTG 46363 37 100.0 34 ..................................... TCTTCATCTATCTCGCATGGGTCTACAGCTAAGA 46434 37 100.0 35 ..................................... ATAGGAAAAGGTGAAAACCCAGCAACCGACAAGGA 46506 37 100.0 34 ..................................... TTAGATATTGACTATTACACTCAGAGTAGTTTAA 46577 37 100.0 38 ..................................... ACTGGTGTAGCAACTTTAGGAAGTGCCGCAGTGACCGG 46652 37 100.0 36 ..................................... CAAGAGAAAAGTATCGTGACGCCACTAGATTAACAA 46725 37 100.0 35 ..................................... GAAAACTTTGCAGAAGATGAACAGCTAGACTTTGC 46797 37 100.0 32 ..................................... GAATTCTAGGCATATTCCCAATCATCGCCAAT 46866 37 100.0 34 ..................................... AGAATCCATGCGATTGCTCGCGTCTTTCCCTTTG 46937 37 100.0 31 ..................................... TGGATGGTATGGAGTGCTACCAACTGTTAGA 47005 37 100.0 39 ..................................... TTCGAGAGTACGCAAGACACCTTACAGAAACTTGTTGTA 47081 37 100.0 35 ..................................... CAACTCAAATTAATCGGTGGTAAAGGATCTTCTGA 47153 37 100.0 35 ..................................... CCCAGTCAATAAAAATTCCAGATACAGGGTAGTCG 47225 37 100.0 33 ..................................... TATGAGGAGAATAGCGTTGAATATTTACAACAG 47295 37 100.0 34 ..................................... ATCATTTAGGCGTGATAACCCCATAAATGCCTGC 47366 37 97.3 35 ...........C......................... CTGATTTACTGCGAGTTAAGGCAACATAAAGCAGA 47438 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 20 37 99.9 35 GTTACAATTTTTCTTAATCCCTATTAGGGATTGAAAC # Left flank : CAATAAATATTCTGAATTGTTCGCTGCAAACTTTTGTATCGCTTTTCATGTAACTGCATACCCTCAGGTAAAGTTAGATCGGCGGCTATAAGTAGGCCGATGTAAATAATTATTGTTGGGATAAGGCAGTTCTTGCTGGGAGCAGGGAGCAGGGAGCAGGGGGAGAAAGAGTTTGAGCCTTATTTACTTTTCTTTGCATAGTTTGGTTTTATTTCACCGACTTACTTAGTCAAAAGTGAAAAGACCAGCAAACGCCACAAAATTTTTATCCAAATGCGCGGATGGGTAGGTGTAGAAAATCAACCTTTGACAAAAATCTCTGTGTTCCTCTCAGCACAAACCTTTCAGGCAAAAGTAAATCAAAATCACCCGCGCATCATGCCCAGACAGCATTTCAGCGATTTAGTGTCAATCAATTGAAATTTTCTAGTGATACAATTGACCCATCCGCGCAACTGAACCTTGAAAACCAAATACACATTAGCTCTAAGGCTTTGGCG # Right flank : CTTAAAATTATTAAGTCAACCATGAAAAATAAAGGCGTTGCTGATTGAAAGTATGAATTACTTTCACACATAGTCAATTAAAAATTATTTAAATAATTGTATATTCACCTTGGGCGAGAGCATCTAACTTCGCTCGGTCTAATACCAAAATTTTTCCGCCTCGATGATAGCGGACGCTCGAATGGATTTGCTTGAACAATCTTACACACTCTTCATAGGTAATTCCAATGCTACGAGCAATTTGATAATATGGTAAACGCGATCGCAACAATTCTCCCTGTTCAGTTACTTCCGTTCCTTCTGTAAGTGCTGAGAACTTCAGGTATTGCGCTAAACGCACAATTGCGCGTTCTGAAACTAATCCATGCACCGTTTGATGTAGATGCTGGAGACGCTCTGTCAAAACTGCAATAATCCGCAAAGCCACTTCTGGAGTATGGTGAATCAGTGCTAGTAAAGCAGTACGCTCCAGCATCAGAATTTTGCAGTTTTGCTGTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTTTCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 25004-23937 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHD01000047.1 Nostoc linckia z8 scaffold49.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 25003 36 100.0 37 .................................... GGCAATATCTTGCAACTGTTCTGGAGAAAAACTTTTC 24930 36 100.0 36 .................................... TAACGCATGGATCTTCCATTACCATTACAACTTCTT 24858 36 100.0 36 .................................... AATCTTTTGTCTCTCGATGGAGGGTGCTTGCAGATT 24786 36 100.0 40 .................................... TTGACACTAGAAGTTCCTCCTGCGCCGCCTTGACCATTAC 24710 36 100.0 37 .................................... GCTATAAAAACAGCATCGGAAGCGGGTATTCCAACTA 24637 36 100.0 34 .................................... TTTACAACAGAAAAAACACGGATTCTATGTAGAA 24567 36 100.0 38 .................................... AAGATTCTTTTTGCACGTTGTAAATGGCAGCAGGGATT 24493 36 100.0 39 .................................... TATTTGCAATACCCAGTCTTTTTTTGTTTTTGGCAAAAG 24418 36 100.0 41 .................................... TAAAGTTGATGGTTTTTGTCGTCCAGTGCTGTGACCTTCTC 24341 36 100.0 38 .................................... ACTTGTCCTTCCAACTTTGTGGAAAGACTTCTCGACTC 24267 36 100.0 37 .................................... CACCAAGCCAGTCAATCCTCAAAGTTCTTGAGGTTGC 24194 36 100.0 40 .................................... TCTTCCAACATGTTGTCGCCAATAATGGAAAAGCCGTTTT 24118 36 94.4 39 ..........C..C...................... CAAATCTCATTAGCCCAGTTCCCATTTTCGGAACGGGGT 24043 36 97.2 35 ..........C......................... AATTTCTTTGATTTTTGCTTTGAACTTCAAGTTTG 23972 35 88.9 0 ..........C..............C...-...T.. | T [23939] ========== ====== ====== ====== ==================================== ========================================= ================== 15 36 98.7 38 CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Left flank : GGAGCAAAGGTTATGGCTGTATATTTGGTCACGCTTGCTTTTGTCACTGGTTGCAGTCTTGTTTAAATTACTGTAGAAATTTGAGTTTTTATTCAGTGGTTATACTTTGTAATAATTCTCGATTTGGGTAATTAGGAGTTATGTAAGGGTGGGTGAGTTCTTGTGACTTTTATATCTTGGCGGAAATTTTGAGGATGTAAAGGCCTTTTCGTGCGAATGACGAAATTTTTTTTAGAGATGATTTATTTCACGCAGAGGCGCAGCACTTCGGCTACGCTCAGTGACCGGCGCGGAGAGGATGAGGAGTTTGAGATGTTCATCGACACCAGTCGCCAAATCGCTACAATCCTATATTTTTCGTTGAGTGGTGTCGATTCCTTACTGGATAATGATTTGAGGTATGTGTGTTGTTCAATTTCACACAACATATATAATGTTTTTTAGAGTGGTGTCGATTTGGCGGCTGAAAGCCTTACGGGGCAAAGGCTCCTGAACGAACT # Right flank : CAAAAATATCCAATCTTGTGGGGTGGGCGTCTCGCCCGCCCAGTCCATAGGGCGGACAAGATGTCCACCCCACAAGAAAAAATCCCCGACTTTTTAGAAAAGCCGGGAATTTTATTTTTCTCAATTGCTTATTGCATTAAAATCTGACGGATTAAAATACTCATTACTTCGTCAGCATTACCAGTTGGTACTAATGGACTCCAGTCGCCGACGCTAGCGTAGCCAATGATTTGCAGATGGTGAATTGTGCCGATAACTGCTTTTGAAGAACCCATCAATAAATGTTTAACCGGTTCTCTTTTGGGTAATGGATTTTGAGCCGGTTGATTTAAGACTGGTATATTTAAGTTCTCGCTATCCAAGTATTGTTGCAGTTCTGATTGATTTTCTACAAACTCTTCTTCTTGTGCCATGATGATAATTAACTCTCAGAATGGGGGTTTAGGGAAAGGCGATCGCAAGCTCTTGCCGGAGGGCGATCGCCTTTCTTATTTGCATAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 28471-27778 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHD01000051.1 Nostoc linckia z8 scaffold53.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 28470 36 97.2 38 ...............C.................... CTTTTGGTTGCTGCACTGTTTCCACAGTTATGTCTCTG 28396 36 97.2 37 ...............C.................... CCCTAGGCCGCAAGCGCCTAGTAATACCCTCAACCCG 28323 36 97.2 37 ...............C.................... ATTAGAGCTGAGTAGACCGCGTCAATATGACCGGCCA 28250 36 97.2 42 ...............C.................... TCAAGCATATCAAAATCTGAAACTAAGACTACTTTATGACGA 28172 36 100.0 34 .................................... AATTTTGCTACGAATTGACCGCATGTAAAATCTG 28102 36 100.0 35 .................................... GTTTTCTACTCCACTGGTCTCTTTTGTGTCCTTCC 28031 36 97.2 39 .............T...................... AATCAAGAACAAACTTTCCTTCCGCATTTTTCCCTAGAA 27956 36 100.0 34 .................................... TGAACTTCCTTCAAAGTCGGGTTTTCAACCAATA 27886 36 100.0 37 .................................... TTGTCACTGTTGACGACAGCGCTCAACCAGTTAGGCC 27813 36 97.2 0 .......A............................ | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 98.3 37 CTTTACCGATTCCCTGAAATCGGAATTAATGGAAAC # Left flank : AATTATAAGTAATATTCACATTTGATTTACTTTGTTGGTACACAGGCTTAATTTCTTCCAGCGCATCTTTTAAGCTAGCAGCGGCTGACACAAGTATGTTGTTTGACTGGGCGACTACACGAGAAGGAGTAACTAGTGGTAAAATAATTGCTAGCAATAAACCAGCAATTGCTATACCCAAAAAGCCAAGAATTTGTCTTCTTTTCATGGAAAAAGCACTTTAGAGGTTTTTTTCATCAAATTGATGCTAGCTAGAATACTACCAAAAATACCAAAATTTACCCAACTATATCGGTAAAATTTTTGTATCAGATGTTCATCGACACACCCCGCCAAATCTTCAAAACCCTATATTTCTCGTTGAGGTGTGTCGATACCTTACAGGACAAGGGTTTGAGGTGTGTGTTTGACTTAATTTTTCACAAGATATATAGTCTTTTTCAGAGGTGTGTCGATTTGGCGGCTGAAAGCCTTGCGGGGCAAAGCCTCCTGAACGAACT # Right flank : TTCTTGCTGTTGAGATGCGGTGCAACATCATAACTTGTAGCCGCCTTAGCAAGGAATCCCCATAAAGCAAGAATCCCACGGCTTTTTGTTAAACTCAGCAAGAGCGATAGTTTAATAGCCGTGGGATTTTCAGTTATGCCTTCTCCATTTCCTGGTATGAATCCCTATTTGGAACATCCTTCTCTGTAGACAGGAATTCATCATACAACAACTCAAGAAAATACGAATTACGAATTACGAATTACAAATTATTAGCCATCTCTAATAACTGTGCTTCGGTTAGCTGGTTAACTCCCAATGAAATGGCTTTTTCTAACTTAGAACCGGCATCTTCTCCTACTACTAAATAATCTGTTTTTTTACTCACAGAATCAGTCACTTTTCCGCCGGCTTTTTGAATCAATGTCTTGGCTTCATCGCGTTTTAGAGTTGGCAATGTACCCGTAATTACGAAAGTTTTTCCAGCAAACTTTTCATTAATATTATTAACTGTTTCTGTT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTCCCTGAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATTCCCTCAAATCGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 63957-64429 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHD01000006.1 Nostoc linckia z8 scaffold6.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 63957 37 100.0 34 ..................................... TACTTGTTTGCCAAATGCTTGAATGCTCCCGAAG 64028 37 100.0 36 ..................................... CTGGCTGTAACTTAGCTTCAAAACTTTCAGCTTCAA 64101 37 100.0 34 ..................................... ACTTTATATAAACCTGAGTTTAAGTTTACCAAAA 64172 37 100.0 33 ..................................... GGGATAAAGCAGACCCTTACAAGCTAGAACCCG 64242 37 100.0 35 ..................................... TACTATATCTGGCAATCCACAGACGGGAAGCATTA 64314 37 100.0 42 ..................................... TGCTTGGACTGAGATTTCAAATCCTGAATGCGCCAATTCTGC 64393 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 7 37 100.0 36 ATTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Left flank : AATGAATGTTGTTGTGTCTTATGATATTTCTGAAGATAAACGCCGTACCAAAATTCACAAAATTCTCAAGTCCTATGGACAATGGGTACAGTACAGTGTATTTGAATGTCATCTGACAGATACTCAGTACGCAAAATTGCGATCGCGTTTGAACAAGTTAATTAAACCTGAAACCGATAGTATACTTTTTTACTTTTTGTGTGCCTGCTGTCTCGGTAAAGTTGAACGTATTGGTGGCGAAAAAATTCGTGATGACTCTATTTTCTTTGCTGAGTGCGCGGATGGGTAGATGTTGAAAACCAAATTGCAGCAAGCAACCTTCAAATTCCTCTGCTGCAAGAGTTTTGGGGAAAATAGCTCAGAAAGTACCCGCGCACCTTATACAGACTAGGTTCTAGCCATTTTCCTCAAACCCAATGTCCATTTCACATGCTATGATTTCCTCATCCGCGCTACCGAACCTTGAAAACCCAATACAAACAATGTTTCAGGCTACCGCC # Right flank : CACAGATGAAACCTAATGTGCAGAGATAGTTAATACATCGCTAATAAAACTGAGCAAACCTCTGCGTACCTTTGCGCTGTCCTCCGCGCCCCTCTGCGTTTAAAAAATTATTTCCACACCTCACTTAACTAAAAATCCCTATAAAAAAGAGAGAAATTAAAACTGATTCCTCAATCAAATAGAAATCATCACATTCAATAGTGAAACACCAATATCCAGCATCCAAAATCCGAAGCTGACTATAGTGTTAGGAACTTTTTTTTTAAGAATTTACCTCCTGAAATATCCGAAATTTGTGGTAATTCAGTTCTATTTAATGATTCAACAAAACTCAAACCCAGAGACTTACTAGAAATGCTTTGAGTGTAGCTAGCATTAAGATAACGAATATATTGTGACTTTCCTGCAATATAACTTTGGAAAAAAGGCAAACTTAAAACAGTCATATAACGACGCGCTTGGGAAGCATCGCCAATCATATCAGCAGGTAATGATACTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 7997-4853 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHD01000054.1 Nostoc linckia z8 scaffold57.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 7996 37 100.0 35 ..................................... ATCACTATGCATAGCCGTTCAACATAGTCAAAACA 7924 37 100.0 35 ..................................... AAAACTTAGGGTGAGTTTGCCAAACAGTGTCACCA 7852 37 100.0 39 ..................................... TGAAATGATTGGTTATAGGTTCCATTACACACCAGCCAT 7776 37 100.0 36 ..................................... AAAATCTTACCGTGATTTATACTCTGAAGGTGTTAT 7703 37 100.0 39 ..................................... AAACATCCTATGTAATTGTCAACTATTGGCACGGTTTAA 7627 37 100.0 37 ..................................... GTGAAGCTACACCCTACGAACTGCTAACAGATCCTAA 7553 37 100.0 37 ..................................... ACTTGCCACCGGCACCAGGATGAATCTCAAGAATGGA 7479 37 100.0 39 ..................................... AACTTATGAAGGGTATGATTGTCTTATTCCAGTTAAGGA 7403 37 100.0 39 ..................................... AATGAGAGAAGACAAGCAGCACAAGAGCTATGAATGGCA 7327 37 100.0 36 ..................................... AACCTCGATAAAAATGGTAGGCCTATTGCAACTCAG 7254 37 100.0 39 ..................................... TGGGTACTGTGGGAAGTCTTACAGCGGGGATGCTTGGGA 7178 37 100.0 40 ..................................... AATTTTCCACCGTGATTTGTACGCCCAGAGTGGGCATAAA 7101 37 100.0 38 ..................................... TGGTCGAAGTATCTTCAGCGCCGCCGTCGCTACCCCAG 7026 37 100.0 36 ..................................... ATAAATAGCATCTGCAAGCTTGTTATCAGCAATCAA 6953 37 100.0 39 ..................................... AAAATCAGACCCCATCGTGGGAGTACGCATTCACAACCA 6877 37 100.0 36 ..................................... AATTAATAATTATCAAAAAAGAGTCTGTGTCAGCTA 6804 37 100.0 36 ..................................... ATAACATAACCTATATTGGAAGTGACAACTATTTAC 6731 37 100.0 37 ..................................... ATATGGATCTGGAGTACCGTACTCGTTCGGATACGGA 6657 37 100.0 39 ..................................... ACTAAACTGTGGCTTGCGGGGGAACCTCCAGCACCAACA 6581 37 100.0 37 ..................................... AACTCTTCAAAGTCTTTGTACCCACCTTGGGGTTTAT 6507 37 100.0 36 ..................................... GATAAGTTATGGCACTCGTTAAATATAAGTGACTTA 6434 37 100.0 33 ..................................... ACTTACAAAACTCTGCAATGTTTGAAAACTTAG 6364 37 100.0 37 ..................................... GTCCTGAACAATTTATCGCCGATTTTGACGAATCGAC 6290 37 100.0 37 ..................................... ATTATCCCCTTTATTCCATTGATTCTTCAAATACCAG 6216 37 100.0 37 ..................................... GATTCCGCTTGTCTTTTTTACCAGTAAGGGCGATCGC 6142 37 100.0 35 ..................................... TTGAAGCGTAAAAACGAGTATTAGAAGAATCTACC 6070 37 100.0 38 ..................................... AATCAAAGAGCATTATCACATGATTAATATCACTGGCA 5995 37 100.0 36 ..................................... CTTTAGCGTGAGTGATAGCTCTATCTGTCAGAACAT 5922 37 100.0 36 ..................................... CAGCCCGTAACCCGATCGCTGATCGAAGAATAGTTG 5849 37 100.0 39 ..................................... TTTTGTGGTTATGTACGGTTTTTGTGTTGCGATCGTAAT 5773 37 100.0 37 ..................................... CGCCAGATGCTAAACACCCTGCATATGAGTATGCCAA 5699 37 100.0 36 ..................................... ATCGCATCCTAGATATAGATGTCGGCGTCACCCCTA 5626 37 100.0 40 ..................................... TATGCAGAGCATCTAATACCGTACCCCACACGCACCTAAA 5549 37 100.0 37 ..................................... AACCGCCTTGACGGACAAGTTCGCTACATTACCGATC 5475 37 100.0 36 ..................................... CAGTGTGATTGTGGCAGGATCGTTGAAGCAACTAGA 5402 37 100.0 34 ..................................... TGAAGTTTATACCCAAGTTACCGAGGCGGTTTAC 5331 37 100.0 36 ..................................... ATCGCTGATTACTAATCCAAAGAGCAATTATTCCTC 5258 37 100.0 37 ..................................... CGGATCTAAAACTTGGAGCGACGATGACTTGCACTGG 5184 37 100.0 38 ..................................... ATTCAATGGGCGACTGATTGGGGAATCGCCACCGGACT 5109 37 100.0 38 ..................................... GTTGGTGTGGGAAGTTGTCGCTCTGGCGTAGATCGTTG 5034 37 100.0 38 ..................................... TAGCATGGATGAAAAACAAGGCACGGAACCCAACTTGA 4959 37 100.0 33 ..................................... CAACAATTCGACAAGATATTGCAACCTGGGCAG 4889 37 97.3 0 ......................T.............. | ========== ====== ====== ====== ===================================== ======================================== ================== 43 37 99.9 37 CTTTCTATTAAATGAAACCCGGCAACGGGATTGAAAC # Left flank : GCGATGACAGAGGACAAACACATCCCGATGGTGGCTGAAGCTTGGGAGCCTTTTGAGCAACAAGACATTCAGCAATACACCCAAGCGGACAATTCTCAACTCCTGGGTTGAGTTGAGAGTAGAGGGGTTGTAAAAAAAGCTTCACCTGACTTACCCTGTGTTATTTGCACCCAGTTTAGTACTGGTTTCGGGAATATTGGCATCAAAAATTGATATCAATGCTTTTTCTTTGCTTGACCCTAGATAACTTTTGTAAAGTTAGATTTTGTGGAATTGGGAAAATGAGCTTATAATCTGAACCAAGTTAATTTTTGGCAGGGGAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCCACAGAACCTTGACAATTCAATACTTTCAGCCTTTGGAGTATTGTTGAGTTCGCTGTTTGCAACGGCTGAAATGGACTTTTAAAACAGTCCTGCCAAATTTACTTCTAGAACTTGGTTTATCACTAGGTTCTGGCTGGCGGA # Right flank : AAAATAAAGAGTGCTAGATTTTCACTTAGCACTGTCAAGATTTTTAATTTATCTACTATTTTTGACCTTGATTAACTCTTTTTTCCAATTCAGCTTCAGCCTCTTCAATCGACATTAGTCTTGGATTTGGATTAGCCGCGTGCAAGCGATCGACATAAGCATGAAAAGCTTCAGTATTTTCCGGATTTTGCAATACGTAAGCTCGTAATTCAGCATCCGTCATGTTTGCAAAATTGGGCTGTGTCATTTTGTAACCACCTCCCCGTTAGGATAAATTTCTATCTCTATTGTCTCTTTGACTCAATACGGTTCAGTTAAGGCTAAAACTCTTTGTAAAGATTAATTTTTTTAACGAACCGCAGAGGCGCAGAGAACGCAGAGAGAAAGAGAAAATGCTTAACTGAACTGTATTGCTTTTTGACTAACGTTACTATGCGTTTTGTCCTTTCGTCCATTCGCACTAGATTTATTGGTCGCAGCAGATTGCTCATTCTCACCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATTAAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 19430-21359 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHD01000054.1 Nostoc linckia z8 scaffold57.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 19430 37 100.0 34 ..................................... ATCAAAAAGCCCTGGAATGCTTTACACGTTCCAG 19501 37 100.0 33 ..................................... ATTCTGCTGTGCCGAATGTCAAGCCGCCGTCAT 19571 37 100.0 35 ..................................... TAACCTTGGATAAATCTGTCCTACTGTTGGAAGTG 19643 37 100.0 34 ..................................... ATCTCGCCGATTGGTTGAATTAACACCTACACTT 19714 37 100.0 38 ..................................... TCAATCAAGGCTTTCAAATCCTGTTGTCTATGTTCAGA 19789 37 100.0 35 ..................................... AAAAAGTCACTCTTTAAACGTCTTACATTTAACAA 19861 37 100.0 33 ..................................... CAACAGTTACATCCCAAATTACTAGCGCTTTAA 19931 37 100.0 37 ..................................... ACACGCTCGAACGGCTTGCACGTCAACAGCAAACACT 20005 37 100.0 35 ..................................... AGTATAGTTGCACCCTGGATTAATAAAGAAAATAA 20077 37 100.0 36 ..................................... TTTCATTAGAAACACTAGCTTATATACCGTACTTTG 20150 37 100.0 35 ..................................... TTTAAGTTCTATACCTGAGATTGATGTATGACAAC 20222 37 100.0 37 ..................................... ATAACCTTCCTATTTCGTAATTACCAAATCCAAATAA 20296 37 100.0 34 ..................................... TCTAGAAGATTAGGACAAAGATAAAATATAAGTG 20367 37 100.0 38 ..................................... ACTTATATAAAATCTCTATATACCCGGTTAACCCCAAA 20442 37 100.0 37 ..................................... AATATAGAGGGCAATTAGGGGCTTATTGGTGTGCTAG 20516 37 100.0 37 ..................................... GATAATATGTTTTCTGGTTTTTCAGTAATATATACCC 20590 37 100.0 34 ..................................... TCTCGGCTGACATCTCCCAAAAGTTATCTTGATT 20661 37 100.0 37 ..................................... GTTTTACCACTTCCGTCTAATCCTTCAAATGCGATCC 20735 37 100.0 36 ..................................... TGAGGTATCCGCCATTGCTTCGGGCTTCTGACTGAA 20808 37 100.0 37 ..................................... TCTTTCATTGATGTGCGCTATCTCTACTGGACTAGGA 20882 37 100.0 35 ..................................... TCTTTGCTGGTGGGACAATCTGTAATTCGTGGTGA 20954 37 100.0 37 ..................................... TTAATTCTGTTTGTGCTTGTCTCACTTGCTCTTTTAA 21028 37 100.0 37 ..................................... AATTTTTACCGTTTTTACGTGATTCAAGAATTTCTAA 21102 37 97.3 34 .............C....................... ACTGATAACTGATTACTAATAAAACTATTGTGAT 21173 37 100.0 36 ..................................... ACGATAATTTTGTTCTTGAGGATGTCTCGGCTATTC 21246 37 100.0 40 ..................................... GGCTCAACTACTTACTCAGTGGCCGGTTTGCCTGATGCGA 21323 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 27 37 99.9 36 CTTTCAATTAAATGAAACCCGGCAACGGGATTGAAAC # Left flank : ACATAAAATGCTTTGTGGTTACGGAACTTGGACGCAATACAGCGTATTTGAATGTTTTTTGACCGCCGTACAATTTGCGAAACTCAAGGTGCAAGTTGAAAAGTTGATTAAACCAGCCGAAGATTCAGTGCGTATCTATGTGTTGGATGCTGGCGCAGTGCGTAAGACTATTACCTACGGTTCCGAACAACCTCGACAACAGGAGACGATAATCTTATGATGTTTGACTGTTGATTGTTGACTGTTGATTGACAACTTCCACAACAGGAGACAATAATATTATGATGCTAATACAATGCTAGTAAAGTTTTTTGGCAGGGGAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCGTCAGAACCTTGACAATTGAATATTTTTAGCGTTTTGAGTTCTGTTGAGTTCGCTGTTTACAACGGCTGAAATCGACTTTGAAAACACTCCCGCCAAATTTGCTTCTAGAACTTGGCCTATAACTACGTTCTGGCTGGCGGA # Right flank : CAGCTATGGCAGATATAACAAACCACAGGACAAACTTTCAATTTCAATGAAACCCGATCGCTCTATTACAACCAAAAATCTCAACACTAGGCAAAATAGAACTGAAAACGGTTTTCAAATTATCATAATTAAAAATTCCCATGCTTCAAAGTCAGCGTTTATCATAAATAAAAAAATTATTTATTATGAATGCTGAAGATTTTTTCCACCAAGGATTAAACAAAAATTTGCAAGGGGAATACCAAGCAGCCGTTACAGCTTACACCCAAGCAATTAATCTCAATCCAAATTACGCCGAAGCATACCATAATCGAGGAATTATTTCAAGTAGTCTCACAGATTATCACAGTGCGATCGCCAATTTTAATCGCGCCATTGAAATCAATCCCAATTTTGCCACAGCCTACTATCACCGCGCTAATGCACGCTACTTTCTAGGAGATTACGAACAAGCCATCGCTGACCATAACCAAGCATTGGCAATTGACCCCAATCTCGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTAAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 52215-51211 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHD01000013.1 Nostoc linckia z8 scaffold13.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 52214 37 100.0 35 ..................................... GAAATATCCACCCCAACCTACAACATGATGCCAGT 52142 37 100.0 36 ..................................... TATCTAACAGATCTTTATCTTCTATATTAATTTCAA 52069 37 100.0 37 ..................................... TTTTAACATTAAATACTCTTCTCTCTCTTTCGGAGGG 51995 37 100.0 39 ..................................... GGCATCAATAAGGGAATTATTACTATATACATAAAGGAA 51919 37 100.0 34 ..................................... TGATTGCTTTCACGTTGCTGGCATAGTTAGCAAC 51848 37 100.0 36 ..................................... CCTGATTTGGCAGGTGTCCAATCTAAGGATGACCAA 51775 37 100.0 35 ..................................... ATTGCTCAGGGGTAAATCGGAGTCGGCGCGGTATT 51703 37 100.0 36 ..................................... GTCTTTAGCCCCAGATGTTGCTCCATCCAAATAAGA 51630 37 100.0 47 ..................................... TTGATTTGGGTGATGCGATCGTTTAGCCCATCTTTGATGTAGTCAGC 51546 37 100.0 34 ..................................... TCTTAAAGTAGAAATTGAACTTACCGATAAGTTC 51475 37 97.3 37 ......................T.............. GAATTGATTTTGTGCTGGAGTTCTGGCTCTTGGAGCA 51401 37 100.0 37 ..................................... TAAAGTTTCACCATTTACTCTGTACAGATGGGGTGAA 51327 37 100.0 43 ..................................... TTTTCCAAAGATACACATGCAAAAATGTGCATATCAGTCACAG 51247 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 14 37 99.8 37 GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Left flank : AGAGTGAACACAGCCCAAATCCAATTAATACCCCACGCATGGATTTGTAAACCGGCGGATACCAGCAAAAAAATGATAATAAAAGCGATGGGCATTGCCAACACAACCCATTGCCACAGCTTTAATCGCACCATTACCCTACACCTTTTAAATCACCTTGTAAAAAGTTTATCGTTTTCAATTTGGGTAGGATAATCGTTCTATGGGTTGAGTAATGAGTTATGACTGTTGACTGGGGGTTTTAGCAATGATTTGCGCGGAGCTTGGCTGTTTTTTTAGACAGTAGAATATTTTAGGCTGAAATCTTTACTGTGATTGTATTTGAGCGATTTTTGCTAAAAATAGATCCGCGCAAGCTTTGAAAACGTTGTGTTACAAGGTTTTCAAGGATTTTTGTTTAACCAAAATCTTGACAAGCGATCGCTCAAACGTTAATTTTGAATAGACCCGCGCAAACAGACCTTACAACCCTGTTTTTGCAAGCCTCCCAGAGTCTTGCT # Right flank : ATACGTTCAGAAATTATAAACCCGCTTAAGCGGGTTTGTTTGTTTAGATACTATCTATAATTCAATACGATTCAGTTAAGCATTTCTTCCTTCTCTTTGCGTCCTTTGCGTCCTTTGCGGTTCGTTAAAAAAATTGACATTGACAAAGACTTTTAGCCTTAACTAAACCGTATTAGTCTATAATCCAATACACTTCAGATAACACCAAAACACTTGTAGACAGCGATTTATCGCGTCTGATAGTCCTCTGCCTTTCTTGATAAATAGAAGAACTAAATTAAACCTAACTCGATATCGCCGGGTTTCCACACTTCGACAGGCTCCCTTCGACAAGCTCACGGCGGCGCAGTGCATCGCTGCACTCAACCCTCTTGGAATAAGCTTAACGAGCATTGAGCAAAGTCGAAATGCGTCTTCTAAATAATTGTGTCCACCTACTTCAACTAAACCTTATTTAAAATTCTGAATTCTGACTCCTGACTCCTGACTCCTGACTCCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 42556-41130 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHD01000019.1 Nostoc linckia z8 scaffold19.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 42555 37 100.0 38 ..................................... ACTTCAAAAGTGCTTACGTGGTTTGGGAACCTGAAAGG 42480 37 100.0 36 ..................................... GTTTCTATTTTAACCGTACTTATACGGATTAATGTT 42407 37 100.0 37 ..................................... TTTTTCAAAAATTTTAAAAATTATCACCACCCTGGAA 42333 37 100.0 38 ..................................... ACTCAAGACGCGATGCCAAAAGGTATCAATTTAGATTA 42258 37 100.0 37 ..................................... AATATACGTAGGCTTTCTGAACTCAATGATTTTATGC 42184 37 100.0 40 ..................................... AATTATTCATCTCGCTTCGGTCTTTATTGGATATTTACAA 42107 37 100.0 37 ..................................... GATTCAACGACATTATATAAACGGGCAAATAATTATT 42033 37 100.0 36 ..................................... TTATCAAAACTGCAACCGAAATAAACGCAATCACTA 41960 37 100.0 34 ..................................... TAACATCTAAAGAGGATGTAGTTCCAGGGGCTGT 41889 37 100.0 36 ..................................... CTGCTGGTTCTACCCTTGGTGGGTGGGGTGGTGCAA 41816 37 100.0 34 ..................................... GTAGAACTCCGGGCTATGCAGCTGTACAAGCTGA 41745 37 100.0 35 ..................................... CTGTGCTTACAAATCCATTGCCTGCTGGGGCTTCG 41673 37 100.0 33 ..................................... AACCAAGATGGAGATTCGTAAAAATTGAGGGGA 41603 37 100.0 38 ..................................... AACAAGCAACCCAATTAGCATCCCTGGTCTTCCACTCA 41528 37 100.0 37 ..................................... TTCAAAAATACTTAAAACCCAATGAATCAGAAGCCGC 41454 37 100.0 37 ..................................... GAAACCCTCAATTCACATGCCCCGCACGGTTAGTCGG 41380 35 91.9 34 ............................A..--.... GAGGGACACACAAAAAACAAAAGCAATCAGAAGT 41311 37 70.3 37 A..........GT..T...T..C..AT..T..A...T CAGGAAAAATGAGACTTTGCTCGATAATACTTTTTAC 41237 37 73.0 33 ....A..A.G.AT...T........AA...C...G.. GATGTTTGGAAATTGACAATTTTTTTGGAGAGA 41167 37 70.3 0 ....T..A..TT...TT.AAA.T...T.......... | C [41161] ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 95.3 36 GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Left flank : ATTAGCGATCGCGGCTTACGATTCTCGCAAAATAAACTGATTGACAAAACACCGAACCTTGACAATAGAATGAAAATATTCAATAGCGCCGCAGTTCATACTTGTTACAAGTCTCTGTGCTGCGTAAATGTGGGTTAGTTTGACTGCTGTTAAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTGTCCCTTGTGGATAGGAATTAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACTGAATCACCTCCGACCAAGGAGGAACCCACCTTAATTATTTTTTGGCATGGTAAAGCAGGGGCGATTTCCCTGGCACTCCTGCCAAAACTTTAAATCGCTTGTTTAATAAGGTTTATAGCCTTTAATGTGTCAGTTGATTTACTTTTTTAAGTATTAACTGACCAGCGATTTTGGGAGACATGACAAAAATGCCTTCAGAACTATTGGTAAATCAAGAGTTTGAAGCGCAGA # Right flank : ATTGGTAAAAGTCATGGAATTCTTGGACTAATAGGACAAAAACTTGTCAACTTACAGCAATTTTCATTTCTTTGAACCACAAATCCCCATAGGGGGGTAAGGTCTTGCTGGCAAGGTTGATGTATGACAGTAACACACCACGCTGAAAAGTTTAACGATATTTTTAACGATATTATTTTGTTAATGGTTAGCTAACACAATTGGATTACATAGTGAATGCGGACATTATTTTGGCAATACTGACATTAATTTGTCAACGCGGACAAATAATTTGGCAATCGACAACAGTCAACAGTCACCAACTTTCATCGAACTCACGTTAAGTTAAATTCCGTGACTTTTACCAATTACCCAATTACGTCGGAAAAAACGAGCTAAGGCTGACTCTTCTAGTGATAAATAAATTGGGCGTCCGTGGGGACAGGTGCGGGGGTTGCGAGTGCGTTGCCAATCATCTAAAAGTGTCTGCATTTGTTGTAGATTCAATGGCGTACCGTTCC # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [35-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 14661-14187 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHD01000163.1 Nostoc linckia z8 scaffold193.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 14660 35 100.0 38 ................................... ACGATCTGTTCCAGATGTTCCCCAAACATTTACAGATG 14587 35 100.0 39 ................................... GACTGAGAAAAAAGGAAAAAACTAAGCCATAAGCTACCT 14513 35 100.0 39 ................................... TAGAGCGTTCCTTCTCTGACAAAAGTCGAAGCAGTCCAG 14439 35 100.0 37 ................................... TTAACTGAAACTCGTTGAAAGTTTCATGGGTTAGGGT 14367 35 100.0 37 ................................... AGTTCAAAATCCAGGTACGGCTGAAAGACATACTGAT 14295 35 100.0 39 ................................... CCTTGAATTCTCTTTACTAATTGAGATGATAATGGCAGA 14221 35 97.1 0 ..................................T | ========== ====== ====== ====== =================================== ======================================= ================== 7 35 99.6 38 CTTTTAGCTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : GAGTTTGTAGTAAGCACTTCAGTGCTTAAAAATCAAGGACTAAAGTCCTAACTACAAACTTATTTTACCCCTTAGAACTAATGCGATAGACCACTAGGAAACGCTATAAGAAAGCCTATCCCAATAAAAAAGTTGAAGGTTTATTCAACGGCAAGCCACTCTAATCAATAGAATTAGCCCTCGCAAAACTGCTAGGGCTGTTTGAATGTTGTGAAAAATTGCCAAGCCAAAGAAAGTAGTGATTTTTAAGATGGATGTATCATCCTTTGACTCGGAAAAAATAGTTCGGATAATGTAAAGAAATGTAAATTTGCGGGGGGTAAGCAATGGCTGAAACCCTTATTCTATCGTTGACCCCCGCAAATGCTCTCTGGGTAAGGGTTTGAGGGTTTTTATCTGGCGTTTATTGCTAGTAATTCCTATTTATTGGAGCAATATCTTGACCCCCGCAAAAATGAGGGTGTACAATCCAGTGATGGTAAGCCTTCTAGAAGGCTACC # Right flank : GTAAAAATATTTCTAAAACAAGATACCCAACTTTTTTTAAGTCGGGTATCTTTTTTCAGGAATATAGGACAACACCTTTATTTAAGGTTTATTGGTAAAAAACTGGTTTTTTAGACGCGATTCATCACGTCTTTACATGAATAATTTTATGCTTAACTGAATTGTATTAGTATATAGGACTTATGCATTAAGCAGATATCATATTATTTTGCAATACAACAGGGTACGATCGCATCTGTACCAGACTGAGCTAAATCGCCTTGTTTGAGTAGCTCGATCCAAGCCGATATAATTTTTGGATCTTTGTCTTTGGTATTTTGTAAATTTTCTCCTAAAGTTGTTAAAGCATCATACCAAAGACCATGTTTTGCAAAAAAACTAGCTTTTTCCAATGGGGTTTTAGCGGCTGCAAGTTGTTGTGATGATGCATTGAGAGTCACTTGTGTGATTGAACCTTGGACGTAAACAGCAGCAGATGGTTTGTCAGGATCGCAATAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAGCTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 2407-700 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHD01000162.1 Nostoc linckia z8 scaffold192.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2406 36 100.0 37 .................................... TTTACCACTACCTCAGCAAGTGGTTTTTCGTCGTCTG 2333 36 100.0 37 .................................... AAGAATCACAAAAAGAATGAAACAGACGACAGCGGTT 2260 36 100.0 38 .................................... ACCATCCGTGATACCTCCTCCAATAATTTCATTAGTGC 2186 36 100.0 36 .................................... GCATATACTTCTGAAGTGTTGGTTTGTGGGAAAGAT 2114 36 100.0 32 .................................... TCGTATTGCGCTTGATTGGCAGCTTGAACAAG 2046 36 100.0 35 .................................... TTTACCGTGGCGTATGGGCTTTTCGCTTTAACTTC 1975 36 100.0 37 .................................... TTTGTATCAGGTGAACTCATGCTTCCGCTTTTATCGA 1902 36 100.0 35 .................................... CTGTCCGTAAACCTCAACTGGCACATATTCGACAT 1831 36 97.2 38 ..........................G......... GTTTGTAAATTACCCTTAGCACTATTTTGTTCCCATCC 1757 36 97.2 36 ..........................G......... TTTTTACGGAACTATCTTGTAGTAGAATTGCGTATT 1685 36 97.2 36 ..........................G......... CTTGCGGGGATGGGGCCGTACCAGTCACGCCGAGCG 1613 36 97.2 35 ..........................G......... TTTTCTTGTAAGATTGATTTCCTAAATTCCCAGTA 1542 36 97.2 35 ..........................G......... TTCAGAATGCCATCGCTGGCTTTTGTTTCAATTTC 1471 36 97.2 39 ..........................G......... TTTCCTGTTGCGCGATGATTGCAAAAATGTCGCGGTACA 1396 36 91.7 36 ..........C....G..........G......... TTCTTAGCTGCGCCGGCAAAAGTGTCGTCGTCTTGC 1324 36 91.7 36 ..........C....G..........G......... CATTGAGCTACGAGCTTCATCCTGTATACGCAGCTG 1252 36 94.4 34 ...............G..........G......... AAAGGGGTCATCGGCGACGACGACCACATCCTTG 1182 36 91.7 39 ..........C....A..........G......... GCCTAACACACCATAGACAAACAGCTGTTGTTCGGCCGA 1107 36 100.0 37 .................................... CCTTTGTTTCGTAGATAGCCGGCGAGTAAACCCGCCA 1034 36 100.0 36 .................................... CGTCTCACCAGTCTCGGTGTCTGTGATCTCCACCGA 962 36 91.7 39 ..........C....A..........G......... CTTCTGGTTAGGCACTCCGTTGCGTTCCAGTTGGAAGCA 887 36 91.7 39 ..........C....A..........G......... CTTCTGGTTAGGCACTCCGTTGCGTTCCAGTTGGAAGCA 812 36 91.7 41 ..........C....A..........G......... TGTTTCATCATACTATCCGCACCAAACATTACTGTTTGACC 735 36 88.9 0 ..........C....G..........G.....G... | ========== ====== ====== ====== ==================================== ========================================= ================== 24 36 96.5 37 CTTTACCGATTGCTTTAAATCGGAATTAATGGAAAC # Left flank : TGGGGGCGAACAACCGTTATTGGTGTCAACTTAACGTAAAACCCTTGTAATGACGTTAGAGCAAACTTACTCAATTACTAACTAATCGACAGTCACCCCACCCCGGTTTTGTCTAAAGCCAAAACCTCCCCTCCCCGCCTGCGGGGAGGGGATTGAGGGGTGGGGTAAAATGGCTGTGGGACAAGCGTTTAAGCTTAAGTTGACACCAATGAACAACCGTTCGCCCCTACAACGTGGTTTATTTACCTGAAAATTGCTGTAAAATCATGTGTTGCGATGTGTTGACAATGCACCCTACTAAGGAAGTTTGAAATGTTCATCGACACCACTCGCCGAATGCCCGAAACCCTATATTTTTCGTTAACTGGTGTCGATGCTTTGCAGGGCAAGGATTTGAGCTATGTATTTTACTTAATTTTCCACCAGGTATATAATCTTTTTCAGAGTGGTGTCGATTTAGCGGCTAAAACCCTGACTGGGCAAAGCCTCCTGAACGAACT # Right flank : CCATGAAAAAGAGAAATCCCCGACTTTTTTAAAAGAGTCGGGGATTTTTTTAACGGATGATTTTAAACAGCTACTTTCTCAACTCTTTATTGCAAGAAATAATCAGCATTTATCAGTAATTTTTTCAAGAATTTTATCTAAACTTGATATTTTAAAGAAATTGAATCAGTAAAAGCCGTAATTGCTTACTCAAAAGCAAGTTTTACTTTCTCAAACCCCAGTTTGCTTTCTCATTTTGGTGTTTTGCATAAGTCAAATGAACTTGGCAGAACTTGTTTTTCAGCTAATAATTTTCTCAGTTTGATGACAGTGGGTGAAGGATGCGTCGCTGTTCTTCCTGCATTCTATGATTCCACTCCAACCAATTAGCTATATAGGCACTGACAGCTTCTTTATTGTGCAAATAATAAAGAATAGTCGCGTAAACTTGTTCTAGTGTTAGTGACAGATAACTTTCGGCAATTTATTCTGGAGTTCAAGCGCGGTGGATAAAATCATAA # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTTTAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATTGCTTTAAATCGGAATGAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //