Array 1 10820-11884 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNI010000225.1 Streptomyces sp. SID9727 contig-16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10820 29 100.0 32 ............................. GATCCGCCGATCAGGACGATGACGTGGATGTG 10881 29 100.0 32 ............................. GAGCTGGGCGCCATCGACGGGGCCGGTAACGG 10942 29 100.0 32 ............................. GCGCACGGCGGTAGATGACGATTCCCTCGGAC 11003 29 100.0 32 ............................. GGCCTCCTGGTCCACGTCGCCGTCTCCAAGAC 11064 29 100.0 32 ............................. TGGGCGATCCGGCTGGTGAGGGCCGAGGATTT 11125 29 100.0 32 ............................. CGGCTTGCACTGAGGGAAGATCACCGAACCGG 11186 29 100.0 32 ............................. CTGGGGCTCGCCATAGACCTCGCGATCAACTA 11247 29 100.0 32 ............................. AGGCTCCATGTCGTCCAGATGAGGGAGCCGAA 11308 29 100.0 32 ............................. GAGGCCGTCACCCAGGCGAACGAGGCCCTTGC 11369 29 100.0 32 ............................. TCGGCAACGGTGCGCCCCTGGTGGTTGGTCAC 11430 29 100.0 32 ............................. TCCGGCCATCTGAACCTCCCTGGGAATCACCG 11491 29 100.0 32 ............................. CAGTACCAGACGGCCATGGCGCACCACGGGCC 11552 29 100.0 32 ............................. GGGGCGGATTCCCGGCACTCGTCAAGCTCCTC 11613 29 100.0 32 ............................. GACGTCTCGTACGGCATCGAGACGGAGAACCG 11674 29 100.0 32 ............................. CAGAGCGGCCGGGCGGTCTTTGAGCATCCGGA 11735 29 100.0 32 ............................. TTGAACGTCATCTGGAGCGGCATGACGTCGCT 11796 29 96.6 32 .........................G... GACCTCCTGGAACGGCTCACCGTCACGCGAGC 11857 28 82.8 0 CC.........T.A...........-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.9 32 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : CCTGTTCGCCCCGATCCCGCTCGCGCAGGTCCTGGTCGCGGACCCGGGCGACGGCACCCTCGCGGGGATGGCCGCGTACTCGTTCCTCTGGCCGGCGAGGGGGACGACCCATGCGCTGTTCCTGAAGGAGCTGTACGTGAGTGAACCGTGGCGGGGAGGGGGCGTGGGCGCCCGCCTGATGGCAGAACTCCGCACGGTGGCGTCGGCCCGCCCGGGGTGCAGCCGGATGGAGTGGATGGGTGATACGGACAACGCGCCGGCGCTGGGGTTCTACGGGGCGCTGGGCTTCGAGGTGGTGGAGGGGAAGGCGGTGTACCGGGTGGGGGTGGAGGGGTGAGGGGGTGAGGGGGTGGGGTCCGGTGAACGGGGGGTGGGGGCACGGGTGTTGGCCTACGCTTGGGATGTATGCGGACTGTGTGGATGTTGGGGCGGTTATGCCGGAGTGAGCGAAAGTGGTCAGAAACCACGCCGACGCGACACAACGCCGCAGGTCACGAAGA # Right flank : CGACGGCGGCCGCGCCTGCCGCCGGGCCACGGCACGTCGGTCAGGACTGCTGGCCGCCCGCCTGCTTGACGACCTTGTCCGTCACGTCGACAGTGTCCCCGGAGGCGGGTGCGTCGACATCGACGTCGGTTCCGAAGTCGCTGAAGTCCATGACGACCTTCGCCTTGCCCCGGTTTGCTGAACCGGCGCCCTTCGCACCCCCGGCCGGCTGCGCGGTCATCTCGATCTGCTGGCGGCGCATCAACCCCTTGCCGTCGACCCACAGGTCCACCGGCACCGTCTCGCCGAGTTGTTCGCGCAGTTTCCGAGCCTGCGCGGCGTCGCCCTTGGCGAGCTTGTCGATGTCCAGGCTGACCTTGTAGTGCGTCGTCTCAACACCACCCAGGCTCTCCGTGCCGACCTTCTTCACGTCCTTCTCCGACAGTGCCTTGGAGTAGGCGAACGAGTTGGTCGGATCGCTCACCTGGTTGCTTCCGGCGGCCCCGGAGGCACGCAGCTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13184-13991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNI010000225.1 Streptomyces sp. SID9727 contig-16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13184 29 96.6 32 ........T.................... ACCGTCACCCGCAAAGCTCTCGTGCCGCGCAC 13245 29 96.6 32 ........T.................... GCGACCGCGTGAGTGACGAACTGGCCAAGCTC 13306 29 100.0 32 ............................. CCGACCCAGAAGACGCCCCCGGCGCTCGGCGC 13367 29 100.0 33 ............................. GTCACGCAGTACGGGCGGCCATACGTGCAGATC 13429 29 100.0 32 ............................. ACGGCCAACCAGCGCGTCTACATCGGTCTGTG 13490 29 100.0 32 ............................. GTGGGCCCTGCCGGGCACCCCTCCCCTCCCGT 13551 29 100.0 18 ............................. CCGGCCAGCCCCGACGCC Deletion [13598] 13598 29 100.0 32 ............................. TACGCCGAGTACGCGCAGGCCCTCCGCCACCT 13659 29 100.0 32 ............................. GGCACGGACGGCTGGGCACGGCTCGCCGCCCC 13720 29 100.0 32 ............................. TACCAGGGCGGCACGGGCACCGTCGAAATCGA 13781 29 96.6 32 .....................G....... GTGCAGCGCAGGTTGACGTTGGTGTCGGTCCA 13842 29 100.0 31 ............................. GACGCGGAGCTGACACGGCCCCCGCGCTTGA 13902 29 93.1 32 ...........C..T.............. AGGCCGGTGTGGAGCTCGTCCACCCGGACCAG 13963 29 79.3 0 ........T...A...........AAAG. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.3 31 CTGCTCCCCGCACGCGCGGGGATGGCCCC # Left flank : GAGGGCTTCGAGTCGTTCGCGGATTCGCCCTTGTCGTCCGACCCGCACCCGGCGAGCGCGGCAACGGCCAGTAAGCCCGCCACGCCGTACGCCGCCGCCTTGGACTTCCGGGACTTCACATTCGCCATCACAGCAGCCTCCCCAAATGAGAACCGTTACGTCAGGTATGCGCCCGGTGCCCTGGAGGTGGTCCCGCATGCGAAGCGTCGCCCGTTCTACGCCAGTCGCAGTAGTTTCCGTCCAGGCGGGCTTCCCGGATGCGCGGAGTTGCCCCCGCCTGTGGCCGGCCCCCGGATGAAGGGGTTTTGCGGCGCGCTGGGGCATGGTGAGGTTGGTATGGCGAGATGGCGCGTGCGGCGGCTGAGGGGCACAGCGGCCAGGAGCGTTGGCGTACCCTTGCCGCGTATGCCTGACGTGTGATCGTTGAGATGGTTATGCCGGACTCTGTGAAAGTGGTCAGAAACGGTGCTCCCGCCCAATAGACCCGCAGGTCAGGGAGT # Right flank : CTCTGTCGCCGACGCCGTGTTCTCACTTGCTTGAACGAGTGCCAGCAGGCCGCGGCGGGGCGTCGATGGAGCAGGTGGCAGGGGTTGGGCCGCTTACCCAGTCCTCCAGAAGCAACGGCACTCGAGGCCCACCGCCCATCCCGAACAAGCGGTCTAAGATGCGTCGATGTTGCCCTCCGCTCCGCCGCAGATACCGGCGAACGAACTCAGTCCCGGCCGCCTCTGGTACGCGGTAGCGGCCGTGACCGCAGTCGCGCTGATCGTGCTGGGCGTGGTCCTGGGGGTCTATCGCTTCAACAACATGGTCGACGCGGTCGACACCGACCACCAGTTCGCCAACGGCGACACCTTCTCCCTCCAGCTCGGCCCGGAGAGCGAGCGGACGATCTGGATCAAGGACAGGGGCCCGTCGGCCGCCCAGGATTGCAACATCACTGGGCCAGGCAATCCGCGCCTTGGGGGCCCGGGAATCGATGTGTTCCTCACTCGCGACGAGACCT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 14938-15394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNI010000225.1 Streptomyces sp. SID9727 contig-16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14938 29 100.0 33 ............................. CACCCTCACAGCAATGGCCTCCCGGCGTCTGGC 15000 29 96.6 33 .................A........... TCGACGCGGGCGCCCCGGGTGCGGGCGGAGTCC 15061 29 100.0 31 ............................. CGCTTCCACACAGCGGGCCAGGGAGAGTGAC 15122 29 100.0 30 ............................. GCCGGGCACCCCGCTCCGGTGGAGACCGGC 15183 29 96.6 32 .....T....................... CAGGTCGCGGTCGGGATCTTCGGGACCCAGGC 15244 29 96.6 32 ............A................ TAGAAGTACTACCCACCATTGGGGTGCAAGGC 15305 29 96.6 32 .........................T... GACACGACGAACAAGCCGATCAAGGGCCCGTT 15366 29 82.8 0 ..............A.......CA..A.A | ========== ====== ====== ====== ============================= ================================= ================== 8 29 96.2 32 CTGCTCCCCGCACGCGCGGGGATGGCCCC # Left flank : TCCGCGCCTTGGGGGCCCGGGAATCGATGTGTTCCTCACTCGCGACGAGACCTGGAATCCCCTGTACGACATCGAAGCGTCTCGAACGGGCAACTACAAGATCACCTGCTCATCCGAAGGACCGTCCCAGTACGCCATCGGGAAATCCGGAGGCATCGTCACGTTTCTGGGTGGGTCGATTCTGGCCGTCGTTCTGCCTGTCATCGGAGTCAGCCTCGGTGCTGTCATCATGATCGTCACGGCCGTACGCCGCAGAGACCACCGCAAGCGGCTGCTCGCTGAGCGGCTTTGACGGCTGCGTAGGACATCGGTGAACCGTGCAGGCAGCGCAGCCGATGTGATGTCGTTCGGCTTAAGGAGCTTGCGAAACCGCGCGAATTCATCAGACGGGGCTATCGATCTTTGGCTTCGCCGAAATGGGGCGTTAGGTGGTTGGGTCGAAATCTGTGAAAGTGGTCAAAATTCGTGTCCGTGCGGGATAACGTCGCAGATCACGAAGA # Right flank : ATGGCCCCGCCCCGCACGTCGACCGCCGTGAGTGGCCTCACCTGCTCCTCGCCCCTGCGCACGGGCCGGTCCAGGGGCAAGCCCAGGCCCCCAGGCAACACGCACGTACTGACGCGCACAGCGAGGAAATGACCTGCCCCGTAACGAAGTTCGGCCGACTACGGTGGCCCGCATGACCGACGCCGACGCCCGAGCCGACCTGACCCCCGACCTGATCCGCGCCCTCCTCCGCGACCAGCACCCCGATCTCGCCGAACTCCCCCTGGAGCTGGGCGCACGCGGGTGGGACAACCAGGTGTGGCGGCTGGGGGACGAGCTCGCCGTGCGGTTGCCGTGGGCAACCGAGTCCGCAGACGAGTTGTTGCTCAAGGAGCACGCCTGGGTCCCCGTGCTGGCCCCGGACCTCCCGTTGCCCGTGCCCGTGCCGCAGCGCCTCGGCGCACCCTCCGAACGTTTCCCGCGGCCCTGGCTGGTCACCACGTGGGTGTCCGGGGAACCGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31268-31601 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNI010000388.1 Streptomyces sp. SID9727 contig-2000028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31268 29 100.0 32 ............................. CGGCACGAAGTCCGGACGCACGCACGAGCTGT 31329 29 100.0 32 ............................. GATGCGAATACTCGGTTGACAGATCCCGTCTG 31390 29 100.0 32 ............................. GACTCGGTCGTGGTCGGTGCGGCCACGTTCTC 31451 29 100.0 32 ............................. GACGGCAAGCCGGGCCGGTACCGGCTCAAGGG 31512 29 100.0 32 ............................. GGCACAAGGCGAAACGCCAGGGCCGCGAGCGC 31573 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CCCGATGTCGTGGACCCCTGCGAGCCAGACCGCGAGCCGCCGCCCGTCGCGCAGCCCTTCCGGGAGCTCCGAGCTGATGAGCGCCCGAACGTTGGCCGGCAACCACGCGTCCCAAAGCAACCCGGCGACCGCTGCGCTGTCCTCCATATGCCGCCACAACGGCAACCACCCGTCGGTGCCCCGGTCGTGCTTGGCCCACACGGTGCGGGCGGGGGCGGTGAGCCTGGCGCGGAGGCCGGGGTGGGGGGTGGAGTGGCTTGCGGTGGTCATGGGTCATGGATACAGGAGGGGGTCCCGGCGAGATGTTCATACGATGAAAATTGGAGAGGTTAAGGGGTAGTTGTCACGAAGATCCTGCGGCAGCGACGGGCAACGTCTATGATGCCCTCGCGACTTGGACAACTTGATGAGTCAATGGGCAACTTGGGGCGGTTATGCCGGATTCCTCGAAAGTGGTCAGAAACGACCTCCTCGCCGAGTAACGTCGCAGGTCACGCAGG # Right flank : CGGCGTCATCGTCACGGTGACGCCGGGGCTGCTTCAAGTCGGCCGCCGCCCCTGAGCACTGGATCCGAAGACCACGCGGGGAACCCCACCCCCGAAGAACCGGCGCACGCGGCGCCCCCTCACCCCGGCAGCAAACTCCCCCGCCGCCCCAGCAGGAACTTCTTGAACGCCGCCACCGGGGCCGTGTCCGGGTGCCCGTCCAGCCAGGCCACCCCGATCTCGCGCACCGCCCTCGGGGCCGTCACCGACAGTTCCACCACGCCTGGGCGGGCCACCGCCGGGGGTGGGAGGAGGGCCACGCCCAGGCCCGCCGCGACCAGGCCGCGCAGGGTCTCCGCCTCCTCGCCCTCGAAGGCGACGCGGGGGACGAAGCCCGCTGCCGCGCAGAGGTCGTCCGTGATGCGGCGGAGGCCGTAGCCGGGTTCCAGGGTGACGAAGGTTTCGTCGGCGGCTTCGGCGAGGCGGATGCGGCGGCGGGTGGCGAGGGGGTGGTCCTCGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //