Array 1 548223-553614 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046378.1 Shewanella algae strain RQs-106 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================== ================== 548223 28 100.0 32 ............................ AGCCAAGGATAAGCCAGCCGGGGGTGTAATAG 548283 28 100.0 32 ............................ GCAGGGCCTAAGTCCTCAAGCTCCGATACCAA 548343 28 100.0 32 ............................ ACATAGCCGTCAGGGACACCGCTGGTTTGGCT 548403 28 100.0 32 ............................ TGCAGAGGCAATCATTTCGTCTATCAATTTAC 548463 28 100.0 32 ............................ TCATAACTTTTTCCGGCGCGTGGGCGTCCAAC 548523 28 100.0 32 ............................ TGGCGCGGTGAAGTCTATAAAGCGCTGTGTGA 548583 28 100.0 32 ............................ TGTGTTTCCCGTTTTCGCAGACGCATAAACGA 548643 28 100.0 32 ............................ GTAATCCATTTACGCTGCTGCATTTCAAGACC 548703 28 100.0 32 ............................ TACAAGACCAACCTGGATCTGGCCGTTGGTGA 548763 28 100.0 32 ............................ TTTCTGTACCATCAATCTCCAAACGGGATTTC 548823 28 100.0 32 ............................ TCCCTCAGCCCTTCCTCATCAATGTTTGGTTG 548883 28 100.0 32 ............................ AAACAGCCGGAAACCCCGGCGCCAACCTACCC 548943 28 100.0 32 ............................ GAGTTGACCGGGCTGGTTGGCTGCATGGTGGA 549003 28 100.0 32 ............................ TGAACTATTACGAGCTGTGTGGCTCGACAAGA 549063 28 100.0 32 ............................ TCGACAAGCTCCAGCGCAACATCCAACGATAG 549123 28 100.0 32 ............................ ATCTTTCTCTGTGATTTGAACGTAGTATGTTT 549183 28 100.0 32 ............................ AATATGGTTAACGTGTACCAAATACCGTTTGT 549243 28 100.0 32 ............................ GCCAAATCCAGCACTGGCTTATACCAATTACA 549303 28 100.0 32 ............................ ACAGCGAGCAGAAACAGCGTCCACGTGACATT 549363 28 100.0 32 ............................ ATAAGATAAATGCAGTGTCAGGTCGTCATAAC 549423 28 96.4 32 ......................A..... TTGTGGGGATAGATACGGGGACGCCTGGCAAA 549483 28 100.0 32 ............................ TAACTGGCATCAAGCAAAAAGCAGCGTACACA 549543 28 100.0 32 ............................ TCTTGGGATTGGGCGGGGCGGTGTGCCCCGCT 549603 28 100.0 32 ............................ AGCAAACAACCGCCGCGCTGGGCGTGCCTGAG 549663 28 100.0 32 ............................ ATAGTAGCGCTGGACTGCGTCCAGCTTCACAG 549723 28 100.0 32 ............................ TTCTGGCCAGTGAAATCCTGTTGTTCGTTTAC 549783 28 100.0 32 ............................ TGCCAGACAGCCCCGCAGGGAAACCCAACTTT 549843 28 100.0 32 ............................ AAAACAAAACCAAGGTGGGAACGGCCAAATGC 549903 28 100.0 32 ............................ TCTACAGCCTCTGGTGATGGTCGTTTGCTCAT 549963 28 100.0 32 ............................ ACTCATAGTCATCATCAGCAAGCTTTACCCAC 550023 28 100.0 32 ............................ TACTCAAACAGCCGAATCAAGTATGCAATAGA 550083 28 100.0 32 ............................ GCAACATGACACCAAAGCAGCAACTAGCAGAT 550143 28 100.0 32 ............................ ATTAGTCTTCCTGTTGGTTGGCTATTAATGTT 550203 28 100.0 32 ............................ TCATTGCGAAGAACGATGACGCCATGGCTATT 550263 28 100.0 32 ............................ GAATTGCCAACCTCGCTCCCTAACCCCCCAGA 550323 28 100.0 32 ............................ TTATATTCTGTTGCGACGAAGCAAAAATATTC 550383 28 100.0 32 ............................ AATCTGGCCAGTGAAATCCTGTTGTTCGTTTA 550443 28 100.0 32 ............................ ATGCTGTGTGATAGTCAGTGCCTCGGTAGTAT 550503 28 100.0 32 ............................ CTTCATTGATGTTTAGGTCCATGAACGCGCTA 550563 28 100.0 32 ............................ CTTCATTGATGTTTAGGTCCATGAACGCGCTA 550623 28 100.0 32 ............................ ATAAGGAAGGTAAAGCGGAACCTCCTTGTTAT 550683 28 100.0 32 ............................ TGCCATCTGCTGGGCGCCTTTGACTACATCAC 550743 28 100.0 32 ............................ GTAAACTATGCCTCCCTGTCCAGCAAATTCAC 550803 28 100.0 32 ............................ TTTTGGTTAAATCAATGCTGAGATTTGATAGC 550863 28 100.0 32 ............................ GACATGGCGCGTGCCTTTGCCGGAATGAACAT 550923 28 100.0 32 ............................ AACACTAGCGCCTTTCATCACAGAACACGCTA 550983 28 100.0 32 ............................ ACCTTGTCAACGTGCATACTGCCGAAAACAGC 551043 28 100.0 32 ............................ TTGGTCTCGTCGATCACCGGTTCTACCTTGAG 551103 28 100.0 32 ............................ ATCTAATAGGCTCCAAAATTGGCGGGGCTAAC 551163 28 100.0 32 ............................ TGTCAGATGCTGATGGTGGTAATGCAGGTTGG 551223 28 100.0 32 ............................ GTAAACTATGCCTCCCTGTCCAGCAAATTCAC 551283 28 100.0 32 ............................ TTTTGGTTAAATCAATGCTGAGATTTGATAGC 551343 28 100.0 32 ............................ GACATGGCGCGTGCCTTTGCCGGAATGAACAT 551403 28 100.0 32 ............................ AACACTAGCGCCTTTCATCACAGAACACGCTA 551463 28 100.0 56 ............................ TGCTGGCCGAGGCGCCGAGCAGCAGCAAGGAAGGTAAAGCGGAACCTCCTTGTTAT 551547 28 100.0 32 ............................ TGCCATCTGCTGGGCGCCTTTGACTACATCAC 551607 28 100.0 32 ............................ GTAAACTATGCCTCCCTGTCCAGCAAATTCAC 551667 28 100.0 32 ............................ TTTTGGTTAAATCAATGCTGAGATTTGATAGC 551727 28 100.0 32 ............................ GACATGGCGCGTGCCTTTGCCGGAATGAACAT 551787 28 100.0 32 ............................ AACACTAGCGCCTTTCATCACAGAACACGCTA 551847 28 100.0 32 ............................ ACCTTGTCAACGTGCATACTGCCGAAAACAGC 551907 28 100.0 32 ............................ TTGGTCTCGTCGATCACCGGTTCTACCTTGAG 551967 28 100.0 32 ............................ ATCTAATAGGCTCCAAAATTGGCGGGGCTAAC 552027 28 100.0 32 ............................ TTTTGGTTAAATCAATGCTGAGATTTGATAGC 552087 28 100.0 32 ............................ GACATGGCGCGTGCCTTTGCCGGAATGAACAT 552147 28 100.0 32 ............................ AACACTAGCGCCTTTCATCACAGAACACGCTA 552207 28 100.0 32 ............................ TGCTGGCCGAGGCGCCGAGCAGCAGCGAAGCA 552267 28 100.0 32 ............................ AAGACCTACCTGGCCCTCACCGGCAACATAAA 552327 28 100.0 32 ............................ TGCTTAGTGAGTTTTGCAAGCATCGAATGGTT 552387 28 100.0 32 ............................ AACGTCCTGAGGGCTTCCTCCATTTGACGGAT 552447 28 100.0 32 ............................ TGGATACTGTTAATGGCTGGCATTATCCAACG 552507 28 100.0 32 ............................ GGATGGATCGCAAGTCATACAACGACCTGAGG 552567 28 100.0 32 ............................ ACTACAGCAAATATGCCTGTTGGTACCAAGTT 552627 28 100.0 32 ............................ GCGATACCACCAACGGTCAACGATAGGTGCAA 552687 28 100.0 32 ............................ ACTACAGCAAATATGCCTGTTGGTACCAAGTT 552747 28 100.0 32 ............................ GCGATACCACCAACGGTCAACGATAGGTGCAA 552807 28 100.0 32 ............................ ATAACGCGGTCAAAATCGACACTCTTATCATT 552867 28 100.0 32 ............................ ATTATCAAAATGATTAGCGGAACCTTTGACGG 552927 28 100.0 32 ............................ TGATATGCCGGAACCCCACGTTATCGAGTCAT 552987 28 100.0 32 ............................ ACCACGTTTAACGGCCAGCTGGTTCTCTGTAT 553047 28 100.0 32 ............................ ATATAGATCCTGACATGCTGGGGTTCGACTTT 553107 28 100.0 32 ............................ ATCCATCAAAACCCGCACCGGCGTTGTGCCGG 553167 28 100.0 32 ............................ TTCATATACAATCCACCAGGATTTTTCATACC 553227 28 100.0 32 ............................ TTACGCAGCAAAGCGTTCAGCCGAACAACAAC 553287 28 100.0 32 ............................ AAATGTGCGCGGACTACCAAGGCGAAGGCCGA 553347 28 100.0 32 ............................ GGCGCGGGATGCCTGTTCGCGGATCAGCTTGA 553407 28 100.0 32 ............................ TTTCTCAGGCCGAACTGGCGGCGCTACTTGGC 553467 28 100.0 32 ............................ CTACTTTGGTGAAACGATAGCGATCCATAGCT 553527 28 96.4 32 ..........A................. TGGCGCAGATAACGTGGGTCCACCCATTTGTA 553587 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================================== ================== 90 28 99.9 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCTGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAGGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCAGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGTATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : AGTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAAAATCCGAACGTCTTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATGTCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGCGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGCCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4885515-4885723 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046378.1 Shewanella algae strain RQs-106 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 4885515 29 100.0 31 ............................. AGCGCGGGAGATAGCCAAGGTAAACGCAGAG 4885575 29 100.0 31 ............................. GCCCATGCATTCAATGGTGCTACGTTCCTGA 4885635 29 100.0 31 ............................. TTTTTCGGGTATCAGCGCCTGTCACTTCACC 4885695 29 96.6 0 .....................T....... | ========== ====== ====== ====== ============================= =============================== ================== 4 29 99.2 31 AGTGAACTGCCGAATAGGCAGCTGAAGAT # Left flank : TTTTTCAAACTCAGTGAGGTTTCAAAAGTCCCGGATAACTGCAAAGAAGTGCGGTTCAAACGAAATCAAACCATAGCCAAGATATTTGCAGGGAATCGTAGAAGGCGATTGGCACGTTTGAAAAAAAGAGCCGAGGCTAGAGGTGAGCCCTTTACGCCTGCCCCCCGAAACCCACCTAAAGAACTAAACCCGTTTCACTGCATAGCGGTCAGCAGTGCAAGCACAGGCCAAGACTTTTTACTTCACATACAAAAAGAGACGGTGAATCAGGCAACATCGATTGAATTCAATCAATACGGACTCTCGACTAACCAAAAGTTCACCGGAACAGTGCCAGATCTGAACCCATTCAAGCCGAACGATACCCGTTAACCCTTTTTTGTGAGCAACGCTTAACCATCTGAATTTATGCCATTTTCTTCCGCATCTTTTTTAGATGGTAAAAATAGAATAAATTCATTAACCTATTGAACACTAGTGAAATTTTAGATAGTGCTCAT # Right flank : TAAAAACAATCGTTTCGATGTTTAAGTTAATGCAAACAACTGCCGAATAGGCAGGGCTTGTTCTACTTACATGACAAGTGAAAGATGCCCACTTAAGAGGGCATCTTTTTTATGGGGTAGGCTAGGACAGATTCTCCAGATCGTTCGTCGTTAAGGCGAATTATGGTTGCACTGAGCTAGTACACACGCAGGTATAGAGCAAAGCGAATGGATACGGTACTGCGGCACAAAGTTTGGGAAGTCTATGTAAAAGAGAAAAGGCACCCGATCATTGCCTCGAAAATTACACAACCCAGCAGCGATGGGGTGCAACTACACGATGAAGCACTACTCAAACGCACCATAGCCGAACACACCCACGGTAACGAAACCTACATCACATGCTCTCAATGTGGCTGCGGGCTATTTTATCGCTCCGGCAACAACGCCCAACGCCGGGCAGCCCACCTTTATCACAACACCAAGTTCGCAAAAGACTTGTCACTTACAGAAAACTGCCC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGAACTGCCGAATAGGCAGCTGAAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //