Array 1 2945517-2943535 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVX01000019.1 Salmonella enterica subsp. enterica serovar Derby strain 201510930 201510930_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2945516 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 2945455 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 2945394 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 2945333 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 2945272 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 2945211 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 2945150 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 2945089 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 2945028 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 2944967 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 2944906 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 2944845 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 2944784 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 2944723 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 2944662 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 2944601 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 2944540 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 2944479 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 2944418 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 2944357 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 2944296 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 2944235 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 2944174 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 2944113 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 2944052 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 2943991 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 2943930 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 2943869 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 2943808 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 2943747 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 2943686 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 2943625 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2943564 29 96.6 0 A............................ | A [2943537] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2963453-2961775 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVX01000019.1 Salmonella enterica subsp. enterica serovar Derby strain 201510930 201510930_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2963452 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 2963391 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 2963330 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 2963269 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 2963208 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 2963147 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 2963086 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 2963025 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 2962964 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 2962903 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 2962842 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 2962781 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 2962720 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 2962658 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 2962597 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 2962536 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 2962475 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 2962414 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 2962352 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 2962291 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 2962230 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 2962168 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 2962107 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 2962046 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 2961985 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 2961924 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 2961863 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 2961802 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //