Array 1 416713-414949 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSOB01000001.1 Cohnella fermenti strain CC-MHH1044 contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 416712 33 100.0 34 ................................. TTTGATAATTTGGCACATTGTTAAGCCCTCCATT 416645 33 100.0 34 ................................. TCTTATGCGATCTCTGGAACCTTCTCGGCTATGG 416578 33 100.0 34 ................................. CGACTTCTACATTTCCGACGGTGCCCGCTGATTG 416511 33 100.0 34 ................................. AACGCTCCCGTTCCAGCCGGAGAGCCACAATTCC 416444 33 100.0 33 ................................. GTTTCGTGATCGAGGTAACGGAACAACTGCATT 416378 33 100.0 33 ................................. CAGTATCAGGCATTGGAATTTCGGTGCCTGTGA 416312 33 100.0 33 ................................. ACTGGTATCGGGTCGGAGGGATACCAGGCGATT 416246 33 100.0 33 ................................. GCTCGGCAAGATCGATCTGCAGAAGTGGGCCAA 416180 33 100.0 33 ................................. GCGGGATCGACGGCATGTTTTCGGACACAAGAC 416114 33 100.0 33 ................................. GGTCCGGCGCTTTCTGGGCGAGCCGGAGCCGTT 416048 33 100.0 34 ................................. CAGAACCGGGAGCCGGATATCGCCTATTACAAGG 415981 33 100.0 34 ................................. GAACGCGGTCGGCTGAAGCGTGAAATTGGGCAGG 415914 33 100.0 35 ................................. ATCTTCCTTTCTGTTTTGGATAACTTGCTCTACTG 415846 33 100.0 34 ................................. GCTCGAGATGTCCAAGGAGAAGCTTGGTGGCCGA 415779 33 100.0 33 ................................. TGAATTGCGTAGAAGTTGCGCATGATGTTTCTT 415713 33 100.0 33 ................................. GAGCACCGGCGCCGCGGCGATCTCGATCATACC 415647 33 100.0 34 ................................. GCCGATATCGAGTTGAAACTGATCGCATCGATGC 415580 33 100.0 35 ................................. TCGTACCACGCGAGGCAGGTGTTCAACTTGCCAAT 415512 33 100.0 36 ................................. GACTACTTGGCCCGCGCCCATTACATCGGCAACGCC 415443 33 100.0 36 ................................. TACCTCGGAAGGGAGACGGCGTTGGACGACATGATT 415374 33 100.0 34 ................................. CGTCAATTGCCGGTTAGGAAACGCATTTGGACCC 415307 33 100.0 33 ................................. CTCCGTACGCCACCACTCGTAGAAGCAATTCTC 415241 33 100.0 35 ................................. CGCTGCCGCCCGCACCCCGACATAGGTCACGCCGT 415173 33 97.0 33 ..........A...................... TCCCTCGTCATAGACAAACGGTGTGACCGACTC 415107 33 90.9 24 .................G...........TT.. CGCTTCCACTTTTCCCCATAACTC T [415078] Deletion [415051] 415049 33 81.8 34 ..G.......A..CA.....AA........... AGATAATCTGGAGCCTTTCCTTTAACCGTCAAAA 414982 33 87.9 0 ..........A..C........AC......... | G [414965] ========== ====== ====== ====== ================================= ==================================== ================== 27 33 98.4 34 GTCGCAACCCGTATGGGTTGCGTGGATTGAAAT # Left flank : TCCATAGATCAGCATGATCTTCCCCGAAACGCCGAATTTCATCATATTAGCCTTCACAGCCTCCTCAATCCCGGTTTCCAATCACGCCCAGGAATCCATCCTTCGACAAAAACGCGGAATTTAGTATAATTCCACATCTTCTCCTGTGTTCCTGCCAGGGGGCCGATTGGGAGAAGAGGGTGTAGTGCCCAGTACCCGACGCTGCCGCAACCTGTACGAGCCCGTGGATGGAATGGTCGATCCCCTTAACAGGAGGTAAATCTTCTCACTTGGAAAAAGAGGATGTCATCCCCTGTATGCAAATGGTAGAATGGAAGCGTGGCTGATCTCCGGTGCGAATGGCAAGCTCACATGATTTTCCGGGGGGATTCGCACCACGCGCCACGCTTGGGCTGGCGGGTTTTTGAGGGGATTTCCAGCTTCTGTTGGAGGTCTTGATTTCGACATTCGCACTTTTGCTGCCCGGAGCCTTACTCCCGCAAGGGCTCGCTACAGGCGCT # Right flank : CATACCAGTTGCGTGTCATTCAGGAAGCGCTTGGCTGATTGTGATTCCGCCCCCCCGATTCCTACGACACCTGTCCGGCCATGACCTTCTTGTGCCGGGGCAGGAAGACGACAGCAAGAAGATGGACGGCGGCGATGGCGAGCATCAGCGCGAAGATGGCGTGCATGCCGTCGACCAGATCGGCAGCAGGCGCGGCATCGGAGAGCACATAGTGGTTGAAAATCGTTCCGAAAACCGCCACCCCGATCGTCTGCCCCATGGAGCGGATGAGCGAATTGGTCGACATGGCGACACCGCGAGATTCGAAGCCCACGGCCGATTGGACCATGACCGTTGCCGGGGTCGAGCAGAAGCCCATGCCGAAGCCGATGATCGCCATGATGCCGATCCAGTACCAGTACGGCGATGCCGCGCCGAGCGTGGCCAGCCAGACCGAGCCGCCGAGCACGACGATCGCGCCGAACACGACGCTGGCCTTGATGCCGAGCCGGTACATATAG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACCCGTATGGGTTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 432166-431315 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSOB01000001.1 Cohnella fermenti strain CC-MHH1044 contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 432165 33 100.0 34 ................................. CAGCCGATCCACTGGTTGCCCACGTAGTAATTCA 432098 33 100.0 35 ................................. TCAAGTTCCGCGATCGTGCTGTCTATCCAGTCGAT 432030 33 100.0 35 ................................. CGGCGGTAGATCGTCCGCATGAGCTGAACTTCCCG 431962 33 100.0 36 ................................. GTGCGAACGAGTTCTCGCCCCGGAATCCGTTGGGTC 431893 33 100.0 35 ................................. CTCTAGCCCTTTGTCGTTCGGCTTCAGCCGATCGG 431825 33 100.0 35 ................................. TCTAGGTCGAATGTCTCCTCGTTTTTGATCTCCTC 431757 33 100.0 35 ................................. TCGGATTTGGTTGTTGATGCTACTTCGGCTACGGC 431689 33 100.0 34 ................................. GTGGACGAGATCATCAGCGCCGGCACGGTCAAAA 431622 33 100.0 33 ................................. ATTTTCAAAGTGGATGTTGAGGATGTGACATAC 431556 33 100.0 38 ................................. CCGAAACCGCAACTGGATGTTGCATCGGATGGCACGAC 431485 33 100.0 37 ................................. GCGATTGGCTGCGTGGTCGTTTACGGCGTGATCGCGG 431415 33 100.0 35 ................................. CACTTGTTGGCCGGAGTTTCCGGCGTGTTGCCGCC 431347 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 13 33 100.0 35 GTCGCAACCCGTATGGGTTGCGTGGATTGAAAT # Left flank : ATATCCTACTGAACAGTTACTTCTTACGTGCCCATTTTCATTTTGCGCCCCTCCTTCCCGACGATACACGTCTTCATGCTAACTTGTAATAACAACAGCTACTTATTAGCATAGAAGTCACTGCTTCTCTTATAATCGACGTTGGAATTTGAATGGTTTCAACTTTGTAAATACGCGGAATTCTCTATGGCAAGTGATAGCACGATTTTCTTTATAGCCATACCCGTATTTGGTAAATGAAGGTGCATCCCCCTGTATATCGATGGTAAAATGATTCTTGATCTGCATAAACGCAGGCTGCCATAATAGCGTACTTTCGGTTTAATGCCTTGGTGCGAATGGCAAGCTCACATGGTTTTCCGGGGGGATTCGCACCACGCACCACAACTGGGCTGGCAGGTTTTTGAGGGGATTTTTAGCTTCTCTTTGTGGTCCTTATTTCTCCATTCGCACTTTTGCTGCCCTGAGCCTTACTCTCGCAAGGGCTCATCTGCGGCGCT # Right flank : CCATTAACTACTGCCGGCACGTCCTTGTACATCGTAGGCGAGCTATACAAGTTGAACTAGGAAACTTAACGGACTCATCTGTTTCGATGCCCCACGCAATGTGGACCCAGGTCACGAAATGTAGCCGGAATTTCATGTTTATTCATTCGTTCTGGGCCAGACGAGACCAACGAATGTGAAATTTCACATAGCCGGGCAGTCGATCAAGTACTTCCGGTCCGCAGCGATATGCGGTTTTAACTTACTGGGATAGATTCATTCGTTCAGCTTATATAGTCACGGACCACCCGTTCAACGGGTGGCTTGATTTTGCCCCTATAAGGGGCCTGGTACTGGCAACGCCTAAAGGCGTAGTTTCGCAAGCCATTTTCGCTTGCTGCCCCTAAAGGGGCAGCATTATTGCTTTTTATCTTCGAGTTGATCCGCTTTTACTTGGTTCTGGATGTATTTGCGAATCTCAGCCTCATTTCTCCCTACGGTGTTTACGTAGTATCCCTTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACCCGTATGGGTTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 437039-433511 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSOB01000001.1 Cohnella fermenti strain CC-MHH1044 contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 437038 33 100.0 34 ................................. TGTTATTGCGCGTTCTGTCATGCGCTCTAATGCG 436971 33 100.0 36 ................................. GGTTACGTAGTCGCACCATTTTACGACCGGTCGGCG 436902 33 100.0 38 ................................. TTTGACGGATCAACCGCGACACTTGCCAATGTCCCGGC 436831 33 100.0 35 ................................. AGATAATCATTGTCGTGATCCCAGTGTGCCAGCTC 436763 33 100.0 34 ................................. GTCTCGAGGGCGTTTTTATTTTCACGGAAAGGGA 436696 33 100.0 32 ................................. ACGTCTCGCGAAGGAATTGGACGACGCGCGCG 436631 33 100.0 35 ................................. TCCTTGATATAAAATTCGTACTCACGTAACCACTT G [436630] 436562 33 100.0 34 ................................. TCGCACCCCGACCACATTCCAGGCCCCCGGCCTG 436495 33 100.0 35 ................................. AAACGATCCTCCGCCACCTTTTCCGGAACCTGCGT 436427 33 100.0 34 ................................. TTCGCGTACATTTCGCCGTCTCCTTCGTGACCGT 436360 33 100.0 33 ................................. GCGAATCGTCAGGGAGTGGTGATGATGGCGCAG 436294 33 100.0 34 ................................. GAGTTGGACGCTCTACCGTGGGATGATGAGAGGT 436227 33 100.0 35 ................................. CGCGTCTCCGCAGCATTCGGGACGGCTGGGCCGAT 436159 33 100.0 37 ................................. GCCGAATCGAACATGGGAACGATGGAGTTTTACGACC 436089 33 100.0 35 ................................. TATATTTGGAGATAAGTATTTCCATTTTTATGAGC 436021 33 100.0 34 ................................. GTGGTGTACTACCCGAAACTCGTGACGGACACGA 435954 33 100.0 35 ................................. AGCCTTGCCGTCTTCAGGTGCCCGTACTTCAGCTC 435886 33 100.0 33 ................................. TCCATGGACCAGTCATTCTCGCCACGGACCAAG 435820 33 100.0 34 ................................. CGTTCCTCGGACGAGCTTATGCCAGATGAGATTC 435753 33 100.0 34 ................................. AACAGTATATTGAGAGGGCTAAGGCCAAGGTGTG 435686 33 100.0 35 ................................. TCGAACCAGAATTCGACCGGCGCGGCCGTCTCCTG 435618 33 100.0 35 ................................. CATTTCTGGCGATAGGTAAAGAGGCTCGCCCAACT 435550 33 100.0 36 ................................. TGGACCTCGGTCAACCCTGGGCGCTCAAGCGCTTCG 435481 33 100.0 34 ................................. CTTGCCCTGGATTTTGATGGGCATCCGCTCCAAC 435414 33 100.0 33 ................................. AGCTACTACGGCCTGGAGTGCCGCGTCGCCGTC 435348 33 100.0 34 ................................. GGCGCTGGCGAAGAAATCCCACTATGCTGGTAAC 435281 33 100.0 35 ................................. GACGGCTTCGACGTTGGCCGCCCGTGACGCATCGG 435213 33 100.0 34 ................................. TTTTTCACAACGGAGCATGGCCGATCGCAAATTA 435146 33 100.0 35 ................................. ATCGTGGACGTCGGCATCGGTAAAGCGAACTGGGC 435078 33 100.0 33 ................................. AAACCAGAAAAAGAAGAAGGCGCATCACTCCTC 435012 33 100.0 34 ................................. CACGGATGGCTAATCGCCTCCCATACCCAAATTT 434945 33 100.0 35 ................................. CTTCTGGCCGATCAGTTGCGAGAGGAGATTAATCG 434877 33 100.0 33 ................................. GCAAACCATTCGGCAAGGATGTCTCTGATTTCG 434811 33 100.0 36 ................................. ATCATCTTAAGCGCGAGCTTCGTCATGAGGTACGTC 434742 33 100.0 38 ................................. CTTCCTCGCCATTCGTAATAACACAAACGATCTGCCCA 434671 33 100.0 34 ................................. CTATTCCGGATTCGGCAAGCGGCTCCAGTCGCTC 434604 33 100.0 34 ................................. TTCCATCATCCGGCGCATCCGCTCCTCATCCGAC 434537 33 100.0 34 ................................. GAGGTGAGCCCCGTCACCACGCCGGCATATCCGC 434470 33 100.0 34 ................................. GAGATCCGGTTCCGGGCAACGAATACCATCACCT 434403 33 100.0 35 ................................. CCTCTCCGGCAAATACCGCACGCTGTGCCGCTGTC 434335 33 100.0 34 ................................. ACCTTCCCATAGCGACGTGTCACGCGCTTGACAT 434268 33 100.0 34 ................................. ATGATTGGTTGCCTCCTCATCAAAACATGGTCAT 434201 33 100.0 34 ................................. CAAAAATCGTACTTGGCCAAACAAGTCCAAGTAA 434134 33 100.0 33 ................................. TACCGGGACAATCGCCTGACGATACCGGATGAC 434068 33 100.0 35 ................................. CCAGATGCCAGAACAGCAGCCAAGAAGAAGCCGAA 434000 33 100.0 34 ................................. ATTCACCTACTGCCCGGCGTCAATAACATAACCG 433933 33 100.0 33 ................................. GTCACTGGCTCTGCGCCTGCGGTTGCCTCCGGA 433867 33 100.0 36 ................................. ATCGGCCCACTCGGACCAGATGCGAACGCCGTTGTC 433798 33 100.0 34 ................................. CAGGAGTGGATCGGTTATGGGGCCGCGTATCCGT 433731 33 100.0 33 ................................. CTATAACCGAAGCCTCACCGTGGAGAATCTGGA 433665 33 90.9 25 .............................T.TA CCGATTCCACTTTTCCCCATAACTC Deletion [433608] 433607 33 78.8 31 ..G.......AA.CA..A..T............ CCTAGTTTGATTAAGGTAACCTTATTCATAT 433543 33 81.8 0 A..T..TT.........G..T............ | ========== ====== ====== ====== ================================= ====================================== ================== 53 33 99.1 34 GTCGCAACCCGTATGGGTTGCGTGGATTGAAAT # Left flank : GCCGATGGCCGATCACCCCCCGAATCGTGGAACCCAGATAGGCCGGAAGCCGACCTTCGCTGTCCGCCTCGTAGATGGCATGCAGGGTCAACAGTTGAATATGATCCAACCTAGCGACCTCCTCAGATCAAATCTTTAGTAACATTCTTGAATCCATCGATCGACAAAAGTTGGTAATTTATTCTTTTATTCTACATTCCGTCTGATCTTCCTGCTATTAAAGCGTTATCTTCTCTAACTTGGTGACAACAGGAGGTTAAATTTCTCATTTGGAAAAAGAGGATGTAATCCCCTGTATGCAAATGGTAGAATAGAAGCGCGGCTGATCTCTGGTGCGAATGGCAAGCTCACATGATTTTCCGGGGGGATTCGCACCACGCGCCACGCTTGGGCTGGCGGGTTTTTGATGGGATTTTCAGCTTCTTTTGGAGGTCTTGATTTCGACATTCGCACTTTTGCTGCCCGGAGCCCTACTCCCGCAAGGGCTCGCTACAGGCGCT # Right flank : CTGCAATATTCCAAATTGTAAGCACCGAGTAATCGTGTCACAATCCGCATTTTCTATGTGAATTTTTCTTACAAAAGATACGGTGAGCCCCCTCCCCTTTATAATGCAGCACGTTAATACTCCCTTTATCTTTTCAAATTGAGGTGTGTTATGGATGACAAAGTGAATTACTGGTTAGAGTTGGCTGAATATGATATCGAGACTGCAAAAGCGATGCTAAGTACCGGCAGATACTTATATGTTGGTTTTATTTGCCACCAAGTGATCGAGAAGACTATAAAGGCAGCAATTACAAAACTTACTCAAGAAGCGGCCCCACGTTCACACAATCTGTCCATCCTTGCAAGAACCTCTGGCCTTTACGATAAAATGAGCGAAGAACAGAAAGATCTGTTAGACCTTTTAGAACCACTGAATGTCGAGGCTAGATATCCAACTGATAAGGAACGAATTATGAAATCGTTAACATTGGAAAGGTGCAAAAAAATTCTCAGCCAAAC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACCCGTATGGGTTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 447348-446981 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSOB01000001.1 Cohnella fermenti strain CC-MHH1044 contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 447347 33 97.0 35 ............T.................... AGATCCTCGCTGCTAATATCGACCTTGTCCTTGAT 447279 33 100.0 35 ................................. GACCTCATAACCGAAGTAATTACTAGAGGAATCGC 447211 33 100.0 34 ................................. GATTCGCGGACGGGGCAGGTGTTACGGCGGTGGA 447144 33 100.0 33 ................................. AGCCGATCAAGTGTGGGTTGCACAGCCTCATTC 447078 33 93.9 31 ........................C......G. GAGCACCTCCTTTTGCCATTCCTCTGTCGCT 447014 33 69.7 0 ...AT....A.A..A..A......T...A..GG | T [446988] ========== ====== ====== ====== ================================= =================================== ================== 6 33 93.4 34 GTCGCAACCCGTACGGGTTGCGTGGATTGAAAT # Left flank : GTTTTTGTTCTGAATCCCCATGTGTATGTGCGCGATTATCGAATCGTTAAACGGTTTATTCTGTCCCGAACCGGCATCCGTCCATGGAATTACAAGCAATCTCTCAGCAACCTGCGGAAAATGTTAGTAGAGTGGAATCATCGGTATGATGTGCAACAAGTTATTGATCTCGTTAAACAGTACCGCCAAACTCCTCACATCGTACGAAGCAGGCGCGACGTCATGAATGTATTAGCTGATGAATTCCCTGCATGTCGATGTTAAAATGAATCTGAACCTGGATGAGCGGCGGCTCCGATAATATCGGACTTTCGGTCCAAAGCCTCGTCTTGGTGCGAATGGCAAGCTCACATGGTTTTCCGGGGAGATTCGCACCTCGCGCCACAACTGGGCTGGCGGGTTTTTGAGGGAATTTTTAGCTGCTCTTGGAGGGCTTTCTTTCTTCATTCGCACTTTTGCTGCCCTGAGCCTTACTCTCGCAAGGGCTCATCTGCGTCGCT # Right flank : GAGCATAACTGAGAATCTCATATAGCGCACCCTTAAATCATATCCCCTTCCTTATGACAAGCAGAAAAAAAGCCGTATCAGCCAACGGCTGGCACGGCTTCTTTCTTGCCCGTCTCCTTCACCTTTCTTTGTTCACCGAATCCGGAGCATCTTCCTGAATGCGATGCAGTACATCTTTGAATTCGCTGCGATGTGTTTTTTCTATTCTGTTCTGTTTAAACCACTGATGAGATGCGGAGTCATTGATTCCTGAACTCGAGGCGTTGTTCTTCGAGTCAATGAAGGGATAAGTTACCCGACTGTGCTTACTACTAGTCCAGTTCGCGATCCGTTGAAGATCTTGCATAGGCTTGGTAAGACTGAGCTTGTTCACCGGCAGCCGATCGGCCTCATAGTCGGTCAACAGCCATTCCCCCGTGACCGGATCAATTGTCCGCACCTTGATCTCTGCAGTCTTGATCCGCACACTTCCGAAGCCAATCGGCTTCCCGCGCCCGATC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACCCGTACGGGTTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 5 449308-448870 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSOB01000001.1 Cohnella fermenti strain CC-MHH1044 contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 449307 33 100.0 33 ................................. TTCGCCGGCACAACCGCCTTAGCAACCGCGACC 449241 33 100.0 35 ................................. TCCAAGAACTTCGTTACATACGACCCCTCGGCCGA 449173 33 100.0 35 ................................. TCGTAGAAGGCCTGGTACTGGTCATCGTTATATTC 449105 33 100.0 37 ................................. TATCAATCTCCGTTGATATATGTGTAACCCATTCTCC 449035 33 100.0 30 ................................. CCTAAGCCGTTCGAATGCGGCCCCGATCGC 448972 33 100.0 37 ................................. ATCAAGTTGGTTGCTCACCCAGGAGCCGGCGCCGCGG 448902 33 97.0 0 ......................C.......... | ========== ====== ====== ====== ================================= ===================================== ================== 7 33 99.6 35 GTCGCAACCCGCATGGGTTGCGTGGATTGAAAT # Left flank : CCTACATAAGCGCTTCCATTTGCTATTGGAGAGGTTAACCGCCGCACAATTTCAAAGAACGCTGGTGACTTCGTTGCTGGGAGAGATCACATTAGATGTTGCGCTGCAACGATTCGTATGGCACGGCCAGCATCACACCGCGCAGATTGAGAACTTTTTGCTCAGCAAGTCCCTCTAGCTTAAGTGGGCAAATTCTGATATATAATTTGTTTTATAGCCATTCCCGAATTTAGTAAAAGAGGATTCATTATCCTGTATAACGATGGTAAAATGGTTCTGGATCTGCATAAACGCAGGCTGCGATAATAGCGTACTTTCGGTTTATTGCCTTGGTGCGAATGGCAAGCTCACATGGTTTTCCGGGGGGATTCGCACCACGCGCCACAACTGGGCTGGCGGGTTTTTGAGGGGATTTTTAGCTTCTCTTGGAGGTCTTTATTTCTCCATTCGCACTTTTGCTGCCCTGAGCCTTACTCCCGCAAGGGCTCGCTACAGGCGCT # Right flank : ATCAGTCCATTTCCGGCATCAACATTGGTAACATAGTCGCCCCCAATACGGGGCGTGGATTGAAATAGTGCTTGCTGCAACGCGAGACATCCGTCTTGGAGTTCTAGCTCAGCTTGAACCAAGGAGGCCCACAAAATGAGAATCGCGTTCGTTGTCTTTAACGGCATTACGTTCTTGGATTTTATCGGATTCTACGATGTGATCTACAGGCTTAATCTGTTCGAGGAAACGAAGGGAACCACTTGGGATATCTGCGGCTTATCGGAAGAAGTATCGGATGAGCTTGGATTAGCGATCAAGGTGAATAAAATCCACCCGGATCTCTCCGAGTACGATATGGTTTATGTTCCGGGAGGAAAGGGAACAAGAAGGCTGCGATTCGACGAAGAATTCGTGTCATGGCTGAGAACAGCCGAACGTGTCCCGTATAAAGTGTCCGTCTGCACGGGGGCGCTTCTTCTTGGAGCAGCCGGTATGCTAAGAGAAAAGCATGCAACAAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACCCGCATGGGTTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 451316-451081 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSOB01000001.1 Cohnella fermenti strain CC-MHH1044 contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 451315 33 100.0 34 ................................. CAGTTGTCGTAGCTCGGAATTCAGGGTCGCGGGT 451248 33 100.0 34 ................................. AATAAGCAAGTCGCAACATTGGAATCCGCGAATC 451181 33 100.0 35 ................................. TTCAGCGTTTCAGTTTTGCCGAGGCCGGGATCGCT 451113 33 75.8 0 A.....GT....GA..AC.....A......... | ========== ====== ====== ====== ================================= =================================== ================== 4 33 94.0 35 GTCGCAACCTGCACGGGTTGCGTGGATTGAAAT # Left flank : GTACGAAGCTTGGAAGTCTGCTAGATCGTTACTCCCCATAATACTTTCCCTAACGGGACAATCTTAAATGGACAACTTCGATGATGCGCAGCAACATAGAAGCAAGCATTATATGGACAGCGTAACCTTAAGATTGTAAGCCACTTCAGTAGCAATCAAGTTCGTCCTATGATAAGACGTTACTCCACGGCAAGAAAGAGTCCGGATTTCATTATAGCTATACTCGTATTTGGCAGAAGAGAATGTATTCCCCTGTATGTCGATGGTAAAATGGAAATGTGTCTGATAGTACGGAGGCTGCGATAATAGCATACTTTCGGTCCAATGCCTTGGTGCGAATGGCAAGCTCACATGGTTTTCTGGGGGGATTCGCACCACGCACCACAACTGGGCTGGCAGGTTTTTGAGGGAAATTTTAGCTTCTCTTGTAGGTCCTTCTTTCTCCATTCGCACTTTTGCTGCCATTAGCCTTACTCTCGCAAGGGTTCGCTATAGGCGTC # Right flank : GCAGACCATTTTCCTAACAAATACTTAGTCGAACTTCCTGCAAGAACACAAAGGAGCAAAGAAGAATGGAAATTCAATTTAGACTTTTTGATCCTAATCATGATATTATTCCCTACGATCTATTACTACTTGCAGATCCGTCAAAGCAATTAATAGATGATTATTTTGCTCGCGGAATTTGCTTTTTGGCGTTCGTAAAGGAAGAACTGATTGGAGAATTTGTATTAATTCATACACACCCCATGACCTATGAGATCGTTAATATCGCTGTTAGGGAAGAATACCAAGGCAAAGGTATTGGAAAGCAGTTATTGCAAATTGCAATCGAAACAGCTCAAAAGCTAAATGCTAATGCAATTGAAATTGGGACGGGCAATTCAAGTCTGCAACAATTAAAGCTATATCAGAAAAGCGGGTTTAGAATAATAGGTATAGATCATGAATTCTTTATAAGGAATTATGAAGAAGAAATATATGAAGACGGAATTCAATGCCGGGAC # Questionable array : NO Score: 8.56 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACCTGCACGGGTTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 7 453637-453268 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSOB01000001.1 Cohnella fermenti strain CC-MHH1044 contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 453636 33 93.9 34 ........CT....................... ACGTTGTTCCTCCTTTCAAACAGTTCTTGAATTC 453569 33 93.9 34 ........CT....................... CTGCAGCTCGGCAAGCTCGATCTCCTCCTTGAGC 453502 33 97.0 35 .......T......................... GTTTACTTGCGGGATGTTGCTCCTGCATTCCTGCG 453434 33 97.0 35 .......T......................... TCCGCCTCATGCAAGTAGTCATTCCACCACTCAGA 453366 33 100.0 33 ................................. GTCTCCAGGTCGTCGATGATCCGCTGGACCGTA 453300 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 97.0 34 GTCGCAGCTCGCGCGGGCTGCGTGGATTGAAAT # Left flank : AGATCTCCCCATTCCACGTTATAATTATAACGTGTAATGGCTAAGATTGGCAAGCCATAAATAGCAAAAAACCGCGATATTACGCGGATTTTGCGAAATCCACGTTATAATATCGCGGGGATTCAGGCTGAAAAACG # Right flank : GCAGATTATTTTCGTGGATATAATAGTTATTAGAAATCGCTTAAAACCATAGGGAGTGATTAAAATGAGTGAATTTTCGAACGATTTATCAATCAATTTATTCAATCCTCTATTTGACAATCCCAAAATAATACCTCACGCAACAGGTGTATATTGCATCACGACGAATTCAATAAATCAATTACCTTCCCCAATGCAATCGCTAAATTATTCATATCTTAATAGTCGCCCTGTAATTTATGTTGGAATTTCCAATAGAAGCTTAAGGACTAGAGATTATAGAAGTCATTTTAATGGAAATGCAAGAGGCTCTACACTTCGCAAGAGCCTGGGCTCTCTATTTGGATTGGAAAGAATTCAATCCAATAATGATATTGGAACGTCTAAATATAAATTCTCAAAAGCTGACGAATTGAAATTATCCGACTGGATGAAAGAAAATATTAATCTCCATTTTTTTGTTCATCCTGAACCTAGTCTAATAGAAAAGGAGGTAATTG # Questionable array : NO Score: 8.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCTCGCGCGGGCTGCGTGGATTGAAAT # Alternate repeat : GTCGCAGTTCGCGCGGGCTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 220681-221722 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSOB01000004.1 Cohnella fermenti strain CC-MHH1044 contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 220681 33 97.0 33 ....T............................ CAATTACGCGAGGGAGAACTTCTAGCAGTCCAA 220747 33 100.0 34 ................................. TACCCTCCGGCGATGGAATGTCCTCGCCGATATG 220814 33 100.0 34 ................................. CGGATCTTGCCGGTGAAGGACTTCAGGATCGAAC 220881 33 100.0 36 ................................. GAAGATCGCGAAACTCGAGAAGGGAGAGAACATCTC 220950 33 100.0 35 ................................. CACGTGAAACAATCCGTAGGAATTGCTCAGGACTG 221018 33 100.0 35 ................................. CATTCGAGCTGTTGGGCCTTGCTGTAAGGGATACC 221086 33 100.0 33 ................................. CGGTTACGGACGTGATCTTGACTGGGGTTGGTC 221152 33 100.0 34 ................................. CGCGTGGTAGACGAGGCTGTCGAGTCGGCGGACC 221219 33 100.0 34 ................................. GGGAGATGCTCTCCAGGATGCGGAACTTGTTGGA 221286 33 100.0 37 ................................. GATTTTCGGGATAATGCTTACTTCGAGAGCTTCGCAA 221356 33 100.0 33 ................................. TCTATCCTTGGATCGTTAGGCATGATCGGCCTC 221422 33 100.0 34 ................................. GGCCTCGGAGTCGTCCGGGCAATCAAAGTCTCGG 221489 33 100.0 34 ................................. TCCTTTTCTAGCTTCTCTTGCAGCTGTTCGTTCT 221556 33 100.0 34 ................................. CAATCTTCTTCGGCAGCATGCCGTGGCGTAGCGC 221623 33 100.0 34 ................................. GTGGGTGTCCCAGTTGAGCTCTCCAAGCACCGCC 221690 33 87.9 0 ..........A...............C...GT. | ========== ====== ====== ====== ================================= ===================================== ================== 16 33 99.1 34 GTCGCATCCCGTGAGGGGTGCGTGGATTGAAAT # Left flank : TGTATATGAAAAACCACATATATTGCGCGAGGCTCGCCGGGTCGAGCGAGTTCGAAGCCCCCCTTCATCTCGCTGGCAGATCACGAATATGAAAAACCACATTCAATCCCTCGGCAAACGGCTCCCAATGACCGTTTTATGCTAAAAACCACATATATTCGCCGCTTGTCCACCCCCGCCGACTATTTTTATGCTAAAAACCACATACATTCCGCCAAAAAGGGCCTACAGCAGGGATTGTATATGAAAAACCACATATAATTCGTGAGAGTGAGATCAAGTTATCCTCGCTGATAGTCCATAGAAGTTCCTGATTCGACTTATTTGATGGTGCGAATGGGAAGCTCACATGATTTTCCCGGGGGATTCGCACCTCGGAATGATGCTGGAAATGATTGTTTAGTATTGAATATGTGTGGTAATCTGTGGATGAGTGTTTGAATAGTCGCGATTAGTGGTCATGTGTGGAGAAAAGTTACTCCTTGCGGCCTCGAATCGCT # Right flank : TGAGATCAGGGGGAAGGAGGCGATGTGATGCATGAAAAGTTCGCACCAACTCTGATTGATTCCGCGTGAATGAGGTGATTCCAATATGCTTAAAGACGATGTTAAGCAAATGATTGATAAGCTTCCTGAGGATTGTTCAATTGAAGATATCCAGTATACTCTTTATGTACGATCTAAAATTGAAAAGGGGCAAAAAGATATTGAGGAAGGGCACTTGCTGATGAATGATGAAGTTAAAGCGAGGATGGACAAGTGGCTGAAAAAGAACAATCAATAATATGGACAGTAACAGCTTATAGAGATTTGCAGAGCATTGTTGAATTTATCTCGCAAGATTCGATTTATTATGGCATGGTATTTTACGATGATATTATGAATAAAGTCGATATCCTTCTTGAATTCCCGCATTGAGGCAGAATTGTTCCAGAGATGGGCGATCCTAATTTGCGGGAAGTTTTTGTTCATAGGTAAAGGCTGATGTATCAGATACATAACGATAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTGAGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 223220-225443 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSOB01000004.1 Cohnella fermenti strain CC-MHH1044 contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================== ================== 223220 32 100.0 34 ................................ CTGTGTGACTTTCAATCTCTCTACGACAACGGTA 223286 32 100.0 34 ................................ TCTTATTGCCTACGGCTTCGGCAAGCTCGGAGAG 223352 32 100.0 35 ................................ TCGGATGGGTGGGCAGCTTTTTCACCAACTTGTTC 223419 32 100.0 34 ................................ TGCCAATACTGCTCCAGGAAGTCAATTAAGGATT 223485 32 100.0 37 ................................ TCGAGTCTCGCCTTCGCTGCCGCGAAGAGTGTTTCCG 223554 32 100.0 33 ................................ TCTACGCGTCTCACACACGCGATGAGAGATCAA 223619 32 100.0 35 ................................ TTGATCAGATCGTCGATCATGAGGATCGTCGCGCC 223686 32 96.9 33 ...................T............ CTTCAACGTCTGCGCAACCAACGCTATCATCGC 223751 32 100.0 34 ................................ CACAATGAGCACGTCCAGCCGGAGCTCAGAAAGA 223817 32 100.0 35 ................................ TGTTAAACCGTTATTTTAGATGTCGACCTCTCGAC 223884 32 100.0 34 ................................ ATTTTGTTTCACACTCCATTACATAATGTATCTT 223950 32 100.0 33 ................................ TTTTCCCTGATCAGTCCCACGGCATCTCCCTCA 224015 32 100.0 33 ................................ GCCAAGAAGCTGACCGGCGTGGACAATCTGAAC 224080 32 100.0 34 ................................ CTGTGACTCCTTGGGCGTACCTGCCTGCGCCGTA 224146 32 100.0 33 ................................ AATTGGCTGTCCATGAGATCGTATCTCGCTCGA 224211 32 100.0 34 ................................ TTCGGCGGCTTCGAAGACTCGCGGAAGAATCTCG 224277 32 100.0 35 ................................ TGCTGGAAGAGGTGTTTGAGGCTAACGGGGTCATC 224344 32 100.0 32 ................................ GTCGCGTTGAGTGCCCACGAAGAGGATTCGTC 224408 32 100.0 33 ................................ TCCATCGAACTCGTCGGAGCCGAATGGCTCGCA 224473 32 100.0 37 ................................ CTGCAAGAATGCGCGGATATCCTCAGCAATCAGGCGC 224542 32 100.0 34 ................................ GGCTTCGGCCGCCGTGAGGACACTCCCCGACCCG 224608 32 100.0 33 ................................ CCCATCCGGCGGGGTCGACGGGGATATCTGGAT 224673 32 100.0 37 ................................ TATCCCAATCCACGCACCCGGATAACCGGGGCGAATA 224742 32 100.0 34 ................................ AAACATCAACTTGAGTCACTTCATCAAGTGGCTG 224808 32 100.0 33 ................................ ATAAAAATGTTAATTTTTGTCTCAGTTATCTCA 224873 32 100.0 34 ................................ AATAAATGCAAAGGTCTAGTTTTTCCGATATCCC 224939 32 100.0 33 ................................ ATATCCGTGGCTGGCACAGCGCCCATCAAGACA 225004 32 100.0 34 ................................ TCGACTGTCGCGATTTTTGACTCCATGATGACGA 225070 32 100.0 34 ................................ GAGGTGAACTCGACGCCGTTGCGACGAATGCGTA 225136 32 100.0 35 ................................ AAAATGCGCCCCGTTGCGTCGCCCATGTAGAAGTC 225203 32 100.0 34 ................................ GCTGACGCTCAACGACAGCCGCCTGGACGGATCG 225269 32 100.0 33 ................................ TGGACAGTCAGCGTAGCAAAGGTCAGGCAACCG 225334 32 87.5 46 ..........C..C.......C.C........ AGGGAAGTGGCCGACAGTGGCCGACATTCAGACGGCGGCGATGCTC 225412 32 68.8 0 ....T..C.......GGCA.A....A.AG... | ========== ====== ====== ====== ================================ ============================================== ================== 34 32 98.6 34 GTCGCATTCCTCGTGAATGCGTGGATTGAAAT # Left flank : GCTTATAGAGACTTGCAGGACATTGTTGGATCTATCTCGCAAGATTTGATTTATTATGGGCTGGCACTTTACGATGAACTATGAATAAAGGTAGGCACCCTTCTTGGCTTCCCGTATCGGGGTAGAATTGAGATGAACGATCCTAATATGCAGGAAGTTTTTGTTAGTAGATGCAGACTAAAGTCGAGATTGTTTGCGCATTGTGCTGCTTCCTTCTCTTTGGAAGAAAAGTGGGGATTTTTTACTCTGAACATCCAATGGTTAATAAACTTGGGTCGATTTATGGTGCTATATTCAATTAGAAACGGCGAGGGAAATACGGAACTTTTTGGTGCGAATGGGAAGCTCACATGATTTCCCTGGGAGATTCGCACCTTAAAATGATTATGGAAATGATTGTTTGGTATTGAATGCTTGTGGTAATCTGTGATTGAGTGCTTGAATATTTGTGATTAGTCGCTTAGAGAAGGAAAGTAGCCTTCTTCCGGCTTCAAATCGCT # Right flank : TCGAGAAGTTCTATCCTGGAGGGGGCTTTTCGTCGCGTCCGCTTGCGCGTCGCATCCAAAGGATGTGGTTTGAAGTTGATGGCGGGCTGAGGTAACTTGCATCACCTTTCTTGGTTTTACGCATTGCGCCTCCTTCTTCGGAAGAGAGGCGCAAATTTTTTTGCTCCGAACATCCATTCGCTGACAACCTTGTGCCGATTTGGGGTGTTATATTAAGTAGAAACGTCGACAAGGAGGTCGAAAATGGTCTACATAGCACACATAAGAGAGAGCGACGGGGGAGAGCAGACGGTTAAGGAACATTCGCTGGGCGTTAAGCGTCTGGCTGAGCGATCGGGCAGCAAGCTGGGCATTCCGCATGTCACCGGTCTCGCCGGTCTGCTCCACGATCTGGGCAAGTATTCGGACGAGTTTCAAGAGTATTTGCATGAAGCGGTAAGGAATCCCGATTCGCCTCCCAAGCGGGGAAGTGTCGACCATTCAACGGCCGGCGGGGTGCT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTCCTCGTGAATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 3 234492-235397 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSOB01000004.1 Cohnella fermenti strain CC-MHH1044 contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 234492 33 100.0 34 ................................. TTCGACGTGTATTCGGCCAGGTCGAGCATGGGAT 234559 33 100.0 34 ................................. AGCCTGCGCTGGACCGTTTCGTATTGCTCGTCAT 234626 33 100.0 34 ................................. CCATCGATTAGCCTATCCAGCAGGAGGTCGTATC 234693 33 100.0 34 ................................. CTTCTGCTGTTCCGGCTCCGGCTGCCCTTGTACC 234760 33 100.0 33 ................................. AGATTGGTGAACTTCCTCTCCGCCTTTGGGTAC 234826 33 100.0 34 ................................. TGCATTTCGTCCCTCCCCCCTATGGTTGTATTTG 234893 33 100.0 34 ................................. GCGATTCCGCGATATTGCAGAGCGGGGGCTCTGC 234960 33 100.0 34 ................................. ATCCCTCCTGATACCCCCTCATCTGCTGTTGTTG 235027 33 100.0 34 ................................. GTTTAGGAGAATCGCGAATTGAGATGTAATAAAC 235094 33 100.0 34 ................................. GCACGATCAATATAGGACTGCCCGCCGAGGCCGT 235161 33 97.0 36 ..................C.............. ATTGACCTCGTTAATAAACTGGACGTCCGGCTGATC 235230 33 100.0 36 ................................. ACGACCCACGCTAGCAGCAGCGTGGACCCAGAACGT 235299 33 100.0 34 ................................. GTATCGTCATAAAAAATCCCACGGCCAACCCCTG 235366 32 97.0 0 ..........................-...... | ========== ====== ====== ====== ================================= ==================================== ================== 14 33 99.6 34 GTCGCTCCTCGCGAGAGGAGCGTGGATTGAAAT # Left flank : ACGTATGACGTCAGCACAGTGACGAGCGCGGGGAGAAGCCGCTTGCGTCAGGTGTCGAAGGCATGCCTGAATTGCGGCCAGCGGGTGCAGAACTCGGTGTTCGAATGTATCGTTGATGCCACTCAGTTCAAGAAGCTCAAGCTGGAGCTTCTGAGCCTCATCGACGAGGAAGAAGACAGTCTTCGATTCTACCAACTCGGGAACAATTATAAGAGCAAGGTAGAGCATGTCGGCATTAAGGCGGCGTTGGACCTGGAGGGACCTTTGATTTTGTGAAAATGGGCTCCAGCGAGCAAGGGAGAACAACGGTGGTGGCAGGTGGCTTTTATTGGTGCGAATGCCAAGCTCACATGATTTTGCCGGGGGTTTCGCACCAGGAAAATGAGGCGAAATTGTTTGTTTGCGATTGAATCGATTTGTAAATCTGTGTTTGTATGTTTGAATGTCTGCGATTCAGTTTCTTGCGAGGGCAAAAAGGCCTCCTAAGGCTTCGAATCGCC # Right flank : TTTCCACTGACCACTTACTGACATGAGCCCTCTGGCGGCATTAGGTCTCTTCTCCCTTTCGTTCAGGATAAGAAGGTGCAAGGGAATGGGCTGTCCTACGACCCAAGGGCGTGACCGGCAAGCGGAGGTTCCTGATCCAAGGGGAGAAGAGGCATAAGGGTTCAGAAGGGGGATAACGACAGCGACTGTACGAACCATAATATGGAAATAAATGCGCCTACTCGCCAACTCACCAACCTGCAGACCGCGTCGGGACGGTGCTAGACGGTGGTGGGACTTTTCTGTCTAAATCCGGTACAGACCGCTATTAGCGCCAATTGTATGTGAAAAACCGCATAGATTGGGCGAGACGAGGCAGCGAGTGAAGGCAGCAAGTGAAGCGAGCTTGAAGGAGCCTCTGGCTCGTAACTAAGCAAGAGAGCTCCTCGGAATGGCGGTTTATCGTTGAAGGTCTGCCGTCGGGCAGGTGCGTTCGTTGCCCGGTCGTTGCCCGTTCGGGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGCGAGAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 590-155 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSOB01000080.1 Cohnella fermenti strain CC-MHH1044 contig080, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 589 33 100.0 35 ................................. CTGCTTTGGATTTTGGACATCTTGAGGAGTTTCAG 521 33 100.0 34 ................................. CTTTCTTCCGTTTCGTCCCTTCGGCACTTGTGTC 454 33 100.0 35 ................................. TTCAATCCCATCACCCTCCATCATGTACCATTTAC 386 33 90.9 33 .......CCT....................... GATATTCTCGATCAATGCGTCCTGTACCGGCCA 320 33 90.9 34 .......CCT....................... TTGATCTTGATCGTCGCGACGATGGCCTCTTGCG 253 33 90.9 33 .......CCT....................... TTTATAAGAACGCATCTGCACAAAGCTCGTGAA 187 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 7 33 96.1 34 GTCGCAGTTCGCGCGGGCTGCGTGGATTGAAAT # Left flank : GAGCGGCGTCAAGATCACCGCGGGCGACTTCTCCCTCTCCGGCATGGGCCTTGCCACCGTCGTCGCCATCTTGCTGAGCCTGCTGTTCAAGCTCTTCGAGATCACCGGCCTGTCGAACGACAAGGGTGCCGAGGGGCATTGAGAACGAATCCGGCAAGAATTGTATCTGGCAAGCGTACTGGAATTCCCGCGAACAAGCGTCCTTCGGGGCGCTTGTTTTTTCTTGTTTGATGCATACTTGGAAAATAGTGCTGAATTCCCGTGCGGGGAGATGGTAGAATAGGAGGAGATTCGGCTGTCCGTGAAGGACGCATTCGCCAGCCATGCCGCCGGTGCGAATGGGAAGCTCACATGAATTCCCCGGGAGATTCGCACCTCGCGCTGCGCTTGGGCTCTCAGGTTTATGCGGGGAATTTAGGCGTCGCTTCGACGGCCTGAATTCGCCATTCGCACTTTGGCCCCTCGGAGCCCTTGCGGGGCAAGGGCTCGCAGGCGGCGCT # Right flank : TTTGTGGCGAAGATCGCGCGAGAGCTGAAACCTAAATCCCCGGCCAAATTATAACGAGGTCGGGGGGGCTATTTCTAGCGCTTCATAGATTTCCAGCTGGCGCTTGGTGATCTCCCCAAATCGCAAGTCGTGGCCTGACCGTTCGTAACATTCGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTTCGCGCGGGCTGCGTGGATTGAAAT # Alternate repeat : GTCGCAGCCTGCGCGGGCTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : NA //