Array 1 52338-50417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODE01000009.1 Streptomyces sp. NRRL S-515 contig9.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 52337 28 100.0 33 ............................ CGAATCGCGGACATAGCCCACCCCCCGTGAGAT 52276 28 100.0 33 ............................ CGAACTCCGGGACGGGTGGCTCGGAACCGTCCA 52215 28 100.0 33 ............................ CGACGTGTACGTCCCAGTCGAGGCCGCAGGGAT 52154 28 100.0 33 ............................ CTCGCCGCTACGACGCTTCGCGGCGACCTCGAC 52093 28 100.0 33 ............................ CTCGACGCCATCGAAGGCGCCCCCGAGTGGACC 52032 28 100.0 33 ............................ CGAACTCCGAGACGGATGGCTCGGCACCGTCCA 51971 28 100.0 33 ............................ CTTCGTGACGGGCGTGATCGTCTTCGCCATCAC 51910 28 100.0 33 ............................ CGCCACGCAGCCTCCGGCCATGGGCACCACGCA 51849 28 100.0 33 ............................ CAGGTGCGAAGCCTGGCTGTACGCCATGAGCGG 51788 28 100.0 33 ............................ CTTCCCGTCGGACGTCTCCATGTACTGGGACAG 51727 28 100.0 33 ............................ CCGAAGATGACGAGATACGCCGCCACGGCCGCG 51666 28 100.0 33 ............................ CCCTCACGATCCTCACCAACGATGTGGCCCCGG 51605 28 100.0 33 ............................ CCGGGCGATCTCCCCGAGAGAGAACCCGGCATC 51544 28 100.0 34 ............................ CTGCGCCCACGGAACGTGCGGGACCTCACGCGGC 51482 28 100.0 33 ............................ CCGAGAGGACGACATCAGGAAGAGGGCATCCGA 51421 28 100.0 34 ............................ CCAGGCGGCTTCGTCTTCGGTAAGCTCAACAGGC 51359 28 100.0 33 ............................ CAATCTGATTACGCGGTCTTGAACAGGGGCGGC 51298 28 100.0 33 ............................ CGCGCCATGGCGGCGGAGCTGAACTACTGGAAG 51237 28 100.0 33 ............................ CCGGCGGGCCGAGCGCCGTGAAAACCGGCGCAA 51176 28 100.0 33 ............................ CGGGACGTGGGCTGTGATCACGTTCGATACGGA 51115 28 100.0 33 ............................ CGCGGTCACGATCGACGGAGCCGGGTCGGAGAC 51054 28 100.0 33 ............................ CGAAGGCGCCCGCCAGAAGCGCGACGAGCTCAT 50993 28 100.0 33 ............................ TCCCGTCCACGTGGTTGAGCGCGCCGACGAACA 50932 28 96.4 33 ..C......................... CAGGACGGACAGCTATGAGTAACCGTATCCGGC 50871 28 100.0 33 ............................ CGCGGCGGCCTCCGGCGACAGGGCATGGTCCGC 50810 28 96.4 33 .............T.............. CGACGCCGACCCGCTGGTTGCGGAGTGGCTGCT 50749 28 100.0 33 ............................ CGCGAAGGGACCCTGGGGCCCGGTCCACGGCGT 50688 28 100.0 33 ............................ TCGAGACCTTCGGGTCGCCGCCGTCGTTCTCAC 50627 28 96.4 33 .....................A...... CTTCGACTGTGCGAGCCAGATGCGACGAGGAGG 50566 28 96.4 33 .....................A...... CTGATGAGCGGCGCGAAGCGGTCCGCGTCGGCC 50505 28 96.4 33 .....................A...... CGCGGTGCGGTGCTTCCAGGCCTCGGGGACGTC 50444 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================== ================== 32 28 99.3 33 CTGCTCCCCGCGCCTGCGGGGGTGAACC # Left flank : GTTGTAGTGGATTATCCAGATTTTGGACTCAAGCAAGCACAGTTCGATGTGACCCGAAGGCAGGCCTGACGCACCTTTCTCCATCCCCGCAGCGGCGGGGAGCAGTGGTCGAGCACAGATGGACTCATGCACGCACAGGGATCATCCCTGCAGAGCAGGGAGCAAAGCCGCCCGCACCGTCGAGTGAACAGGTGGGCACCGTAGTGGACGGTAGTTGCCAGCCGCAGACACTCGGACAAAGCCCTGCCGGCCTTGGCGTCGAGTCGCCGTGATGAACCTGTCGGCTGTAGCGACTTCTGGTGCTGTGCGCTCGCCGCTACCCACGCCGGCAATCGAACCCACGTGTAGCCCCAGTGTGCACCCACCAGCCCCCGCTGGTCACCGAATTGTTCGAGGGAGCCAGCCCCATCTCGCGGACAATCCCTTTGGGTGGATTGTCCGACTCTCGTGAAGTGCCCCCAAGCTGCTTGTGACCGCCCTAGAGTGCCAGGTCAGCCAGT # Right flank : CCAGCGCGGGAGGGGTGTCAGGGGTGCTGACATGGGCTTTGGGGTCAGCACGGAACCAGCACGGGAGTCAGCACCGCACCGTCAAAACGGGCCGCAAGGGGCATATCTGACGAGCCCTTGTCGGAGCCGTCAGACGCGCCTGCCACAGGCCCGGCAGGGTCCCTTGTGTTGGTTGAGGGCATGTTGAGGCCCCCAACTGTGGTGGTCCGCCACATACGTCACCGACCTGCGGGCTTCTACGGTGTGGCCACACGGAACGTCCCCGCAGCCCCCCGGAAGTGGTGCACATGACCTCCCCCGCCTCGGCCCCCGCACCGACTCCGTCCGGCATCCGGAGAATCGTCGCTGCCAGCCTGATCGGCACCACCATCGAGTGGTACGACTTCTTCCTCTACGGGTCGGCCGCCGCACTCGTCTTCAACGAGCTGTTCTTTCCCGGCAGCGAGCCCCTGGTCGGTACCCTCCTCGCCTTCCTGACCTACGCGATCGGCTTCGCCGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 62635-64552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODE01000009.1 Streptomyces sp. NRRL S-515 contig9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62635 29 100.0 32 ............................. GCCACATCTCGTCCGTCAGCAGGTAGGGGTCA 62696 29 100.0 32 ............................. GGGGTACCGGCCCGAGCAAGCACCTCGATCTG 62757 29 100.0 32 ............................. CCCTCTGTAAGCAACAGCAGACGGAGGGCAGA 62818 29 100.0 32 ............................. GCGTACGTCGGCTGTACGGACTCGGGCAGCTG 62879 29 100.0 32 ............................. ACGCCGAGCGACCGGTTGTCGAGCCGCCACCG 62940 29 100.0 32 ............................. AGACTTACGATCTATGGGTGAGCGACGAGAAC 63001 29 100.0 32 ............................. CACCAGTGATCTTCACTGGGCGGGGTGTCTCG 63062 29 100.0 32 ............................. GCCACCGTCCACGCACTCTCGGAGTGCACGGT 63123 29 100.0 32 ............................. TCCCCTGGCGCCCACCGCGGATGGGAGAAGAG 63184 29 100.0 32 ............................. TCTCCGCCGAGGTTGGCGTTCGGGTCCGAGTC 63245 29 100.0 32 ............................. CAGCAGGATCAGGTGCTCGGGCAGATCACCCG 63306 29 100.0 32 ............................. CACAGGATGGACGCTGGGCGCCTTGGGAGGCT 63367 29 100.0 32 ............................. CAAGGCCGCAACGTCGTGGTGCTGGGACCCGG 63428 29 100.0 32 ............................. GACCAGGCGTCCCCGCTGACGCTGATCGCGGT 63489 29 100.0 32 ............................. ACGGTGCGCGGCACCATCGAATCGTGGACCGG 63550 29 100.0 32 ............................. CAGCGGATCATCCCGGCGCACCGCCGGCTGTA 63611 29 100.0 32 ............................. GCGCACCGACGGAAGAGCAAGGCTGCCGCGGA 63672 29 100.0 32 ............................. CGGCGCGCCAGGCGGTGCTAACCGTTTCCTCC 63733 29 100.0 32 ............................. GCTCGCAGAATTCCCATGAAGTTGCTGAAGGC 63794 29 100.0 32 ............................. GAACGGGCCGGCGATGGCTTGCGCGGTGCTGT 63855 29 100.0 32 ............................. TCCGCTGGTCGGGCGACGTCGAGGGCGAAGTG 63916 29 100.0 32 ............................. GGCGCCGACGAGACCGGTCGGAGCGTGGAACC 63977 29 100.0 32 ............................. TCGACCGGGCTCACGTGAATGCTCATGTGTTC 64038 29 100.0 32 ............................. GTACCTGCAGCACTACGTCGACGCCCCGTGGC 64099 29 100.0 32 ............................. TGCAGGTTCCGCTGGGTGATGTTGGCGTACGT 64160 29 100.0 32 ............................. GTCTGGAAGGAGTCCTTCGAGACTCTGGAGGA 64221 29 100.0 32 ............................. ACCCTGTGGGCGGGCAAGGTCACCGACCTCGC 64282 29 100.0 32 ............................. ATCCTCGCCGGTGACCCGATCCTGCCGGGGGC 64343 29 100.0 32 ............................. TGGCCGCCGTTGTTCTGGTTGGCGCCGACCTG 64404 29 100.0 32 ............................. GAGCTGCGAGACGGATGGCTCGGCACCGTCCA 64465 28 96.6 31 .....................-....... AGTCGACCCCCGCGCGGGGTCCGCACGGGGG 64524 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 CTGCTCCCCGCACCCGCGGGGGTGTTCCC # Left flank : GGTCACCCTCCGCTCCGACCGTGACATCGCCGTACCCGCCGGCCGCAACTACGCGGAGACGGTGACCTGGTGACCGTTATTGTCCTGACGCAGTGTCCCATCGGGCTGCGAGGCTTCCTCACCCGCTGGCTCCTTGAGATCTCACCAGGCGTCTTCATCGGCGGACCCTCGGCACGAATCCGCGAGACGCTATGGGCGGAGGTCCGCCAGTACGCGGGAAACGGCCGGGCACTACTGGCCTACAGCACGGACAACGAGCAGGGCTTCACCTTCGACACACACGACCACAAGTGGGATCCCACCGACCTCGAAGGCGTCACTCTGATCCACCGCCCCAATGACCGCCCCACCGCCACCTCACCGACCACCCGAGGCTGGAGCAAGGCCGCGAAGCGACGACGCTTCGGAAACGGATAGCAGGCCAGACGCCCTAAATGCCCGATTCAAAGAAAGTCAGCCAAAGCTGGGGCCTCCCCCGGTAGAACCCCAGGTCAGTCACT # Right flank : CCGCCTCACCTGGATGATCCGCCCAAGCGCGGGGGGCTCGGCCCACGAGCGAGACCACCTCTTCCACCGCCACCACCAATCTCGACACGCCCGCCAGCTGCTCGGACCGCTGGGACACCAGCGACGACCTTCTCAGTGTCGGCGACAGGCAGCCCTGCCCCCTGGTCTGGGCCCGGCCCACCATCACCCACACCGCTCCCACGACCTTCAGGATCCAGTGGGGGGCGCCCCGGCGGAAAGCCCACACCCTCGCCGTCCCCGAGGACAACGGCTCGACGATCCCGGCAGTGTCAGCGGGCACAACACGCGAACGGCCCACCGTGTACCGGGTTCCGCCACCCAGCTGCCCAGGTGAGACGTCGGCCGCCCGCCTCGCCCACGCAGTGGCCGGCCTGCGCCTGACCGCCTCCGGCGGCACCCCCTGGATGGCACCGCCCTCAGCGTCCTGGCCCGGCGCTTCCTCGCCTGGACCACCACCGGCCACTGGATCTGCCCCATCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //