Array 1 62007-61673 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWO01000026.1 Chromobacterium subtsugae strain MWU3525 contig00026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62006 29 100.0 32 ............................. CGCCGCACGCCGTCGCCGTCTACGTCCTGGAC 61945 29 100.0 32 ............................. ATGTCTACCCTGCAGCTGCGCCGCCTGGTCCA 61884 29 100.0 32 ............................. ATTGCTTGGGCTGCACCGGCCACGGAGTAGTG 61823 29 100.0 32 ............................. CATCAGAGCAAGCCAATCGATGGATTCACTTG 61762 29 100.0 32 ............................. TCTTCCCATCCAACCAACAGATACGCGCCGGA 61701 29 82.8 0 ...................T..C.GT.G. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : TTCCAGAACCCGGCGCCGTCCAGGCTGACCG # Right flank : ACTAAAATTCGGCAAGTTACGCTTTGCACTGGGTGTCCCGCACTCCGCGTACCTCCTACCTACTGTTGCATCTCGCTTAGATATTGCGTCAGCCGCAGCGTCAGGCTGGCGCGGGCGGCGTTGGCTGGCCATACCGCGTACACCCCCAGAGCTTCCACCTGCCACTCCGGCTCGACTTCGCTCAGCCTGCCGGCTGCGATGTCGTCCGCCGCCAGGAAGGCCGGCGGGGTGGCCAGGCCGCAGCCGGCGATGGCCAGCTGGCAGACGGCATCCAGGCTGTTGGCGCGGATGGCTGGCTGGATGGAGAAGCTGTGCGCCTCGCCGGCCGCGTCTAGCAGGGTTTTGTGGTCGGGCCGCATGCGTATGCCCAGCCAGGGCCAGTCGGCCAGCTCTTGCGGATGGCGGGGCGCGGGGCGCGCCGACAGCAAGGCGGGCGCGGCCACCAGCAGGCGCGGCATGTCGAACAGGCGGCGCGATTTTAGCGCGCTGTCCGGCAATTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5-399 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWO01000048.1 Chromobacterium subtsugae strain MWU3525 contig00048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 ............................. GGCGCATTACACCGGCCGCCCGTCAATCATAG 66 29 100.0 32 ............................. CGCCTCGACATCGAGACCAAGCGCAAGGCTGC 127 29 100.0 32 ............................. GAGCTGCTTCTGCAGGCCTCCGCATCCCTGCG 188 29 100.0 32 ............................. CGGATGATCATCGCCGGTGCCATCAACAGCTA 249 29 100.0 32 ............................. TGGCGGGTTCAAACCTCACAGCGCTATACTGA 310 29 100.0 32 ............................. GGTTCGACGCCAGCGAGGACGGCACCGGGCGC 371 29 93.1 0 .........................G..A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : GGTGG # Right flank : ACGGTTTGCAAACGCGATGCCCGGCTTGTTTTTCTGGATGGAATGTCTCGGCTTGTGCCTGCTTGGCAAAATGCCGATAATGATTGAGCAAATTGCCTGATTGGAGATTGCCATGCCCGCACGCGCCGCATTCCGGCCCGACCCCGTTCTCATCCGCCGCGCCACGGTCAGGGAGGGAGAGCGCCGCTCCCGCCAGTCCGACTTGCTGGGCGCGCCGGTGAGCAGCGATTACGACATCGTGAAAGAGGTAGCCAAGGGCTTGGATCCCGGCGTGATCACTCGCCTGACCGATGAGGGGCTGACCCGGCGCGAGCTGGAGTTCGTCATTCCGCCGCGTACGCTGACCCACCGCATCAAAAACGGCGAACGCCTGAGCACCGACGAATCCGAACGCAGCGTGCGGCTGGTCAACCTGCTGCTGCAGGCCGAGCAGCTGCTGGGCGGCAAGGAGGCGGCAACCGCCTGGCTGCGCCAGCCATTGCGCCGTTTCGATGGCCGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10135-10468 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWO01000048.1 Chromobacterium subtsugae strain MWU3525 contig00048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10135 29 100.0 32 ............................. CGGCCGGCTAATTATTGTCAGCAGACGGCTAG 10196 29 100.0 32 ............................. CCACGGACGTTCATTTTTCAGAAACCTTGTAT 10257 29 100.0 32 ............................. GCAACGGCAACGATTCGAATCCCGGTGTTTAC 10318 29 100.0 32 ............................. GATGCTGCGGCGCTGCGGGCCATTTATATGGC 10379 29 100.0 32 ............................. CATGGCTAGTGCCAATGTCGCTACTTCTTTCC 10440 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CGGACATCGAGACGATGCTGGACGCCGGCGGCCTGGACAAGCCAGAGGCGCAGGGCGTGGTGGATGCCGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAAAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTCGGCACTTACAACCGGAAAATCCGCGACTACCTGTGGCAACAGGTGGAGGAGGGGCTGGAAGAAGGCAATGCGGTGATGGCCTGGCAGGCCGTCACCGAGGCAGGCTTCGACTTCGTCACCCTAGGCGCCAACCGGCGGATGCCGGCCGAGTTCGACGGAGCCAAGCTGGTGTCTTTTTGGCCTCCACCCGGGGCGGATGGGGCTGGCGAATAGGATGTTGTCGGCTTGGACGGAATGGGGAGTTGGGTTCTTTAAAAATCGGTAGATTTTTGAGTGGTGTTTTTGTTTTTAAAAATCAATTACTTGTAATTGGT # Right flank : CATAGGGTGCGCTGGTACTTGATTGTAGGTGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 180686-181568 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWO01000010.1 Chromobacterium subtsugae strain MWU3525 contig00010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180686 29 100.0 32 ............................. TCAACCCCTGCAACCTAACAATCCGGAGTGTT 180747 29 100.0 32 ............................. TCAGACATATAAAGAAAAACATTGGAATTGGT 180808 29 100.0 32 ............................. AATCTGCCGGATCAGGCGTTCCCTTTCACGTT 180869 29 100.0 32 ............................. GGTCTCGGTTATTGGGGTTCGCAGACTACCGA 180930 29 100.0 32 ............................. ATTCGGATAATAACTTTTCACATCGATATCAA 180991 29 96.6 32 ......G...................... CCGCCCGCAGCTATTCCGCAGCCGCCCGCAGC 181052 29 100.0 32 ............................. GTTTTTCATCTGAGCGCGGTTTTCTTAGTGAA 181113 29 100.0 32 ............................. CGCCGGCGGCATTGAGCACCAGATTGCGAGTC 181174 29 100.0 32 ............................. ACACCGTGGGGACGTCCTGGCCAACACCCAAA 181235 29 100.0 32 ............................. TCATCAACCACGAAATACGGATAGCCGAAAAT 181296 29 100.0 32 ............................. CGAGGAGGCTAGTCATGCCTGTCTGGCTCGTT 181357 29 100.0 32 ............................. CATCCTGAGTGGCAACGTCCATACTCTGCCTC 181418 29 100.0 32 ............................. GCCAACTAGCTGCTGCATCACGCCGTAGTATT 181479 29 100.0 32 ............................. TCGCCATTTTTCATCGTCGTGCGGCTTGGTCA 181540 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCACGCGAGTGGGGATGAACCG # Left flank : GCGTGCGCGCGCTCCACCGCCTCGCGGATGTCCTTGACGCCGGCGAAAACGGCGGAGAGCGGGATGAACTCGGCATCGAAGCTGGCGGCGAGTATGCGCGCCAGCGTGGTTTTGCCGACGCCTGGCGGCCCCCACAGAATCATCGAATGCGGCTTGCCGGCCGCCACCGCCAGGCTCAGCGGCTTGCCCGGCCCGATCAGGTGCTGCTGGCCGATGACATCGTCCAGCCGCGCGGGGCGCAGCGCTTCGGCGAGCGGCTTCTGGGGTTCGGCGGCGAACAGGTCGGGCATGGCGGGCTTCGGGCGGGATATTGCGGAGCAACAGTATAACAGTTGGCGGCAGGCATGAAAAAAGCGCCAGCCAGGCGTTTTGGGCTTGCATGCTTGCGGGATGGCGGCAGGCTATGGATCTGGGCGATTTGAGCGAAGTATTGTTCCGGAAAAATCGGTAGAATTTGGGAGTGGTTTTTTATCTTTAAAAATCAGTGGATTGAAAATGGT # Right flank : CTGACCCCGACAAAATTGTAGGTTTGATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 402-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWO01000049.1 Chromobacterium subtsugae strain MWU3525 contig00049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 401 29 100.0 32 ............................. GCTGAATATGTGCAATTGGTTTCGGTATCGTC 340 29 100.0 32 ............................. CCCTTGAGCTTCGTCGCCTCGTCGCACACCAC 279 29 100.0 32 ............................. CCCTTGAGCTTCGTCGCCTCGTCGCACACCAC 218 29 100.0 32 ............................. TAACCAACTGGTACTTGGTCATTCATTAGTAG 157 29 100.0 32 ............................. GCCCCCATATCCCCGAAAACGTTGCCATTCGG 96 29 100.0 33 ............................. GCTGCAATCATCAAGATTCAAAACCGAGTAGCA 34 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : TTTTCCAACGCCTACGCCGACAATCTGCTGGCGCAGTGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAAGCCAGGCTGCCGCAATTGCAATGCGCCGACCGCGCCTTCCGCCCGGTTCACCAGCAACTGGCGCTGCAGGCGCTGACCGGCTTCGTCTGGCTGAACGCCGAGCGCACGGCGCAGCAAACCCGCTTCGCCGACGGCAGCCGCTTGAGCGCCAACTTCGGCGCGACGGCGGTGGGCGAGGGCGATCAGGCGCTGCCGCCGCAAAGCCTGAGGCTGGAGCTGGCTGGCCAGCCGCCGCGGCTGCTGCGGGTGGCGGATTGCGGCGGGGGCTGATGCGCGGCGATAATGCCGTTGTCGTTTTGCGGGCGCTGTGCCTGCGGTGACCTCCGCCGCGCTGGCCGCAATTTGGGTACGGAATTCTCGGTAGGATTGGGAAGCGCTTTTTTGTTTTGAAAAATCAGTGAGTTGAAATTGGT # Right flank : GCGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5391-4752 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWO01000049.1 Chromobacterium subtsugae strain MWU3525 contig00049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5390 29 100.0 32 ............................. TCACTCGGGCATGTTTATCTGCGCAGCAATAT 5329 29 100.0 32 ............................. GAGATGAGCTACCCCTGCATTGCCGATTTGGT 5268 29 100.0 32 ............................. CCTTTGGATGTTCCCGATTGGTATTGGGACCA 5207 29 100.0 32 ............................. CCTTTTTGCAACTATTTTTTCTTGTTGCTTTT 5146 29 100.0 32 ............................. CCGCTGTATTGAGCCTGTAGCGCCGCCTGCTC 5085 29 96.6 32 ............................C AGGAACGCCAACGACAAGAACATGGCGTCCAC 5024 29 96.6 32 .........................C... GCGAGCAGCCAATTGAACGGCGCCGTCGACGA 4963 29 96.6 32 .........G................... GAACGAACATGTCCGTCAAAAAAATTGCCGAC 4902 29 96.6 32 ............T................ TGGGGGTCCGGTGTCAGGCCGTAATAGGCGGC 4841 29 100.0 32 ............................. TGGCTGGTGGGGTTGGGGGGAAACAGGCCACT 4780 29 89.7 0 ..............C..........CT.. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.8 32 GTGTTCCCCACGCGAGTGGGGATGAACCG # Left flank : GGCTTAGCTGCT # Right flank : CCTGTATCGAATGCCGGCATGAAAAAAGCGCCCTTGGGGCGCTTTTCGGCATCACGAGCTGAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGTACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGTACCTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACTACGGTGGTCGGCAGTTCTACGGAGATGGCCTTGCCATCGTAGAAGGTGACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAACTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGAACCACCACGTCGAACTTGTCGTCCGCGCGGTATACGGCTTCGCTGCCGGCGCCGGTCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //