Array 1 85343-84704 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFOG01000061.1 Escherichia coli strain JML065 sequence061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85342 29 100.0 32 ............................. ATAAAACAACAGGTGAGTTGGGTTTTGAGTAT 85281 29 100.0 32 ............................. ACAATCAGATCACGATCGATGCCTCGCGTGAG 85220 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 85159 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 85098 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 85037 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 84976 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 84915 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 84854 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 84793 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 84732 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1374-125 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFOG01000123.1 Escherichia coli strain JML065 sequence123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1373 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 1312 29 100.0 32 ............................. CTATCAGTAACAACCTGGTAAATATCGGTTTT 1251 29 100.0 32 ............................. TTTTCGGGGCCATAAATGGCGCTCATTTATGT 1190 29 100.0 32 ............................. GATACTTTATTAGCGAAAGTAATCCTAGCTCT 1129 29 100.0 32 ............................. TTGGGGCTGGGGTTCGGTAATCAGATTATTGA 1068 29 100.0 32 ............................. CGGCACCAGGGCTGAAAGGCGGGGCCGCTAAA 1007 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 946 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATAAGGATAT 885 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 824 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 763 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 702 29 96.6 32 .....T....................... TTTGTTTTGATGATTTATCAGTATATGAATTG 641 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 580 29 96.6 32 A............................ GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 519 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 458 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 397 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 336 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 275 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 214 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 153 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //