Array 1 117576-118262 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDET01000009.1 Pseudomonas protegens strain AU20219 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 117576 28 100.0 32 ............................ TATTCGTCGCCTTCCGTGGGAGTATCGCTCTC 117636 28 100.0 32 ............................ ATAAACTCCCATCTGTGCGTATCGCAGAATCT 117696 28 100.0 32 ............................ ACGGTGAAACTCATCGTGGACGCCTCGACTGC 117756 28 100.0 32 ............................ TCAACCGCAGTAACCCGACCTTTACCGCTGCC 117816 28 100.0 32 ............................ TCCCGGCGCTCGCGGGCCTCTACCACCGCCTT 117876 28 100.0 32 ............................ CACGCCGTGGTTGCGCGTAGCGCTTCCACCCT 117936 28 100.0 32 ............................ TACAAGCCCGACGGGCGCGGCCAGATGAACAT 117996 28 100.0 32 ............................ TGCTGGTCGTCCTCGCCCAGGCGGGAGAACGG 118056 28 100.0 32 ............................ TCGTCCGAAAGGATCTCGGTTTCCATGGGGTT 118116 28 100.0 32 ............................ AGGGCGAGCACGACGGTTTTGTGATCATCACA 118176 28 100.0 32 ............................ TCTCAAACCCCGGGAGGCATTCGAAAGCCACG 118236 27 89.3 0 .............C........-.A... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.1 32 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TCCTGCGGGCACCGACTCGCCCTTCACCGTCCGCCCCGGCATCAGCGCCGAGGAAGCCTTGCTCCACGTTTCCATGCTGCTCAAAGCCGCCGAAGAGGTGTCCGACGAGATCACCGAGCAGGCCAGCGGCGTCGAGCGTGGCCTGATCTGGTCCCTGGTGCATTCGGTGGAAATGGCCCGTGGCGTGGTCGATGCCTTGCTTGATGGCAATCGCCGCTCTCCCAGCTGAACGGCTTGATTTCTGTGGCGAGGGAGCCGCTCCCTCGCTCCACCTTGGTCACTGCGTCACCATCACTTTTCTCACTAGGGCCTCAACCAAATAGGTTCAAAGGCTATAGTCTGAGCCCTGCCGATCGGATGCTTGGGACTGACCCTCTTTTTGGAGGGGGGATAAGCCCCATGTAAAATCAATCACTTACAGATGCTTCTAAAAAGAGGGTCTGGCGGGATGTTTACCTGGTTGTTCTTTTAAATCATGGGGTTACGAAGGAGGTTGTCTA # Right flank : ATCTGGCCCACAAGCATTGAGTAGTAACCGGTGATCTCCAAACTTCGCCAGCAGGTTTGCCCGGCAGTTCTATTTGCACTGGAGCGAGGCAACGATCTGATTTTCCAAAGTGGCATAGACGAACAACCCGACATTGCTTATAACCGCTACCGCTCAATGGACGATGCAGCAGGCGGCTCTCTCTTATGGAAGACATCAGCTCCGCAGATCTAAAAACGATTCTTCATTCCAAGCGCGCCAATATCTATTACCTGCAGCACTGTCGGGTACTGGTCAATGGTGGTCGGGTCGAGTATGTAACCGATGCTGGCAAGCAGTCGCTGTACTGGAATATCCCAATCGCCAATACCACGACCGTGCTACTGGGGACCGGCACGTCAGTCACCCAGGCAGCCATGCGCGAGTTGGCCAAGGCTGGCGTTCTGGTGGGGTTTTGCGGGGGCGGGGGCACGCCGTTGTTCAGCGCCAATGAGATCGATATCGAAGTCGCTTGGTTTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 127290-128397 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDET01000009.1 Pseudomonas protegens strain AU20219 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 127290 28 100.0 32 ............................ GAAGCCGTTACCGTCCCGGAGCCGGAGCCAAC 127350 28 100.0 32 ............................ ACAGCGCCCAGCTTTATGCGGGCGTACTGGCG 127410 28 100.0 32 ............................ TTCGCGCTCGACGCATCGGCAATCAGCTTCAC 127470 28 100.0 32 ............................ AGAGCGCATAACCGCTGACGCCAAGCGCAGCA 127530 28 100.0 32 ............................ TGTCGGCGGCTACCAGCACCACTGATGCCAAC 127590 28 100.0 32 ............................ GGAAGGAAACCTCACCCGGCGCGACCCTCGCC 127650 28 100.0 32 ............................ ACGATGGTCGCCGGGGTTGCGGTCAGGTCGAT 127710 28 100.0 32 ............................ CAGGGTAGCGCCTGCACTTTTTCGCAGTTCCT 127770 28 100.0 32 ............................ TCACCACCGCGACACTCGCCAATGACAATGCG 127830 28 100.0 32 ............................ TGGACCGCAGCGCCGGAGACGGTGCCAGATGC 127890 28 100.0 33 ............................ GAAAAATGTGCCTGCTGGTGCTGGCTCCTACGG 127951 28 100.0 32 ............................ CAGTAGGCTCAGCTCGAAAACAGATGTGTTGG 128011 28 100.0 32 ............................ TCCAGCCGCGACCCTGGTCCGCCGGATAACTT 128071 28 100.0 32 ............................ ACGTCGCCGAAGACAAACTACACGCCGACGCC 128131 28 100.0 32 ............................ TTCTGGCTCACGCCGATTCGGGTAAAGCCCAG 128191 28 100.0 32 ............................ AAGCCAACGCCGCGCAGAACGGGATTTACGTT 128251 28 100.0 32 ............................ GAGTACGCCGTTGATGATGGCAAACAGAGAGC 128311 28 92.9 31 .................C......A... CTCACGGCCTGGGCCACGGCCGTGCGTAGCG 128370 28 78.6 0 CCC....T.......A.C.......... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.5 32 GTTCACTGCCGTGTAGGTAGCTAAGAAA # Left flank : AGCCCTGGACCAATTGCTGGCCATCAATTGGCTGACGGGCATGCGCGACCATGTGCATATCGGCCCGCTATGCCCTGTTCCGGCATCGGTGCAGCATCGCCATGTCTGCCGGGTGCAGGTCGACAGCAACCCCGAACGCCTTCGGCGCCGCCTGATCAAGCGTCATGGGCTTTCCGAGGACGAAGCACGCCGGCGTGTTCCCGATACAGCCGCGAAACGCTGTGACCTGCCTTTTGCTGTCATGCGCAGCCATACCAGCCATCAAGTGTTCCACTTGTTCATCCGCCACGGCCCGCTTCTTGAGCAACCACAAGCAGGAACATTCAACGCTTATGGCTTGAGCTCAAGCGCAACGGTGCCCTGGTTTTAACCCTTTTTTCTGGGCGGGCTGAGCCCTCTTGTAAAATCAATGACTTACAAGTGGCCTCAGAAAAAGGGTATGTGGAGTCTTTGGGCGCCTTTTCTAAGCGCAATCAGATGGTTATGGAAAAAATGCTCTA # Right flank : AACATGCGTGAGCAGCATGCTTAATTCAGGTCACTCCTCGCCACTGTCCTGTCACACCCCCTTCATCCCCACTGTCTAAGGTGTGCTTTTTGACCATTGTCAGGGAGTCACCATGAGCGAGTTCAACCTCGGCCGTCGTCGGATCATGCAAATCGCCGGGGCGGGGCTGTTGATGCCGAGCCTGGCGCCGGCGGTGATCGCTTCGGTCAAGGATCGGCCGCAGCTCACCGACGGGGTGCAGTCCGGGGATCTGCTGGGGGATAAGGCGATGATCTGGAGCCGCAGCGACCGCCCGGCGCGGATGGTGGTGGAGTGGGACACGCGAAGCATGTTCAGCAACCCCCGGCGTTTTGTCTCGCCCCTGGCCGATGCGCGCACGGATTTTACCGCGCGGGTGGAGTTGACCGGGCTGCCGGCCAACCAGGCGATCTTCTATCGGGTGACCTTCGAGGATGCCCAGTCCGGCGTGGCCAGTGAACCCTGGTTCGGCCATTTGCGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //