Array 1 233091-236569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH164965.1 Neisseria sp. GT4A_CT1 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 233091 33 97.0 33 T................................ GCAAATGCCAAAGATGTTAAGCCGATGGCATCG 233157 33 97.0 33 C................................ CTCGTTTTTGTAAACCTTGCCGTCAACGGTAAC 233223 33 100.0 33 ................................. AACAGATTTAATCATTTTCAAACCCCTGAAGAA 233289 33 97.0 33 T................................ ATGTTTGCAGCTTTCTGTTTTAAAACAGGGTCA 233355 33 97.0 33 T................................ TTGAACTTTTGGGAATCAAGGAGGTATTCATAA 233421 33 97.0 32 A................................ TTATAGATGAAGTAGCAGAAAGAGTCGATATA 233486 33 100.0 37 ................................. ACTTTTGAAGATATTCCAAAAGATGCGAATATTTTGG 233556 33 97.0 35 A................................ ATCCTGAATAAACACATAAAAAACAAGGCGCAATG 233624 33 100.0 32 ................................. ACGGGACATCGGGACGCATCCATTCTTCCAAG 233689 33 97.0 34 A................................ CGATGCATCTTATGTGCATATGATGCTTAATGAA 233756 33 100.0 33 ................................. TGCCATGAACGCTTGAAGCTCCGCATTTCTGCG 233822 33 100.0 33 ................................. ATAAAACTCTTTTTCAAGCTGTTTAAAGCTGGT 233888 33 97.0 37 T................................ TGGTGGCAAAGCATACCAACGTTTCTCCCAGCGGCGA 233958 33 97.0 33 C................................ CTATCATTTAAACAAGAATAAAGAGTGGGTAAA 234024 33 97.0 35 C................................ TGATAACTCAAATGCCTGGTCGAATTGATAAACAT 234092 33 100.0 34 ................................. TGCCTCAGAGCGTGGTGGCGATGATTACAGTCAT 234159 33 97.0 32 C................................ ACTATTTGTAACTCTTTTTCACTTTTTAAAAA 234224 33 100.0 33 ................................. TTAAAAAACTTAGCTGATACTGTATTCCGCCAT 234290 33 97.0 33 C................................ CTGAATTATAACGATTTAGCATCATCTCTTTTT 234356 33 97.0 34 C................................ GGTCTCGCGTATGCGCGGAATCGCGCCGATGGCG 234423 33 100.0 33 ................................. CAGTCAATTTGAGTTAGCGCAACAAATCCGCAA 234489 33 97.0 33 A................................ TTTTCATATCAGCACCTATAATATTATAATATT 234555 33 97.0 32 T................................ AAATCAAACGCATGGGTGATTTGCAGCGCGAA 234620 33 97.0 33 A................................ AGATCGGAGATCAAAATAAAGCGTATGGATTAA 234686 33 97.0 33 A................................ AATCTCCGAACATCACAAAATTTTCGGTCACGC 234752 33 97.0 34 A................................ AATCTCCGAACATCACAAAATTTTCGGTCTCGCA 234819 33 97.0 33 T................................ AAATCTGCCGAACATCACAAAAATTTCGGTCTC 234885 33 100.0 34 ................................. CTTGCCACCATTAACATTTTATGTGCAACTGGCT 234952 33 100.0 33 ................................. CCTTTTCCAAAAAGATATGCCGGAATCTCCAGT 235018 33 97.0 32 T................................ AAATCTGCCGAACATCACAAAAATTTCGGTCT 235083 33 97.0 35 C................................ CTATGTAAACCGGTGAACAAAGTGAACGGTTTACA 235151 33 97.0 34 T................................ AAATCTGCCGAACATCACAAAAATTTCGGTCACG 235218 33 97.0 33 C................................ TATTATGTTTACCCAAAAAGACTGGTTAGACTT 235284 33 100.0 32 ................................. TGCAATATAAAGTCGGGACATCTTTACTCCTC 235349 33 97.0 33 T................................ AACGTAGCCGTCATACATGAGGTTTTGAGGGCT 235415 33 97.0 33 T................................ CGACTTGGTAGCCCATTAGCAATCCTTATAGAT 235481 33 97.0 33 A................................ ATCGGCTGAATATTTCCATTTTGAACAACATCC 235547 33 97.0 33 C................................ TGTATCTCTCCCCTGAAACGGGCGACATCGGAC 235613 33 97.0 34 A................................ CAAATGTTTAAACGGAATAATAATCGCCGTATCA 235680 33 97.0 33 C................................ ATAGTTACCGGCAACCTGACAAGATTCCAAGCT 235746 33 100.0 32 ................................. ATTTTCTGAAATGCCGTTATTTTTTTGGTCCG 235811 33 100.0 33 ................................. TGTTTTAAGTTGATTGCTAAATTTATATCAGGA 235877 33 97.0 34 A................................ TCGATTTTTTCATTTTGTTGGCGGGGATACGCCA 235944 33 97.0 32 A................................ TTGTATTATGCGCCGCAGGGGTTTTAATGTTT 236009 33 100.0 33 ................................. TTTAGCCATTTGTTTCACCCAAATCTTTCAGGA 236075 33 97.0 35 T................................ GTTCAATCCGTATGCAATCGGCGTGGTAAATGGCA 236143 33 97.0 33 ......T.......................... AGTCTTTGCAAGAAGCAAATGAACGAAAACAGA 236209 33 93.9 32 A.....T.......................... AGTCATCGCGTTTGGCAACGCTTCAGAAACTG 236274 33 90.9 33 C.....T...............G.......... CTGAGCTGTTGGGCGTTTTGGCTTCGGGCTGCA 236340 33 84.8 33 T...........TA........GA......... GGTCACGCGTACGCGCGGAATCGCGCCGATGGC 236406 33 93.9 33 ............TA................... ATCGGCTCAGTCGCAGAACCGCGCATATCTGGA 236472 33 90.9 32 TT....................G.......... ACATCCTCGAAATCCCGCTCCGTCATCTCCCA 236537 33 69.7 0 .............A...A...A.A.A.A.TGGA | ========== ====== ====== ====== ================================= ===================================== ================== 53 33 96.7 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGTTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCAGTGTTCGAATGCGACATCGCACCCGACCAGTGGGTTGTTTTAAAAGACAAACTCTTGAAAACCTACAACCCTGAAACCGACAGCCTGCGCTTTTACCATTTAGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAAGATACGTTGATTGTATAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATGGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : ATTAAATTTAAATCAGGACAAGGCGAAGAAGCCGCAGACAGTACAGATAGTACGGCAAGGCGAGGCAACGCCGTACTGGTTTAAAGTTAATCCACTATATCAGTACAACTCAGAGATTTCTTACAACAAAGGTCGTCTGAAAACCTTATCAATCGGTTTTCAGACGACCTTTTTCAGTCATCAACATAAGCCCGATACTTTGGAATAGGCTATGGGCATCAGACAGATAGGTCAGCCGATTCGGGTATCAGAATTTCACACCTTTATGCAAGGCTACGATGCCTGCGCTCATATTATGGTAATCAACGCTGTCGAAACCGGCATCCAGCATCATTTGTTTCAATGTTTCCTGGTCAGGGTGCATGCGGATGGATTCTGCCAGATATTGATAGCTGTCTGCGTCTTTGGCAATAAGTTTGCCCATGACCGGCAGCAGTTTGAAGGAATACAAATCGTATGCGCCTTCCAGTGGCTTGTAGACTTTGGAAAATTCCAACACC # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //