Array 1 262635-264360 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKOF01000006.1 Methanothermobacter thermautotrophicus strain WHS NODE_1_length_560865_cov_91_9211, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 262635 30 100.0 40 .............................. TTGTCTATGGTTATGGTTAGGGTGTCTGGTGTGGTTGTGG 262705 30 100.0 37 .............................. ACACCTTCCTCTATGCTGACAAGGATTTCACCCATAT 262772 30 100.0 37 .............................. TACGCTGCCGCATAATGTAGAGTGGTATACTCATGAG 262839 30 100.0 37 .............................. TTGCTTCGGTTATGGCTTCGTCTCCTTGGGTTTCCAG 262906 30 100.0 37 .............................. TGGACATGTTGAATAGGTACAAAGCCTTCACAGAGGC 262973 30 100.0 47 .............................. TGAAGAATTTCAGCTAAGTATTGTAAACTACACCATAAGTCCTGATC 263050 30 100.0 39 .............................. TCTGATTTTTTCATCTATTCTACTAACTACATTCCCTGG 263119 30 100.0 39 .............................. TTCGCTTTGGGGTGTGTGAGATCGTGGTCGAACACAAAA 263188 30 100.0 37 .............................. ATAGGGCCTAAATGGGGCTCAAATGGGGCTCAAATGG 263255 30 100.0 38 .............................. TTGAGGATCCAAATCATTGAAATAGCCCCATACCAAGG 263323 30 100.0 37 .............................. CGGGCCTCCCTGATGAGAGGGGGAGGGTGACAATCCC 263390 30 100.0 38 .............................. TTTTCTCCTCTTCCTCATTCATGGCTGCTACTTCCTTG 263458 30 100.0 36 .............................. ATCCAACCCCCACCACACAACACCCACCACAACCAC 263524 30 100.0 37 .............................. ATCTTCCAGCGCCCCCGAGGAGGTCGAGGGGGGACTA 263591 30 100.0 36 .............................. AAGAGGATGCAGACAATCTGTAGCCGGAAAGACCTC 263657 30 100.0 40 .............................. ATGGGATCCAGGGAGTTACTGTGGTGGATAAAAGTAGAGG 263727 30 100.0 39 .............................. TATGTTCACAAGGTACTCTTCTGGGGACGGACATTTTAG 263796 30 100.0 37 .............................. TGGGATTTTTTTCGAATTTAAGCATCGCAATTGCCTT 263863 30 100.0 36 .............................. TCAACAGGAGGTTCTGGGGGCCCTGTGGGGTGGTTT 263929 30 100.0 36 .............................. TATGTGAAGTGCCACCTTTCTGGTACTTCATACCGG 263995 30 100.0 37 .............................. TCATGTGGATACTCAGAAAACGGGTTCTCTATCCATT 264062 30 100.0 38 .............................. TCAAGGTGATAAAATGAAAAAGAAAACTTTCAAAAAAA 264130 30 100.0 37 .............................. AATAAGGGCCCGGATAAGTTTCCGAAAAAAAGAAAGA 264197 30 100.0 38 .............................. TCCGCTTTGAACTGTGTGAGATTGTGGTTGAGCACAAA 264265 30 100.0 36 .............................. AGAAAAAATCAGAAAATATATATAGTACACAGTCTA 264331 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================================== ================== 26 30 100.0 38 GCTTTAAAATGGACTGAATAGTATGGAAAT # Left flank : TTGAGGCCTATAAATTGATAAAACATGTTTTGGGCGATCAGAAATATGAAAGTTTCAAGACATGGTGGTAATTAAAAATTTCTAATTAAAAATTTCTATTTTAACTTCATTTTAGCATTAAAGGTGATTGGGTGTACCTTCTTGTAGTTTATGATGTTGATGTCAAAAGAGTTAACAAGGTTCATAAATTTTTGAAAATGTATCTGCACTGGAGACAGAACTCAGTATTTGAGGGGGAGGTTAGTAAAGCTCAGTTTAATGAGATACAAACAGGTCTCCATGAATTGATAGATGAGACCTGTGACTCTGTGATGATTTATGAATTTCCCAGCAAAAAATATGTTTCTTTACATGTTCTTGGAATTGAAAAGAACACTATTGGCTTTATACTTTAAGTCAGCCTTTATAAATAGAACTCACTATTATAGGTAGACTTATAAATTTGTTGAAACAAAGCATTTTTAGGGAATTTTTGACCTAAAAACAGAATAATTGGCTCG # Right flank : TAAATTCTAAGGGAATTCGCTTCGCTATACATAGATATAACGAATAAAAGATCAGGGTTAAAATCAGACCAAAATGGGATTGAAATATTTTTAACATACTCTCAGCATTCTCTAATGAAACCTCAACATTTATTTTATGATTAACATTTCATTACAGCCGGCCTCCTCATGGTACTTAACCTTCCTGACCTCAATGTCATAATCATTAAATTCATCCATCAATGGTTTAAGGTGTAAAGAACGCTTTCTTCTGTGTATATTGTACACAGGAAATATTCTAACCTCTTTCCCGATCCTGAGCATCTCCCTCACAGATTCAACATGGAAACTGTAGTCCAGCAGGTCCTCATACAGGAAAAGGAAATTTGCAGAGACCACCAGGTCAAATTCCCCATCATCAAATGGGAGAAAGGGGAGTTCACCGGCTATGTACTCTGATGGGTTCCTTTTATAGTCATCCAGGAATCTTCTGAAAACCATCCTCCGGTAATCCTCAACAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAAAATGGACTGAATAGTATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 127331-125937 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKOF01000005.1 Methanothermobacter thermautotrophicus strain WHS NODE_2_length_343349_cov_96_8327, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================= ================== 127330 28 90.0 38 .....................--..A.... CCAGAATCAGTTGAAAATGGAGAATATCAAGTCGGAGA 127264 28 90.0 38 .....................--..A.... CCCTGGAGCAAGAGGGCCCGGCACAGGATGTGAAACTG 127198 28 90.0 40 .....................--..A.... CCAAGGTGTACTTGGTGTGGAGGAGTCGCTGCAGCTCCTC 127130 28 90.0 36 .....................--..A.... CCTCATCTTCATCATATGCATTGCTCTCCCGGTCTG 127066 28 90.0 37 .....................--..A.... CCTGTAAAGCTGAATGAGTCGCTCGTCTGGGTGCTGA 127001 28 90.0 39 .....................--..A.... CATTTTTTCTTTTTTCTCTTCTTTTTTCTCTATTTTTCT 126934 28 90.0 39 .....................--..A.... CATCTCTAAAATAATACTATCTGGTAGTAAGTTAATTTA 126867 28 90.0 39 .....................--..A.... CATGACCTCCCCCCTGAGGCACATCGAGACACAGATCTA 126800 28 90.0 38 .....................--..A.... CATATTTCATCTGTGTCGCCTGCTCATCCTCTCCTCTA 126734 28 90.0 40 .....................--..A.... CACGATGGTGGCGTGGAGTTGGATGATTACCTCCCCTGCG 126666 28 90.0 37 .....................--..A.... CACCATGAGTTTGATGAGTCTCTCCTCGAGCCTCTCC 126601 28 90.0 42 .....................--..A.... CAGACGTGAATGAGAGGAATGAGTACATTCAAGCCTTGTACT 126531 30 100.0 36 .............................. GGATGCTAAGGCAAAGGTTAGTAAGACCATCAATAA 126465 30 100.0 37 .............................. TTCTATGGATTTAATGTGAAGGATCTTGCCCCCATAT 126398 30 100.0 39 .............................. CTCCCTCAAAGGCTGGGCATACTCTACCCTCGTATACTT 126329 30 100.0 37 .............................. CAGTCAAGGTTTTTCATTCACTGTTTTGGTTTTAATA 126262 29 90.0 35 ............T.-......A........ TTATAAGGAGATCACGCATAACAGCCCCCATGAAG 126197 29 90.0 73 ............T.-......A........ ACAGTCACGACGCCGGCCAATTACTCATCAGTGGCCAGTTAAAATCAGATCACCAATTACTCATCAGTGGCCA 126095 29 93.3 35 ............T.-............... ATTTTTCATTTTTGAAGAGTTTAGGGAGCTTTTTA 126031 29 93.3 36 ............T.-............... AAAACGGGGAGTGGGAGGTCCTACTCGACGTGATGG 125966 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================================================= ================== 21 30 92.7 40 GTTAAAATCAGACCAAAATGGGATTGAAAT # Left flank : TGATTGGTTTATATAGGAGGGCTCTTCTAGATCCTCATTGAGGGGGTGGTGAAAAACATTTTGAGGGCTCTTTTCAGTTTGAGTGCACACTGAGAGGCTCTATGAATACATAAATGGGGTTTATGATTATTAGATATCTAGCACGTTAAAAATTATTTAAATTTGTTTTAAATGGATTAAATTATTTTTATGGACTATTGGGGTCTTCTCATCAAATCGTTTTTGAGCCAATTTTCACCAGCAGATTATAATAACTAAATATTATTTTATTCTCATTTAAGGATTAAAAATTGCATAAATTAGTTTATGGCCATTTATCTCGTCAAAAATTCTTTTTAATAATTTTAAATCCATTTTAAATCTTATTTAATTATTTTAAAGGAGGATGTCAGGTAGTCTATCTATATAAATGGAGTGCATTATCGGGGATCGTCAAATTTATATGTCTTAAAGGAGAAATTTTAGAGCGATAGGGGCCAAATAAAGAAAAAATCCGCCCT # Right flank : ATATTTTTACTGGCCTCACTTGCCTCACTTAGTTCTCTACATGATGTGCTATTATTATGTTTATTCCTGGTAGCTTCCACTGTACCTTCCAGACCCCTCCACACGGAATACCACTGCCTGAACTATCCTTTCACCCCTCTTGAGGGTGTACTCATATTCGCCATGGTTATGTAAAAGGAACTGGAGTGTCCCCCTGAAACCGGGATCTCCCACGGCGGTGTGAACAGATACAAAGGACCTCAGGAGAGTTGATCTTGGAAGGTAGAGCATTGCATACCCCTCAGGTATCTCTATCATCCTGTCAACACTTACAAGGTAGGCTTTACCTGGCTCAAGTCTGTAGATGGGCGGTTCAAGCATTTCTAGGGGTGGAAGGTTCTTCTCATCGTCAATCAGTGACCCGGGTCCCATCTGTCTGTAAACCTTATCAACTCTCAGGTCGATTCCAGCTGGCTGGACGAGTTCCTCAAAGTCCGGGAAAAGTTTCTTTAACAGTTTTT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCAAAATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //