Array 1 154323-154530 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRVR01000014.1 Pseudomonas aeruginosa isolate 82.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 154323 28 100.0 32 ............................ TTCGGGATGATGAACCGGGCATGCGCGTTAGC 154383 28 100.0 32 ............................ AGGGCGCGCCCGGAGAAAGTCACGCGCTTCGA 154443 28 100.0 32 ............................ TGGCCCGCTGGTGGGCAACGGGTGCGACCACG 154503 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGTCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGCATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTGGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 163692-163058 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRVR01000014.1 Pseudomonas aeruginosa isolate 82.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 163691 28 100.0 32 ............................ ATGCGGTTCTGCCACTCCAGCGGCATGGCTTC 163631 28 100.0 32 ............................ TCTTCGCGCATCGCCGGGGGCAGGACGCCAAG 163571 28 100.0 32 ............................ GGGAGCTAATCCGGTAGGGGATCACTAGCGGC 163511 28 100.0 32 ............................ TTCGAGCTAAGGCCCTTGGGGTCGCTACGAAC 163451 28 100.0 32 ............................ TTGGGTACAAATACCTTGGGTGATATCCCCTT 163391 28 100.0 32 ............................ TGAAGCGGCGCGTCGCCGGCACCAAGGTCTCG 163331 28 100.0 32 ............................ TCCCGCCGACGGGCTGTGTGTCGTGGAAACCG 163271 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 163211 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGT 163151 28 89.3 36 ...................TA.G..... AAAATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA C,C [163125,163128] 163085 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ==================================== ================== 11 28 96.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCATCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 287-2174 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRVR01000041.1 Pseudomonas aeruginosa isolate 82.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 287 28 100.0 32 ............................ GTTCGCCGGATCGTTGATCCGACGAGCCGGGG 347 28 100.0 32 ............................ TGTTCATCCTGGCAGCCGGCCCGATCTGGGGC 407 28 100.0 32 ............................ AACAGCCTCCGCAAGGGAGGGAGGGGAAGCTT 467 28 100.0 32 ............................ AAGGACTATTAAAGGCAGTGTTTCTTCGCTCA 527 28 100.0 32 ............................ AGAAGCCCCGCCGCCAGATCGAGGAATATATT 587 28 100.0 32 ............................ TCGACGCGGAGCTTGCAGCCATCGACGCGAAT 647 28 100.0 32 ............................ ATTGCCGTTACCTCGAGCTTGTCGTCTATGGC 707 28 100.0 32 ............................ GTCCCGGTATTTATCCAGGCCTGGGCGAGTAA 767 28 100.0 32 ............................ AGTAACGGCCAGGTTCGCATCAATGCGCCGGA 827 28 100.0 32 ............................ ACCCCAGATCGGAAAACGTCGCACCCCTTGCC 887 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 947 28 100.0 32 ............................ ACCGGCTGCGCCTGCTCAACAACCTTGGCAAC 1007 28 100.0 32 ............................ CGGATCGGACGGAGGTTCGTCCGGATCAGTCG 1067 28 100.0 32 ............................ TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC 1127 28 100.0 32 ............................ AGTCACAGGTCAGCCCGTCTTCGTAGAGATGG 1187 28 100.0 32 ............................ ACGCCAAATTCACCGCAGTAACTGCACGGACG 1247 28 100.0 32 ............................ GCGACCTGCTGTTGCAGAACGGTTTGACTTAC 1307 28 100.0 32 ............................ AGCACGTGGCGCATAAGCCGGCTCAGCAGCTC 1367 28 100.0 32 ............................ AGATTGCTGTGCGTCTGGTGTTCATAGCCCCG 1427 28 100.0 32 ............................ TCCGAAGAGGCTGCCTAGCCAGATTGCTGTGC 1487 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGCGTCTAAATCCTA 1547 28 100.0 32 ............................ TACAACTCCGAGGCCAACAACGAAATCGGCGC 1607 28 100.0 32 ............................ TTCGGCCGATCGGTCGCGAAAGGCCATGAGTG 1667 28 100.0 32 ............................ TTGCAGCCACCCTCAAGGCCTGTGCCGCCACC 1727 28 100.0 32 ............................ GTAACCCGGCGAGCGTGCGAGCCACCGTCAAG 1787 28 100.0 32 ............................ TACAGTCGAAGAAAGAAAAGCGCCCAAAACGC 1847 28 100.0 32 ............................ TGACTCAGCAGGTCCAGCGAGTCGATACCGGC 1907 28 100.0 32 ............................ GCGATCATCCCCGGAGTCGACGTCAATGCGGT 1967 28 100.0 32 ............................ ATCCGGCGCAATCGAGATGGAGCCATCGCAGG 2027 28 96.4 32 ......................C..... AGCTCCGGCACCCCGGCGCCCATTGCCAACAC 2087 28 100.0 32 ............................ CACTGGAGAACGGGCTTACCTTCCTTGTAGAG 2147 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //