Array 1 102785-101744 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEWB010000004.1 Avibacterium paragallinarum strain Z1S-2-1 NODE_4_length_136587_cov_177.615, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 102784 37 100.0 33 ..................................... GAATGTCCATAGTTCTAGGGCGTCCTTATACAT 102714 37 100.0 34 ..................................... GTTTTCACCTCGCCCACATACTCAAGGGCAGCGG 102643 37 100.0 36 ..................................... TCATCAATATAGAAAAACTTCCCACTTTTGAAAGTG 102570 37 100.0 37 ..................................... AGTTTTTTCCTACCAATTCTTGCATTTTTTGTTTTAC 102496 37 100.0 36 ..................................... CTCTCTCCATCGTACCAACGCACCACGTACCACCCT 102423 37 100.0 31 ..................................... ATTTACAAGGGTATATTTGCATAATGGATCG 102355 37 100.0 34 ..................................... ATAGTTTTCCTTTTAGTTAGTTAGTTATAATCTA 102284 37 100.0 35 ..................................... CTTTTTCCCCTGGCTCACTTCCCAACACTTCGATC 102212 37 100.0 37 ..................................... TTTTCAAGCAAATCAAAACTGTAGCCAAACCCTAAAT 102138 37 100.0 35 ..................................... CGTATTGCACGGTTTGGGTTGTGTCCCCCTGAAAG 102066 37 100.0 33 ..................................... TAAGTTTTATGCGCACCCGCAAGCGAAAGCGAT 101996 37 100.0 34 ..................................... GGTTCAGGTACTTCAATACCGTTGATAAAACGTT 101925 37 100.0 36 ..................................... CAGGTATAAACGTCATAATTCGCGTTGATTTTTGGA 101852 37 94.6 35 ....................T.C.............. AAGTGAAACGTATTGGTTGCGTCATCGTGCCAGAT 101780 37 78.4 0 ............A.......CT.........CGTC.A | ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 98.2 35 GTCGAAAGACATTGCCCTGTACGAAAGGGATTAAGAC # Left flank : ATACAATGCGTTGCTGTCGCAATATTCTCTTTCCCACCAATTAACTGGATTAATTGCGTGATATATTGAGGATTAATTTTCTTTACCATAATTTTTCCTTTCGTCTGAAAAATGTTCGTGCGTATCTTACGCCTTTTTATTTTTCCCTCAATGGGAACGTTCCCAATCTGTGATCTAAATCACATATTTAGATGAAAAATAGGGCAATGATAAAATGGAAAGGAAACCAAACAAAAGTGCGGTGGGAAATTTGGGGATTTTTGTAGTGAATACTTGGCAAAAGTAGATAAAAGAATGGTATAATACGCACCGTTTTTCGATTGATGAAGAATGAGATGATTTAGATTTTATCCGTTGTTCCGGTATAAGGGCAGGGGAGAATAAAGGAAGAAAATTGGTTAAATATTACTCAATTCAGTACCTAACTCTTCAACACATTGTCATTTTCTCGAAAGGTATTCCTAACCTATTGAGTCAAAAAGAAAAAATCATCATCCGCA # Right flank : AAAAAGAATAGTCTTAGAATGGGATTTTAGGAATAGTTATCAAAAACACTAAACCAACCCACAATCAATACAACTCGCCTTAATTTCTCTGTTTTCTAATAAATCAAATAATTGTTTGACGGCTTGTTTGCCAGCGGTGGTGAAGCCGAGATCCACGCTTAGGGTTTGAGGGAAGAGGAATCGCAATAGTGGGTTGTTGCCGATGCCGGCAACGCTGATGTGAGTGATTTGATGTTCTTGTAGCCATTTTACCACGCCGATTGCTAAGGTGTCGGTAGCGCAGACAATGGCGGAAATTTGCGAAAAATCCACCGCACTTGCTAATTGATAGGCGCTGTCGTAGCTCAGCTCACCCAGCACAGCATTGGGCGTAAGCTGATGATCTTGGCAAAAGCTAAGATAGGCTTGATGACGCAAATAACCTGTGGTCATATCGCTTTCTTGCACACCCAGATAAGCAATTTTTTGATGACCTTGCTGTAGCAGTTTTTCTAGTAAGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTACGAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 71529-74166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEWB010000008.1 Avibacterium paragallinarum strain Z1S-2-1 NODE_8_length_97670_cov_174.071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 71529 37 100.0 34 ..................................... CAACCAGCTTTCAATCTTGGAAAACACGCCCTCA 71600 37 100.0 36 ..................................... CTTCCCATACGCTTACGATTGCATGCGTGTTGTCGA 71673 37 100.0 35 ..................................... TATCGCCGCCGTACCCAAGCACCACGTACCACCAT 71745 37 100.0 36 ..................................... GTTTCTCGTCAAGCTCAATGCGAATGTATGCGTGTT 71818 37 100.0 36 ..................................... ATCGGATGGCGTTAAAAGTGAGTAAAAGCTACAATC 71891 37 100.0 35 ..................................... CTGCCATAATAATCACCATACCCGCCGTAAGAATA 71963 37 100.0 38 ..................................... GTGCGTGTTGAGATCATACCCTGTCGCCACATTGATGG 72038 37 100.0 37 ..................................... TCTCTAAGCTTTATAAGTTCTTCAATCCCTCCAATTT 72112 37 100.0 33 ..................................... TTTTTACTACCGAGGTAGCCGCTGAAGCTACCT 72182 37 100.0 37 ..................................... TTTTGGCTTTTCTTGCCTTTCTTTATTTTATGTCTTT 72256 37 100.0 34 ..................................... TACACACCTAAGAGCGGTGCTAATAAAGCTCTTG 72327 37 100.0 34 ..................................... TGCTAGGAATTCTTCTACTCCTCCGATCTCATCG 72398 37 100.0 34 ..................................... GAAGATGACACTACTTCTCCGAATTTCTTGCTCA 72469 37 100.0 35 ..................................... TCTTCTACTCCTCCGATCTCATCGATCGATTCCCT 72541 37 100.0 36 ..................................... AAGCTCTAGGAACTTTTCTATTCCCCCAATTTCTTG 72614 37 100.0 38 ..................................... CTCTAAGCTCTAGGAACTTTTCGATGCCCCCAATTTCT 72689 37 100.0 36 ..................................... AGCCAGCAATCAAAATATGTATTTTCAATCGGTCTT 72762 37 100.0 34 ..................................... TCTCCCACTACAGCTAGGTTTCGTGAGGTGCGTG 72833 37 100.0 35 ..................................... GAGATTTCTCTCCCTTATTTGTTCCTAGAGCTAGA 72905 37 100.0 34 ..................................... TCTTGGATGGCCTCTTTAGCATATTGGGAAGACT 72976 37 100.0 34 ..................................... CTTCTTTGACGTATATGGAGCTTTTAATCTCCCC 73047 37 100.0 36 ..................................... GATTTAATCTCCCCAACTATAGCTATGTTCTTAGTG 73120 37 100.0 36 ..................................... ATTCCCCCTATTTCTTCGAGGGATTCTTTGACGTAT 73193 37 100.0 35 ..................................... GTAGAGAATTGCACCCATTGCGCGGTTAAAGTGTT 73265 37 100.0 36 ..................................... ATTATGTCCTGCCTAGCTGCGGCTATCTCGCCCTAG 73338 37 100.0 33 ..................................... CCTTTTGTAAATCCGTTGCACGCCAAGAAGTCG 73408 37 100.0 35 ..................................... ATTTTATAGTCATACGATTTTCCCTTTTCGTTAGT 73480 37 100.0 35 ..................................... GCGGTAGTGGCTACTGAGGTAGCTGCTGAAGCTAC 73552 37 100.0 34 ..................................... CTTCATAACTATTCCTTCTTGTTAACTGAGACAC 73623 37 100.0 37 ..................................... CCTATCCCGCCAATCTCGTCAAGAGATTCCTTGACGT 73697 37 100.0 36 ..................................... GCACTAGCCCCGCGGTTCGTTCATTACCTAACATTC 73770 37 100.0 35 ..................................... GAAGATTTAATCTCCCCTACCACCGCTAAGTTCTT 73842 37 100.0 36 ..................................... CTCTTAACTCTAAGAGCTTTTCGTATCCTCCAATTT 73915 37 100.0 35 ..................................... AACATAAAGTGAGGATTTGACCTCACTTACAACCG 73987 37 100.0 33 ..................................... AGAACTTCTCAATACCGCCAATCTCAGAGATTG 74057 37 100.0 36 ..................................... TCTCTAAGCTCTAGGAACTTCTCTAATCCCCCGATT 74130 37 94.6 0 ...................................GA | ========== ====== ====== ====== ===================================== ====================================== ================== 37 37 99.9 35 GTCGAAAGACATTGCCCTGTACGAAAGGGATTAAGAC # Left flank : TTACTTTTTTAATCTGCACACAATGCTAAAAAATGTCGAATTCGTCTTTTAACAAAAAAGAGCGGTGAAAAAATGCAATATTTATTAGGATATGACATTTCCGATGAAAAACGCTTGCAAAGAGTCCATAGAAAAATGGTAAAATACGCCACGCCTATACAATATAGCGTATTTTTATTTGAAGGGGATCGCAACGCATTACAGAAATGTATTGATGATATTTTGCGACTCATTCACAAAAAGCAAGATGATTTTCGGGTTTACCCTTTACCAAGCAACGCAAAACAATGGCAGCTTGGTGAAGCAATACTTCCAGAAGGCATAATTTGGACAGCCTTACCTCCCAATAATGAAGGAAAGGTGAGTCAAAAAATTGTGGCATAGAGAAATAAAATTGGTTAAATATTATCCAAATCGAAACCTAACTCTTCAAAGTGCGGTCATTTTCTCGAAAGGTTTTTATAACTTATTGATCGCACAAAGAAAAATCACCTTGCGCA # Right flank : AAAAAGAAATTCTATATATAAAAAAAGCAGGCATTCCGCCTGCTTTTTTCTATGTATTTATTGTAAATCTAAATTTACTTCGTATAACGTCTAAACACCAATGTTGCGTTTGTGCCGCCGAAACCAAAGCTGTTTGACATTACGGTATTTAAGCCCGCATTTTCTTTGGTTTCTGTTACGATGTTCATTCCTTCCGCTTGTGGATCGAGGGTTTCGATGTTAATGCTTGGGGCGATGAAATCGTTGTCTAACATTAATAAGGTATAAATGGCTTCGTGTGCACCAGCCGCACCTAGTGAATGGCCTGTCATTGATTTGGTTGATGAAATGGCTGGTTTTTCATTACCGAAAACATTTTTGATCGCACCTAATTCTTTTACATCACCCACTGGCGTTGACGTGCCGTGTACGTTGATGTAGTCGATAGGGGTATCTACTGTTGCCATTGCTTGTTTCATACAACGTTCCGCGCCTTCGCCGCTTGGTGCAACCATATCATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTACGAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //