Array 1 1696647-1699054 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054142.1 Treponema parvum strain ATCC 700770 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1696647 36 100.0 30 .................................... GGGAGCAAGTGTATATTTGCACATAGGATT 1696713 36 100.0 30 .................................... AGATGATCCGTGTATCTACGTCTTGCATTT 1696779 36 100.0 30 .................................... TTCTATGTCGTGCCCTTTCATCTCAAGATA 1696845 36 100.0 29 .................................... ACATACATCCGCAAAAACGGGCGGACGCA 1696910 36 100.0 30 .................................... AATATCAAGATAGATATCCTTGCTTGCAGG 1696976 36 100.0 30 .................................... TCAAAAAAGTGCCAAGAGTATCTAAACCCA 1697042 36 100.0 30 .................................... CATCGTAAGCAACTTCAGGAATAGCAAGGT 1697108 36 100.0 31 .................................... AAAAAATTCTGTCCGTCGTAGCAGGTAGTTG 1697175 36 100.0 30 .................................... ATTGACATTAGCGACCACCTCGACGGTTAC 1697241 36 100.0 30 .................................... GTTGGATACCGCCGGAATGAATGCGTTCTC 1697307 36 100.0 30 .................................... AACATTTACTCCGCGTATCACACAGAAATA 1697373 36 100.0 30 .................................... AAAATCAAAATTAGAACAAAGATTAATATA 1697439 36 100.0 29 .................................... AAATCAAAATTAGAACAAAGATTAATATA 1697504 36 100.0 30 .................................... GACAATTCGATTAAAAGGATTGCAGGCGAA 1697570 36 100.0 30 .................................... ATATCCCCAGCAGGAAGCGCCGCAAGACTT 1697636 36 100.0 30 .................................... ATCGAGATTGAAGTCCGACAGGTTGAGCGT 1697702 36 100.0 29 .................................... ACATACATCCGCAAAAACGGGCGGACGCA 1697767 36 100.0 30 .................................... AACGGGTCTAACACTTTCCCGCTTGGCATA 1697833 36 100.0 30 .................................... AACGGGTCTAACACTTTCCCGCTTGGCATA 1697899 36 100.0 30 .................................... AGCTCTTACCTTCGCCACGCTGAAGCCAGG 1697965 36 100.0 30 .................................... AAACGCTCTCGCTTTGACCTTTCCCGAATT 1698031 36 100.0 30 .................................... GCGCTATACCGAGCTACTTGGCAAATATTG 1698097 36 100.0 29 .................................... CTGTCTGGAACAAGGCTTTACCTGTACTG 1698162 36 100.0 29 .................................... TCGATAACCACCACTTGAACACAAGGTAC 1698227 36 100.0 32 .................................... CGTAGAGGAGTCAAAGATAAGTTTATCCGATA 1698295 36 100.0 30 .................................... TAATTTAAGATTTTTAAAATCATAATGTTC 1698361 36 100.0 30 .................................... AATAAGACGTAAAAGGTCTTTCACGCAAGG 1698427 36 100.0 30 .................................... AAATATCACCGTCAATGTCGCTGTATTTCT 1698493 36 100.0 30 .................................... AATGGTACATAGACGGCGACAATAAGAATG 1698559 36 100.0 30 .................................... TACACAACTCTGTACACGATCCCTGCTTTA 1698625 36 100.0 30 .................................... TCCTAATGGGTACAAGACACTTAGGATACA 1698691 36 100.0 29 .................................... TGCGTTTGATGTTGTCGATATTCCCGTTG 1698756 36 100.0 30 .................................... TACGAGTAAGAAGCTGATGATCATTAAAAC 1698822 36 100.0 29 .................................... CGCCACATGCAAAATACGAAAAGTCTTTA 1698887 36 100.0 31 .................................... TATGAAAAGAAAAATATAGAAGTAGCGAATA 1698954 36 100.0 29 .................................... TTATTCGTTAAAATCGACTGCTACCAATT 1699019 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 37 36 100.0 30 GTTGTGGTTTGATTTCAAATTCTGATGTAAAATAGC # Left flank : ACAGGATCAATGGCGCGCCGAACTTGCCATGGCGCGTTCTTTTGCCGCGACGATCAATAAATACGGCGGCAACACGGCGGTGGTTCACCTTCCCGAAATCGGTATTACGGGAAATACGCACTTTATCTTTTCGGATCTTAACAATATTAAGGTCGCCGATCTGCTTTCGGATTGGCTCAAAAAAAATAATTTGGACAGGCGATAAATCATGCGGATGTCTCAAAAATTATCCAAGGTTCGCTGTTTTTTTGATCATTACTTTTCATATGAACTTTGAAATTGTTGCAGCCGTGATTAAAAAGAAACTAAAAAGCTATTGATAATCAAGAAAAACAGAGTTATTGTTATACATGAAAAGAGCGTACTATGGGCTGGAATACTCGGGTTGTTAACTATCGACGCTGCCCCGCCAGTATGCTCTTTTTATTTTATCTATGTCATTACTTGATGCGCAATCGGTGGCAGGTTGCGGAAACATCAAATATAAAAGCTCTGCTAGT # Right flank : CATAAACTCTATAATTGCTTGCTAAATATAGGGTTTATGCTTGTTTTACACCAAAAAAACAGGAAAAATGAGCGGAGTTTGGCCTATTTTTTTCGGTTTTTAAAACATTTCCAGTTGCTTAGGCGCTTTTTCTTTAGGCTTTGGGGACAAACCGATATATGTCAGTATTTCTCCGAACTGCTTGTCGGTAAATTTTAAAATACTCACCGTCCCTTCCCGCGGCAGCCACTGTTTGATTCTGTTTTCGTGGACCGCGCAAGCTTCTTTACTGCCGCAAAATCTTTTATACACACTGAATTGCATCATATCAAATCCGTCTTCCAAGAGTTTTTTTCTAAACTCCGATGCGCGTTTTCGCTGAGGCTTTGTATTCGTCGGCAGATCAAACAAACAAAAAATCCACATTATCTTATAAGCGTTTATCCGTTCAAAACTCATAGCTATATAAAAACAGGTAAGGCCATTTTTTCGAATTCTTCCGTAAGCACTTTTACTAATGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTTCAAATTCTGATGTAAAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //