Array 1 1976191-1975022 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJZJ01000001.1 Raoultella sp. Lac1 NODE_1_length_3185406_cov_118.778158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1976190 28 100.0 32 ............................ AGGACCTGTGAAGAGGTGGTGTTAGCGGTGGT 1976130 28 100.0 32 ............................ GGGATCCCGTTTTCCCGGTACACCTGCTCCAT 1976070 28 100.0 32 ............................ CGTAACGTCCGGTGATTCCGGCACTGGTATTG 1976010 28 100.0 32 ............................ ATGCTGGCGCTTATTGCTGCCGGGGCCTCATC 1975950 28 100.0 32 ............................ GGTAATGGCCGGCATCCCACTGAGCAGACGTG 1975890 28 100.0 32 ............................ GGGAAAGCCCCGTTCGCGATGTAGCCATTAAA 1975830 28 100.0 32 ............................ ATCGCCGGGAAGGCTGAGGGGTGAACTCCATC 1975770 28 100.0 32 ............................ TACGATGGTCACCACGCCGAACTCCGGCATTC 1975710 28 100.0 32 ............................ TGTGAAAGTGATGACTGAAAAAGCGGCTGGTG 1975650 28 100.0 32 ............................ TGCACCGCGCCGCTACCGGCATTAAGGTTAAC 1975590 28 100.0 32 ............................ TGCATATTGACCACAGGGGCGGCGGTACCAGT 1975530 28 100.0 32 ............................ TAAGCCAAACATCCCCCCGGTGGCCTTCTCCG 1975470 28 100.0 32 ............................ ATATCCAGCCCGGTACCTGATGATGTGCCTCC 1975410 28 100.0 32 ............................ AGCAGGCGGCATATGCGCAGGGGTAAATATGA 1975350 28 100.0 32 ............................ TTCGAGATAAACCTCTGAGCCTTTCCGTAAAT 1975290 28 100.0 33 ............................ ACTCAGCACACCACCCATCACCCTTACCGCGAT 1975229 28 100.0 32 ............................ TTGTGCAAACGTACGAACGCGTACCTATTATC 1975169 28 100.0 32 ............................ AAAACCATTTCAGGAGGCAACCATGACTAATC 1975109 28 100.0 32 ............................ TCGTGTTCCTTGTTGACGGCTTCCAGCATGCC 1975049 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCGTGCTACCCGCTCACTTTCATCGGGAGTGAGGGTTCGCCCCGCACTTTTGCGACGAGCAACGTTGCGCTCATTAATGCCCGTTACGCGAAGAATGTCCGCTTTAGACATCTCGGTCCATTCATGAATATTATCGAGTACGCTGACCGGTAGCCCCTGATTGAGAAATTCGATCAGCCGTATTCCCCGATTTGCAGGCAAACCGGCATAGCGCCAGAGCGCGTTGTCAGCAGGCTTCTGCTCGGGAACCCATGTTCTCATTTTTCATCTCCTGCTTTCTGTCATTTGTCATGGTTAAGTATAGTCATTTGTCTGGTATTTGGCAGGGCGATTTTTTGACGAGTCGTACATCCCTGGCAGATGCCGGAGACCCTTTTTTAATGTTTATTTCTAATTGTTTGATTTTAAATATTATTTTTTACAGGCTGAAAAAAGGGGGTGAAGCGTAATTATATGAGGTTATTTCGTGAAATCAGTAAATTATGGAGATATTATGTCA # Right flank : TGACATGTCCTGAACAATTTCAAAGACCTGATGTAGGGGCAAAAAACTACGGGCGTCAAAAAAACCGGCAACCCTTATCAGGACACAATCTCACTGCTGTTTTTAAACCGTGTCGGGACTTACTGAGATAAAGTGATTTGAACAGTTCAGTATCTGAAAGAGTATCGAATAACGATTCGCTCATCGTCGGTTCTGAATGAACTTAAATGCCGTGGAACAGGCTGGAATTCTATGGGGTTTACCAGAAAGAGAACGTATGAAAACTTCACACCGTTCGATAACCGACAGACTGTTGCTGATGTCTGCGGAATAAAGAATGGTGCGTCCGAGTGGACTCGAACCACCGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCATTATGGTGCGTTTAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTATAAACGCATTATGGTGCGTTCAATTGGACTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2030128-2029679 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJZJ01000001.1 Raoultella sp. Lac1 NODE_1_length_3185406_cov_118.778158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2030127 28 100.0 32 ............................ AGGACGGAACGCTCTACGGCTTCAACGACGAG 2030067 28 100.0 33 ............................ GGGAACTTTAACCGGGGCAGGACATACCCACTT 2030006 28 100.0 32 ............................ TCCTTACGACGTTGCTCCTTTGCCCTTTGCCG 2029946 28 100.0 32 ............................ GTGCTGCACATTTTGAACAGGTTGCAGGGGAT 2029886 28 100.0 32 ............................ AGAAACTGTATGGGTGCCAGCCTGGAGCATGT 2029826 28 100.0 32 ............................ ATACCCAACCCCATAGCACGGCCCTCTCTGGT 2029766 28 100.0 32 ............................ ATGCTCGCAGCCGCCCCGCAGGAGGTGAATAG 2029706 28 85.7 0 .....................C.G.G.C | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTGCCAGCGCCGCTCTAGCAGTGCTCCGGCCATGCAACGGGCGCGCTTAACGGTCGGCGGACTGGGCAAACTCTCGCGCCAGCGCCAGAAATGCGGCCAGCCCGGCGGAGGGGTGGCGTCTGCCGGGTGTCCCTGGTGATTCCAGCGCCCGCCGTGCTGGTTGGCTCCGCTTCCCGTCCAGGTTTCGCTGGCGTAACGGCCGGTCACCAGACGATAGAAAATCATGCAAAAGTTCCCGCCTTTCAGGCAGCTAACACGTCTCAATAACGACATTTGTCATGTTTCATTTTAGTCATTTGTCGGGTTGTTGAGGGGGTAATCGCGGGCACGGTTGCCAGGGAGGCAGGATTATGCAGTTGACTACGGAGACCTTTTTATTTGTTATTTTTGTAAGCTATTGATTTTCATTAAGAGTAATGACAGCTTTGAAAAAAGGGTGAGATGAGTAAATTTGAGGTTTTTTATATATAAAACAAAGAAGTGAGTTGATATTATTTCA # Right flank : GCATTAACTCGCTGATTATCAGAATAAATTGTGCCATTCATTTCTGGACGATAAACTGGAAAATCAGGCACGGCCGAAAATAGTGATTCGAGAGGACCGACCGCTGGACGGTCCGCCATTTTCGCTTTATCAGCCCGCCATTCAGCTTCTACTGCTGCAACACCTCAGCAAATTTCGCCAGCCATTGCGGATGCGCGGGCCACGCAGGTGCGGTGACCAGGTTGCCGTCGACATGCGCCTGATCGATACCTATTTCAGCATAATGCCCGCCGCTGAGCCGCACTTCCGGCGCGCAGGCCGGATAAGCGCTACAGGTCCGGCCTTTCAGTATTCCTGCGGCGGCCAGCAGCTGCGGGCCATGGCAGACGGCGGCAATGGGTTTGTGCGCGGCGTCGAAGGCCTGTACCAGTTTGAGCACCTCATCGTTCAGGCGCAGATATTCCGGCGCTCGTCCACCGGGGATCAGCAGGGCGTCATAATCCTGTTCTTTTACTGCCGCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //