Array 1 96347-97168 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JRKD01000002.1 Escherichia coli strain 381-1 contig_2, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     96347	    29	  96.6	    32	............................A	GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT	
     96408	    29	 100.0	    32	.............................	AAAAGGGCCGCATTGACGGCCCTGTGTTATCG	
     96469	    29	 100.0	    32	.............................	TTAGCTGTTAGCCAAACATGTCGACCTGTTTG	
     96530	    29	 100.0	    32	.............................	GGGTGGCGGTGGTGCTGTAATTCACACCGGTA	
     96591	    29	 100.0	    32	.............................	TATTCCCCCAGTCACCCCCGCCACCAAAATCA	
     96652	    29	 100.0	    32	.............................	ATTTTTCAGACTCATCAAAATAATCCTTTAAT	
     96713	    29	 100.0	    32	.............................	CATTGCCTTTGCAGCGTCTTTCCGATCATTCA	
     96774	    29	 100.0	    32	.............................	AACGTGAGATACGCCTCCCAGCGGCGCTCGGT	
     96835	    29	 100.0	    32	.............................	CCGTCAAACAGTATCACCGCGTTAACGCCCGC	
     96896	    29	 100.0	    32	.............................	CCACACACGTCGAGCTGGTGGGGGTTAATGCT	
     96957	    29	 100.0	    32	.............................	ACACCTCTACTGACGTTCCTGAACAAGAAGAT	
     97018	    29	 100.0	    32	.............................	AAACCGGACGAGGGCGCGCTAAAACGTGATTA	
     97079	    29	 100.0	    32	.............................	CCTCTCAATTTGTAACGTCTGCAATGTCAGGC	
     97140	    29	  93.1	     0	..........T.................A	|                               	
==========	======	======	======	=============================	================================	==================
        14	    29	  99.3	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA
# Right flank :  ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//