Array 1 7928-10222 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKM01000060.1 Leucothrix pacifica strain JCM 18388 JCM18388_1__paired__trimmed__paired__contig_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 7928 32 100.0 35 ................................ ATCAAGACCAGAGATTTTACGGACTTGTGTACCGT 7995 32 100.0 34 ................................ TTATGTCACCTTTAAAGTTATAATAACTCTGACT 8061 32 100.0 34 ................................ TGGCAACAGAAGCCAGTAAAACATCGGTTTACAG 8127 32 100.0 35 ................................ CTGGTATCGGTGGCTTTGTAGGTGGCGCACTGGGT 8194 32 100.0 36 ................................ TGATGTGTTGGCTGCTATGAGTTCTGTACTGGAATC 8262 32 100.0 36 ................................ TAATCAACTTTAGCTAGATAAACGGCAATTAATCAA 8330 32 100.0 35 ................................ CAGTCATAAACATAAACAGCGCCTTGGTCATTAGC 8397 32 100.0 35 ................................ ACGGTAACTCGGGTGATACAGGTTTGGCAATGCGC 8464 32 100.0 34 ................................ TGCAAACTGCATTTCTCCAAATAATTCGCTGAAC 8530 32 100.0 34 ................................ GCTGCACTTTCGCGTGGTATACGCCTCGTTAACA 8596 32 100.0 34 ................................ GCTGAAAACAAAACTTAATTTATCAGCCCAACTC 8662 32 100.0 35 ................................ TATTTCCTGACCTTGCTCATTCTCAAACCATAAGT 8729 32 100.0 34 ................................ AACTTGCTCAGTAGAATGTATTTTTGCGTTATTG 8795 32 100.0 34 ................................ AAAGCGCGTAGATAGACGATGCTTAAGCATATAC 8861 32 100.0 34 ................................ TACGTAAACATCCAGAAACGAGCCTTGCATAATA 8927 32 100.0 34 ................................ ATGTTCCATCGAATAAACCCTATCTTGTGATTTG 8993 32 100.0 34 ................................ AGTACCAATATCGAGAATAGTTTTGGGTATATTT 9059 32 100.0 35 ................................ CTTTACTTGCCCGAACCCCATAGCCTGTACGCTGG 9126 32 100.0 34 ................................ CATTGAATAAACCCTGTCTTGTGATTTGATTAGT 9192 32 100.0 33 ................................ AACGTAAATCATCTAGTGAAAACTTCCATCCAT 9257 32 100.0 36 ................................ AGTGCTTACTCTGTACATTTTGTTATGGTACTACAA 9325 32 100.0 36 ................................ GTGCAGCTCTTTTGCTGCTTGCTTGATTCTATTCAT 9393 32 100.0 33 ................................ AATCACTCGCTCGTAATAACGGGTCTTTTCAGC 9458 32 100.0 34 ................................ ATTGAAGTAACGCATTTCTGTTAACACCTCTAAA 9524 32 100.0 35 ................................ ACTGATTCCCACTCCTTCTGCATTTCATCAAAGAG 9591 32 100.0 34 ................................ GCTGACTTATTGCCTAATAGTGCAGAACCTGGCG 9657 32 100.0 35 ................................ TATTTATTTATGAAAAAGGTGTACTTAAATCAAAT 9724 32 100.0 34 ................................ TTTAGCTTCCAGCGTGTCAATGGCTGCAACTTGG 9790 32 100.0 35 ................................ AAAGAAATGATTAAGCGTGAATACCAGTTACTGAA 9857 32 100.0 34 ................................ CTTAGGTGCAGCCTTATCAACATCGGACCACATC 9923 32 100.0 35 ................................ AAGCTGAAACAATGGTAGTAAACCCCCTTAAAGGA 9990 32 100.0 36 ................................ TGAGAGAGGCGAAGCCGAACGGCAGCAAGGAGGGAA 10058 32 100.0 34 ................................ AGGGAGTTCTGAACGATTAGAAAGATGCTCACCC 10124 32 100.0 34 ................................ TGTATGTAGTATGGGCGTTTCAGGCTCGTTCTGC 10190 32 90.6 0 ..........................C.C..T | T [10218] ========== ====== ====== ====== ================================ ==================================== ================== 35 32 99.7 35 TTCGCTCCCTTCACGGGGGCGTGGATTGAAAC # Left flank : CAGCATTACACTCCTTTTTTGGTAAAATGACATGCTAGTATTAATCACTTATGATGTTTGCGTCACAACGGATGGTGGTACTCGACGCTTACGCAGAATCGCTAAAGTCTGTTTGGATTATGGGCTAAGAGTACAAAACTCTGTTTTTGAATGTGAGGTTGACCCTGCTCAGTTTGCTTTTTTAAAAAATGAACTGCTGGATATTTACGAGCCTGACTCTGATAGCCTACGCTTTTATATGCTGGGCAAAAAAGGACGCCAGCGTGTGGAGCATTTTGGCGCTAAAACCACGGTTGATGTACTTTCTGACTCACTTATCTTGTAGTCCGCTAACCTATTGTTCTCATAGAATCTCTTGTCTTTAGCGGAAGGCTAAGCAACTGTTCTTTAACAATTTATTTAATGATTATTGCCGTGATTGTATTTTTATGGTTTTGATTTTTTATGTTAGCGGATATTTAAGTATTTGCCGCGTTTAATCATAAGGTTAGAATGACGGC # Right flank : TAGGAAAATACACGGCAAAGGTCATCAAACGGCTAAACAATATGTCTATACCGGCACCTTTAATAACAATCAGGAACATGGGCAAGGCACAATTATCTTAGCAAGTGGTGGGCAATTTATTGGTTAGTGGGTTAACGGAAAACCAATCCGCTAAGCAAATATCTCTTTCAAAAAGCCAGTCATCCGCACCCAAGCTTTATCTGCCACTTCCGCATGATAAAAGTAGCCTGTTTCGCGGTTACTGGCCTCCGGTTTCATAAACGCATGACCAGTGTGTCCGTAAGCATCCAGTTCCCAATCAGCGCCTTTCTGCGTGAGTTCTTCAGCCAGTGCCAGCACAGCTTCAGGCTTAGCCAATGGATCATCCCAACCATGCAATACCAGTAAGGGGGTACTAATCGCCTGATCACGATTAAAATCAGGTGCATCCAATACCCCATGAAAGCTCACTGCACCCGCAAAACTGAGTCCTGAACATGCTAAATCCAGCAGACATTTGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCTCCCTTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20850-20472 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKM01000096.1 Leucothrix pacifica strain JCM 18388 JCM18388_1__paired__trimmed__paired__contig_96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 20849 36 100.0 30 .................................... GCCAACAGACGCCAGCTTCCGCTTCATCAA 20783 36 100.0 34 .................................... GGCACCTTCCATGACACTTAGATCATGTAACGCT 20713 36 100.0 33 .................................... CGCCAGTTGTTAATATCATTCCATTATCTTGCT 20644 36 100.0 33 .................................... CCCTGAGGGATTAAAGGCGCTGATAGAAAATCG 20575 36 100.0 31 .................................... GATCTTGTCTATCATTGTGCTCAGCGATACG 20508 36 97.2 0 ..................................C. | A [20475] ========== ====== ====== ====== ==================================== ================================== ================== 6 36 99.5 32 GTGAAAATGGGTACCTGATGAATAAGGTATTAAGAC # Left flank : CGTCTGGATGGTTACCTGATTAATAAGGTATTAAGACTTGGGTTAGACCACGTGTAACGGAACTTTTAAGTCTGGATGGTTACCTGATTAATAAGGTATTAAGACCATGATAAGCTGGTGCTTCATACGTATAGCGATGTCTGGATGGTTACCTGATTAATAAGGTATTGCGACACGACAAAGAACACAGTCTTATCGATGACAGCCTTGTATGAATGCTTACCTACAGATCCTCCAATAAGAAGTCATCATAAGACTATGCAAATAGATCAACTTTTTGGGCAGCACTTCCCTTGAGCCACTTTTCAATTTGCAATTAATGTTTGTTATATTTACAGCGGATCAGATATGTAGCACTATGAGTAGAAGGGTTGTGTCATTCAACACCATACACCGCTATTTAGGAGTATTTTTGTTAAAACCTAGCTTCTTGCAGGGCATAATTTCCGCTAAGCCCCTTTGTAAGTATTTGACTATAAAGGCTGAAATTGATGCTTGCA # Right flank : CTTCTAGTGTTTTTTCACTGCAACTGCCAACCCCGATCCGTTCGCATAAACCGGTTAGGCTCAACACATTCAAAAGCATGTCCTGTCCATTCCATTTGCTCCATGACAAGTTCATGCCGATCACCTTTGATGACATTAAAACTATTCGGCTGATTGGCGATTAATCGGTGCGATGTGGTGGTGCCAGCGTGAGAAACAATCATACCATTGACCGGCTCGACGTATGCCAGATGCACATGCCCGCCCAGTATCAAATCAACTCCCGCTTCACTAAATGCCTGTAGTGCGTTGTCGCGATTGCCGACAAGGCTGCGGTTCAGGCTGGACTGCGGTAGCCAGAACGGATGGTGCGCGACGACGATATTGAGTGAATCGTCAGCGGTTTGCTTAAACACCTGACAGACCTGATTGATTTGGGACTGGCTAATGCGTCCGCGTGACAGGTCCAGATAAAAGCCAATTCGGCGTGCTGTGTTAACGCCCGCAGCGGTGAATTCGTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAATGGGTACCTGATGAATAAGGTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 21902-21176 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKM01000096.1 Leucothrix pacifica strain JCM 18388 JCM18388_1__paired__trimmed__paired__contig_96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 21901 36 100.0 34 .................................... TGTACTAGTTATAGCTGATTTAATTATTTCAATA 21831 36 100.0 33 .................................... AAAACTTTACATCGAATTTCCCTATGCTTTTTT 21762 36 100.0 32 .................................... TTGTTGGGGGAAGTAATTTGACCATTTTGGTG 21694 36 100.0 34 .................................... CAACTATTCATCGCGATAACCGCGGTAATCAATA 21624 36 100.0 33 .................................... CATTCTGTAGTGGCCCACCGCCAATTGGCTGCA 21555 36 100.0 32 .................................... AGACTCTCTGCCAACATCATCATACCGAACAC 21487 36 100.0 32 .................................... AACCGGCATTGTTCCATTTTCAGATATTGCAT 21419 36 100.0 35 .................................... GGAGCTCTATCATGAGCTTTTTTTCCCTGAGTGTC 21348 36 100.0 32 .................................... TTGGGTTAGACCACGTGTAACGGAACTTTTAA 21280 36 100.0 33 .................................... CATGATAAGCTGGTGCTTCATACGTATAGCGAT 21211 36 94.4 0 ...............................GC... | ========== ====== ====== ====== ==================================== =================================== ================== 11 36 99.5 33 GTCTGGATGGTTACCTGATTAATAAGGTATTAAGAC # Left flank : AGGAAGGCAAGGTGCTGGAGTCCTATATGCCATCGAGTTTGCCATCTGCCCCGAGTGGTTCTGGCGTGATTGTTTCCAATGGAGCATGGGATAACTCAGACGCTGGTAAGTGGTTACGTGATACCGTGACAGAGATTTCTGAGCGTACTAACTCACCTGTGAAAAACGTGCTGCATGCTAAGGGGTTGGCTGAACAGTGGAGTTTACTGGAAGATGCTGAGTTGAAGCAGGCTGTTTTGGTTCAGATAAAAAAATATTGGCAGACTCAAGATTGGTGGGGTGAGCCTCATGGGAAGTCTGCTATTAAGGCGCATCGCATTTATAGTGCTGAGTGAAATAGTCATTTAAATGCAGTAAAATAGAGGTGTGATACGTGAAGTATTAGAATAAATGCCATTAATAAAGCGTCAAAAAATAGCTAAGTGCTGTATATCTCTTTTGATATATATAAAATTATACTGTAAGTCATTGATACGGTTAATTTTTTGGAAAGTGAGAGG # Right flank : ACGACAAAGAACACAGTCTTATCGATGACAGCCTTGTATGAATGCTTACCTACAGATCCTCCAATAAGAAGTCATCATAAGACTATGCAAATAGATCAACTTTTTGGGCAGCACTTCCCTTGAGCCACTTTTCAATTTGCAATTAATGTTTGTTATATTTACAGCGGATCAGATATGTAGCACTATGAGTAGAAGGGTTGTGTCATTCAACACCATACACCGCTATTTAGGAGTATTTTTGTTAAAACCTAGCTTCTTGCAGGGCATAATTTCCGCTAAGCCCCTTTGTAAGTATTTGACTATAAAGGCTGAAATTGATGCTTGCAGTGAAAATGGGTACCTGATGAATAAGGTATTAAGACGCCAACAGACGCCAGCTTCCGCTTCATCAAGTGAAAATGGGTACCTGATGAATAAGGTATTAAGACGGCACCTTCCATGACACTTAGATCATGTAACGCTGTGAAAATGGGTACCTGATGAATAAGGTATTAAGACCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGATGGTTACCTGATTAATAAGGTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 1282-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKM01000018.1 Leucothrix pacifica strain JCM 18388 JCM18388_1__paired__trimmed__paired__contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 1281 36 100.0 34 .................................... AAGTCAAAATAACTCCAAGCCCTAATTGCTTAAT 1211 36 100.0 32 .................................... TTTGGGTATATCTCTTTTGCAGAGGCATTTTT 1143 36 100.0 32 .................................... TTCATAAATGAACGCCATAATGAAATTCGACG 1075 36 100.0 33 .................................... GACACTCAAAGAATTTTTAAGAAAGGAATCACC 1006 36 100.0 34 .................................... ATTGCTAACAATGTTGATATGATAAAGCTTACAA 936 36 100.0 34 .................................... CAAGGCCATTAACGAATAATGCAACAGTGAACCC 866 36 100.0 34 .................................... CATCTTTAAAACATGAGAATCTCCATTCCCATTT 796 36 100.0 34 .................................... ATCCCCGCCGCAACGAGGATGCAAAATGGATCTG 726 36 100.0 33 .................................... GGAACTCCCGGTGTCGGACCACCTGGTCTAACT 657 36 100.0 35 .................................... TTACTTATTCAATACCCTTTTTTTAAAATTTTCAG 586 36 100.0 35 .................................... AATACGCATCCAATTACAATAAACATGCCTCGCCC 515 36 100.0 35 .................................... CACACTATTATTAGTGCTAATAAAGAATTTTTAAA 444 36 100.0 32 .................................... GCCCTTGCATCTCATATTTATCCATTGAGATG 376 36 100.0 34 .................................... TTTCAAAAACATTTCGTTCTAAAATCAATGGAGC 306 36 100.0 35 .................................... ATTAGAAAATGCGATTGCTCCAACTGTAAGTCCTG 235 36 100.0 34 .................................... AATCGCAACTGTTCCGTTACACCCCGCAGGTATA 165 36 100.0 33 .................................... AAATATAAGGTCTATCTTGGCATTCTAAATTCT 96 36 97.2 0 ................T................... | ========== ====== ====== ====== ==================================== =================================== ================== 18 36 99.8 34 GTCTGGATGGTTACCTGATTAATAAGGTATTAAGAC # Left flank : TCAGGTTGATGACCCATGCACCTTGAGGATGTATAGAGCGCTGGAAATTGCTTGTTACTTATCACTATACCGGGTCAGTGACGGACGTGTTGTTCCTATCTTTCAGCAATACCATCGGCAGTTGCTGGTAATCATTGATGATTTAATGGCTATCCAGCATGATAAAGTGCCCGGCAAGTGTTTTGTTGAAGACTGTAGTAGGGTGTTTGATATTATTGCTGACATTGAGAAAATTTGTGCCAGTAAGCTCTATGAAAGACAACAAAAAAAGGCAGCTAAAAAAAGTGGTTCGGTGCTTCCTTATGATGCCTCGCAAGGTAGATCAACGGGCTAGTTTGTGTTTTTATGTTGTGGAAATAGTGTTCATTTAGTAGTATAGAACCGGATGTTTTAATGAGAGTATCAAGCCAAAAAAACACTAAGTGTCGTATATCTCTTTTGATATATAAAAAGGGCAGCTGTAAGTGTCTGATACCATCGTTTTTTTGGAAAGTGGCAGG # Right flank : CGCTGAAGCAGATACTGATACAACCAAAAGAAGAGTCTGGATGGTTACCTGATTAATAAGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGATGGTTACCTGATTAATAAGGTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 8753-7896 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKM01000018.1 Leucothrix pacifica strain JCM 18388 JCM18388_1__paired__trimmed__paired__contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 8752 36 100.0 32 .................................... CGTTTCCATGAATTTCTTTAAAAATTCACGGT 8684 36 100.0 32 .................................... GTTGGCGCCGTTTGATACTCTGACTCAGGAAC 8616 36 100.0 33 .................................... TGCCTTGGCTTGAATAGTGCTACCTCCATCACA 8547 36 100.0 32 .................................... CCAACATAATGTGGTGCTTCAGCAGAAACAGC 8479 36 100.0 33 .................................... AGAGGAAAAGTTAAAAATGTAAAAGCTGCTAAA 8410 36 100.0 32 .................................... AATCGTGGTTCACCATTTGGCTCCACAAAATA 8342 36 100.0 33 .................................... AAATAAAACCCGGTGATTTCGCCGCATAAAATG 8273 36 100.0 34 .................................... AAGACGGCATATTCAGCTACTTCATCAATACTGC 8203 36 100.0 31 .................................... GAATTAAGTTGTGATCCTCATACTTGATCAT 8136 36 100.0 33 .................................... GATTCCCCAGTATTGGGTTTTCCCTTCAGCAAG 8067 36 100.0 33 .................................... CTCTAGCATTGCACTAGAGAGGAGGAAACCAAG 7998 36 100.0 32 .................................... GACCTGAATAGGTCCTTCGTATAGAGTAAATT 7930 35 83.3 0 ............................-.G.CCTA | ========== ====== ====== ====== ==================================== ================================== ================== 13 36 98.7 33 GTCTGGATCGTTACCTGATGAATAAGGTATTAGGAC # Left flank : GATAACGTCGGCAGTGGTAACCTCTACAAACTCACTTCGTGGCGCATTCATTCCAGGCAATAGCTCTTTCTTAAGAGCAGTCCAACTGTGATTGTTTTGGCGCGCTATATGTATTTGAATTAGATCACAGAGATACTCGCTAGCAGTTTCATACAGTCCTTCTTCAGCGGTTTGTGTGCGAGTAAATTTCTTTAATCTACCTGATATTTTTACCTTTGCTTTTAACATATCATCGTTACCTCATTTGCCCTTTATGAAGTTAACAAGAAGATCTACAATAATACAAGCAAGAGAAGTGACCGAGATAATGCGATAGGTCATTGAATGGGGCTGGCTTGTGGTTTTCTGTTGTATAAATTGTGTTCATTTAGTAGCATGGAATAGGAAGTTTGGATGAGAGTATCAAGCCAAAAAAACACTAAGTGTCGTATATCTCTTTTGATATATAAAAAAGGCAGCTGTAAGTCTTTGACTGAGATGAGTTTTTGGGAAGTGACAGG # Right flank : TCCAATCCAGACAGCTACTCACTTGGTTTAGGTAACTTTTTTCCCAAAAAAACCAACTTGGGGCTACTACGTGCAACACAAGTTTTAAGCGGGTGTAGCTCAAGTCCTAGCTGGTTCAAACGTTGCTCAGCAAAGTCCTTAGCACGTAAGGCATTACTTTCACTATTCGTGAACAACAAAAAGTCGTCAGCAAACCTTACAAACGGAATATTGGCTCGTGTCAAAGCGATGTCGAATTGGTGGAGATAAAGATTACAAAACAGTGGTGATAAAATCGCTCCTTGCGAGATACCTTTGCGAGTGCCAAGCAAACTGCTCTGATGTGCCCCTGCTTTGAGCCACTTTTCAATTAGCAGCATTGCTTGTTTATCGGATACAAACTGCTTCAAGATTTTGATTAAAATTCTGTGAGGGATGTTGTCGAAGAAGCTGGTGATATCAGCATCGACCAGCCAGTCCTGACCAATTCTGATTCGCTCTCTCACCTTAGCCATTGCCAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGATCGTTACCTGATGAATAAGGTATTAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 27618-26743 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKM01000023.1 Leucothrix pacifica strain JCM 18388 JCM18388_1__paired__trimmed__paired__contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 27617 36 100.0 33 .................................... GTTGCATAGTTCTTTTGTTCCTTCATTGTCGAA 27548 36 100.0 32 .................................... GTGAAACATTTCCTTGTATTCAATTACTCTGT 27480 36 97.2 34 .......C............................ ACGTAGTGGTATCCGATGACTCAACCTAGCCTGG 27410 36 97.2 35 .......C............................ CTTTAGGGCTTAGAGGTTTAACCGAAGTCAAGATT 27339 36 97.2 36 .......C............................ ATTATCCCCTAATGGGTTTATATGGTCTATTAGTGC 27267 36 97.2 32 .......C............................ CCCTCATGATTCAAGATTACGCTGCCCTGTAC 27199 36 94.4 34 .......C.G.......................... GGGGATGGCTTTGATGATTTCGCAGTCGTAGATT 27129 36 94.4 34 .......C.G.......................... CCTCTACCTTCTTCAGAAATAAAAATTGTTTTTG 27059 36 100.0 34 .................................... TGATGACTTCAGGGGAATAGCAGGCAGAGAATCC 26989 36 100.0 34 .................................... CGCCGCCGCCGCCGTCTCTTTTTCTTTAGCTGAT 26919 36 97.2 33 ............................G....... CTGTGCGCCAAAACCTTTATCGAGTAGGTCTAG 26850 36 100.0 36 .................................... GTTAACGGGATTGTGCTTAATCCTTCTGCCAGCTCT 26778 36 88.9 0 ...............................CCCG. | ========== ====== ====== ====== ==================================== ==================================== ================== 13 36 97.2 34 GTGAAAATGATGCCCTGATGAAGAAGGGATTAAGAC # Left flank : CACTTGGGACACGCTCGACAAAATCGGCATTGTCGTCGGTATTTTTACCGGATTAATTTCTCTGATGATCTGGGTATACCTGCTACGCAATGAAAAGCGCGACAACGATCTGATTGCGATTACCCTGCATGTACCAGAGAACAATTTTAGTGCCACACTACCGGGCAAAATCCGCCGTAAAAACCTTACCCGCGCGGAGCTTCAGGGCTTGCTGGGGATGTTGCCCATGCAGGAGGCTGGTAAGCGTTACCAAATCCCGGCATTGAATGATCCGGCGTTTTTTGATGGCTTGATGCTGGCGCAGGTGGATCGGGATATTCATGAAGTTGTGATAGACTGTGAACCAGAAGATTTGCAACAATTTAACCAAACACGTTTAGCGCAAGTTTGCGTGTTGAATCAGGAGGTGAAATGAGTGAAACCTAGCTTTTTGGGAACGCAAAATCCCGCTAAGCCCCTTTGTAAGTGGTTGATTGCAAAGGCTGGAATTGATGCTTGCA # Right flank : AAGCTTGTGAACCGTGACAACGTAAGGTGATATCGTTACGCTCCCAATATCGAATCATTCAACAAGCGAGATTTTTCATGACAACGTATTTCATTTCCCGACACCCCGGTGCAGTTGAGTGGGCAGAGTCCGAGGGCTTTCATGTTGATGAGCGTTTAGCGCATTTTGATGTGACAATCGTGCAGCAGGGGGATCGTGTATTAGGTACATTGCCGATTAATCTGGTTGCTGAGGTAAATGCACGGGGTGGTCAGTACTTACATCTAACGCTGGAGCTTCCGTCTGACCGCAGGGGCAAGGAGTTAACCGCGCAGGATATGCGTGAGTTTGGCGCGCGCTTGGAGCCGTATCAGGCAACAAAATTATCAGGATCATAACCATGGAGACTCTGAAGTTGCCACTGGCTCAGTATCGGGTACATGCGCGTGCCTTAAGTACGATTCAACTGCCTGCTTACACGGGGTCGGCCTGGCGTGGCTTGTTTGGTCATTCGTTAAAAT # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAATGATGCCCTGATGAAGAAGGGATTAAGAC # Alternate repeat : GTGAAAACGATGCCCTGATGAAGAAGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 40602-38789 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKM01000023.1 Leucothrix pacifica strain JCM 18388 JCM18388_1__paired__trimmed__paired__contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 40601 36 100.0 32 .................................... CATTTGTTCTTTAATCCATCCGCGCGGTGCTG 40533 36 100.0 33 .................................... GACTAAGATCATAAATATTCTCGGTCGCTTTGC 40464 36 100.0 32 .................................... GCTACTAAGACCAAAAGCCGCCATTGCCGATT 40396 36 100.0 31 .................................... CCTTAGCTTGCAGTATGTCACTATATTGCTT 40329 36 100.0 33 .................................... TACTTATTCCGCTACGTGTAACCAATACTTAAG 40260 36 100.0 32 .................................... CTGAACATTTGCAGCGTAGTCTTGACGGTTGG 40192 36 100.0 31 .................................... GCTACGTGTAACCAATACTTAAGAAGCTCAG 40125 36 100.0 31 .................................... CCGGAGCCGTCGCCGGAGCCGTCGCTGGAGC 40058 36 100.0 31 .................................... GTGGTACCACCATCTTCGTGCATTTGTTAAA 39991 36 100.0 34 .................................... CAAACTACATGATCGTTATCCATCCAAGTGACAG 39921 36 100.0 31 .................................... ATTGTCAGAAACCAATGCTGCCTGCATTAGG 39854 36 100.0 33 .................................... CACTGTCAAATTATTCTTTTCTGACAGAGTATT 39785 36 100.0 33 .................................... TATATTACAAAACTCATAACTTTCTCCTATTTT 39716 36 100.0 34 .................................... TTTTCCTCTGCAGCAGCTTCAGCCTTTGCTCTGG 39646 36 100.0 34 .................................... CCAGAAGTTTAAACACTTTTCAGGTAAAACACGG 39576 36 100.0 32 .................................... TTAGCTGCCATACCTCTACGTCAGGATCATAA 39508 36 100.0 32 .................................... CTGACTTCATAATCACATCGCCTACCGAAGGG 39440 36 100.0 33 .................................... AGTTTAGCCCCCAGCACTTCCGCGTGCGCGAGT 39371 36 100.0 33 .................................... TGGCTCGACGGTGTAGATACCGCATGGGTTAGG 39302 36 100.0 33 .................................... AAGTTGGAAAGTGTTTAGAATGTAAAGGCAGCA 39233 36 100.0 34 .................................... ATGTTGAACGCATTATCGTTCTGTGTACTACCTT 39163 36 100.0 30 .................................... GTCAAGCTTACCTGTTTCTTCTAACCATTC 39097 36 100.0 31 .................................... ACTGCGGTAATCAAACCTTTCTTTACATAAG 39030 36 100.0 33 .................................... TTGCCAGCCATTAGGCTTTCCCACTTCTCTACC 38961 36 100.0 32 .................................... GTTATGCGCTTACAGACTTATTGCCAACTACA 38893 36 100.0 33 .................................... CTTAGGATGTTTTCAATATCTTCAGGTATATAC 38824 36 97.2 0 ...........A........................ | ========== ====== ====== ====== ==================================== ================================== ================== 27 36 99.9 32 GTGAAAACGATGCCCTGATGAAGAAGGGATTAAGAC # Left flank : TGAATGCAGATGAGGCTGTCCTCTGATTCATTAATGATCATGGATAATGTTGCCAGTAAGTCGCCGCGTTCGGCGTCGGTCATCCAGCACTCGTGTACGGATTTTTGTCCGCCGGTGGCAAAGCTTCGGGTCGCTTTAAGCGCTGCCCTCAGGCGCTTTGGTTGGCGGATATCATAGGCAATGAGGTAGAGGTTGCGATTTTTCATGTGCGTTAGTGTAGGCACGAACGACGGGATAAGGGGAGGTTTACAAGCTTGTAAGTGGGGCGTTCAGCCGTGGTGTTTATGTGCTCACACAAGCTTCGCTTGAAATGATTCACTGACAAGCTTGTGGGGAGTGACAAACGGTGGTTTGTTGGTGATAATGAGGGCTTGGTATTTGTGGTCTGCAGATACAACGTTTTGGTGAGTATTTGGTGAAACCTAGCTTTTTGAAAGTGAGAAATCCCGCTAAGCCCCTTTGTAAGTGCTTGATTGCAAAGGCTGGAATTGATGCTTGCA # Right flank : TCTCGGTGATGTCTCAAGGGGTTCACTCGTGATCAGTAGCGGGCGCTTGCGGGGAGATGTCTGGCGCTTCATGGCTGACGTATTCTGCGTCTAACGACAACAGCGCGGTAAATGCATCCTCGTTGACTTCACCGAGTATTTGAAACAGCTTTTCATACATCGTGTCTTCCAAGTGCTGCAACATCTCAGCGTACTCAGTAGCCGCCAAAGTAAACCGACAACCATCAAAATCAGGACGAGTGCCGTCATCAGTAAAAGCTGGGGTAAGCATTAGCGCGCTTGCACCACGTTCCAGATCGGAGAGTTGATAGGTCAGGTTTTCTTGTAAGTGATGGCAAATCTCCGCAAAGCAGATATTCCGAAAAAAAGTCGGATGGCTCAGCATATATCGGGCGATATCATGCACAACAATTTTCTCTGGCAAGCGTATGTGTGGCTTTGGGCCTTTGCGCAGAAAATCGGCATAACACGCTGGCGTGTGCATATTGTGCCGCTGTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAACGATGCCCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 38592-37124 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKM01000037.1 Leucothrix pacifica strain JCM 18388 JCM18388_1__paired__trimmed__paired__contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38591 28 100.0 32 ............................ TTCGCCTCATCCGGCAAGCTATTAAACTTTTT 38531 28 100.0 32 ............................ GACCGCGTCCAAGTCGAATCCAAGCTCCCAGA 38471 28 100.0 32 ............................ TGTCGCAGAGTGGAGACGGCAATTTTATGCAA 38411 28 100.0 32 ............................ CAAAAGGACACACCAGAATTCAAAGCAAGCGC 38351 28 100.0 32 ............................ TAAAGGACAACTCACAAAATCACATCTCTAGA 38291 28 100.0 32 ............................ ATTGTAAAACCTGATGAGGCTGAGTCGATGCT 38231 28 100.0 32 ............................ TGGTAGCATTTTTACGTGCGCTCGTTGACAGC 38171 28 100.0 32 ............................ CTGCGGTGTCGTGTAGGTTAGTATTCTATGTC 38111 28 100.0 32 ............................ TGTCTCAAACGAACCAGAGAGCAAGCCATTTT 38051 28 100.0 32 ............................ AGCCTGCGGGGCTTGGCCAACGTGGTGATTAA 37991 28 100.0 32 ............................ TGTATCACTAAACGCCTGCAATGCCGCAATCA 37931 28 100.0 32 ............................ ACAACGTCGCGACATCGGCATCAAACGTGGCC 37871 28 100.0 32 ............................ AATGCCGTTTGCGAGAAAGCGAAGCGCAGGTC 37811 28 100.0 32 ............................ ATACTCAGCCGCCAACACCGGATAAGCCACTA 37751 28 100.0 32 ............................ TTGCCAGCGTCAGTGACTTAACCAGCCTTAGC 37691 28 100.0 32 ............................ TTGGACTTTGCGAGCGCCTTTTGTTTTGTAGT 37631 28 100.0 32 ............................ CTTGAAGTCTGGCGCATTCATTCGGAGTCAGT 37571 28 100.0 32 ............................ ACCGCGCGCTTTAGCCGTACCCAGCTTGGGTG 37511 28 100.0 32 ............................ AATACCGGCCAAACTATGCGCCTGAGACTTAT 37451 28 100.0 32 ............................ GTGAAATCCGTTCAGGGCGATATGTCGGAAGT 37391 28 100.0 32 ............................ TGCAGTTTGAAAAAAATCCGAGTGATAAATTA 37331 28 100.0 32 ............................ GATGTGCCGGGGGGCAAGTTCCGGCTGTTAGA 37271 28 100.0 32 ............................ TGCCAGCTGATCCAACGGGTATGCATCGGCGT 37211 28 100.0 32 ............................ TGCTTCTGTAATCAAAGAAGAAGTAGATGAGC 37151 28 92.9 0 ...........A..............G. | ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.7 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : GATGGTCGTAATAGGTTGAACGTGTAATGCCAAATACCTGACAGACCTTGTCAATGGGATAGCGCTCTCTCAACTGGTCTATCATCTGGTACGATTCCAATCGTCCGACATCAAGAGAGCGGTAGCCTTTTTTAATATCTCCTTCTCTTGTTCGAGTTGCTTTACTTGCTTTTCAAGTGCTTGGATTTTTTGCTGTTCCGGAGTCATTGCATGGGTGATTGGTGTCACGCCACCTCGCTCACTTTGAAGCTGCTTCATCCATCGTCTAAGTGCAGATTCACCGACATCCAGAGAACGGCAGGCTTGTGCGACTGAATAACCTTGGTCTAATACCAACGCTGCTGCATCATGTTTAAATTCTGTCGTAAAAGTTCGACGCTGTTTTTTCATTTAACACCTCACTGAAGGTGGATTTTACCACCTATGTTGGTGTCCGGTTTTATTAAACCACTACAGGCAGCTTAGAAAAGGAGCTCGGCATCGTTGGCCCCAGAGAAGCG # Right flank : TACTACTTCAATAATTTCGAGGAACTCACCAGTCCCATAAAAAACTAGTGAGTACCCCAAGTCGACTCTAATCAGCGACTTATTGCTTTGGCAACATCACAGTATCAATAACATGAATCACACCATTTGATTGCTTAACATCAGCAACAGTCACCGTAGCGACACGGCCATTTTCATCCGTTAGCATAATCTTGTCGCCGCTGTAACTTGCTTGTAACACGCAACCGCCAAGTGTTTTAACCGGATGTTTGCCGCCGTCATCATTGATAATGCCTCTAATGGCCATTGACATAGAATAAATTTAAATCAGGCTTAAATGGCCTGAATGGTTGCCGTTACGAGCACGGTACCAGTAGGGCTGCCCGTCGGTGATCCGCCCAGTGGCTCATCACTTAAGGCCAGGGTTGCGCCGTTTAATGACTTGGCAAGTGCTGGTGCAATCGTGATTGCTCCTTTTTTAAGGGACGACATCACGCCTAACGATACCGGCGGCTGATCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45935-39902 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKM01000037.1 Leucothrix pacifica strain JCM 18388 JCM18388_1__paired__trimmed__paired__contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45934 28 100.0 32 ............................ GCTATAAACAACGCCATCAAGAACGGTTCATT 45874 28 100.0 32 ............................ TGAGCCAAGTACATCCCAGAGTGCCGATTCAT 45814 28 100.0 33 ............................ TATCAACATCCGAATGGATAGAAAAAGCCTTCT 45753 28 100.0 32 ............................ CAAACCGCAGTAAAACCTGTCGCCCAAACGAA 45693 28 100.0 32 ............................ TGAGAAAGAAGATCCCAAGAAAAAATGGATGG 45633 28 100.0 33 ............................ GCATCGGCGGTGCTCATACCGCAGCCTTGTATG 45572 28 100.0 32 ............................ GCATCAGTGAAAAACGTCTGAATTTGCTAGAG 45512 28 100.0 32 ............................ CAGCAGCAAAGCCCGGCACCAGCTACAACAGC 45452 28 100.0 32 ............................ GTGTGTTTTGTCATGTAAGCAGCCAGGTCAAA 45392 28 100.0 32 ............................ AATGGCGTCACTCACGTCATGAGCAACGCTTG 45332 28 100.0 32 ............................ TACGATTAATAGTGTGTTGGGGCATGAGGAGC 45272 28 100.0 32 ............................ TTCTGAAAAAATTAATGATTACTTACGGCAAT 45212 28 100.0 32 ............................ TTCCTGCGTTCCAACTTTGTTGGGACAAGAAG 45152 28 100.0 32 ............................ TCACGCTTGGCCTTATGAATATCGGTTTAAGA 45092 28 100.0 32 ............................ GGGAACAATGGTGGTTCGTTTGGTGGGTATTG 45032 28 100.0 32 ............................ AACTATCGGTGTTGGGCATGTTTGCAGTCAGT 44972 28 100.0 32 ............................ AAACGATGGGCAGCGAACAAGGCATCACCCAT 44912 28 100.0 32 ............................ AAAACAACAAGCAAGGTACCCAGCTGGACTTA 44852 28 100.0 32 ............................ ATCAACCTCTGCCACCAACGCACCGTCTAATT 44792 28 100.0 32 ............................ TTTAAAGTCTGGATCTTGCGCTGTTCCTACCG 44732 28 100.0 32 ............................ GTAGCGGCATTATTTGCCCCTACCTGATCCAC 44672 28 100.0 32 ............................ ATCAATATGACGAATACTCGTTGGACGATTAA 44612 28 100.0 32 ............................ ATCGTTACCACCATTCATAATCATGGTTAGAA 44552 28 100.0 32 ............................ TCTTTGTCCGTTCCGATTTCTTTTACTACTAC 44492 28 100.0 32 ............................ ACCAAGTCCTGAAACATTCTATGAATATCCGC 44432 28 100.0 32 ............................ GCTAACTGCTGCAGACTTTCTTTTACATCTGG 44372 28 100.0 32 ............................ AAAGCATTGATGCTTCCGCCTCGCCACTCATG 44312 28 100.0 32 ............................ ATCTGGCTAAAACTGGTCAGCCCCAGCATTAC 44252 28 100.0 32 ............................ GATCGCGATTTTCGTAATTTCATCGAAAATCG 44192 28 100.0 33 ............................ AGGGATATATAAACCGGGCCCAGACTTATCGAT 44131 28 100.0 32 ............................ ACTTGGCAATGCCTGTTGTTACTGAAATGGGT 44071 28 100.0 32 ............................ TGATCCAGGTGGTGACCCTAAGAACTTTCATT 44011 28 100.0 32 ............................ GACAGGTGCCCGCTCACGCTTGCGCATACGGC 43951 28 100.0 32 ............................ TACTGTCTGGGTCAGTCGGTTCAGTACTCTCA 43891 28 100.0 32 ............................ AAAAACCGGAGCAGCGGCGCATGTTGCGTCGA 43831 28 100.0 32 ............................ TATGCACTAACAACCGATCGATATTTAGTATC 43771 28 100.0 32 ............................ AGTGCAGCTACTTTCTCAGCGTCCAGCTTTTT 43711 28 100.0 32 ............................ CATCGTTCCCGTTTTTGTCCAAGTCGTACCGT 43651 28 100.0 32 ............................ AATAGCTCACTGGATTCGGTGGGCGATAGCCT 43591 28 100.0 32 ............................ AGTGCAACGAGTCCAGACATTCCCGCTAAAAT 43531 28 100.0 32 ............................ AGTGTGGTTTGCTTGGCATGATCTGCTTTGTA 43471 28 100.0 32 ............................ AGAATCTAACCGAGAATTCGTACCTGCCCACT 43411 28 100.0 32 ............................ TGAGATTAACTTTTGAAAAAAGTCTTTCAATG 43351 28 100.0 32 ............................ GTTTGCTACATAAGCGCCAGCCTTAGCCAGCC 43291 28 100.0 32 ............................ CATGCCAAGAGGCAACGCACTCACACCACCCA 43231 28 100.0 33 ............................ TTACCACTTTGTCGCTAATACGTTGGAGTCGTC 43170 28 100.0 32 ............................ GTATGCAAATTGTTATCGTGAAGGTAACGAGA 43110 28 100.0 32 ............................ AAAGGAACACAAACATGAACAATCAACATATT 43050 28 100.0 32 ............................ ACGAACAATCACTAATCACGCTCGACCGAAGA 42990 28 100.0 32 ............................ ATATCCATGTGATTTTGTGTCAGCTCGGTAAT 42930 28 100.0 32 ............................ GCTCTGATCGGGTGGCTTATCATGGCATCCCC 42870 28 100.0 32 ............................ CTGATTGCCTTTTATGAAGCAACGGGTCAGGA 42810 28 100.0 33 ............................ ATCAAAGAACTCAAGGCAAACCCCTTACTGCCT 42749 28 100.0 32 ............................ GCACGCAGAGAGCTTAATCAGTTGCTCACTAA 42689 28 100.0 32 ............................ CGCCATTTTCCTGAGTACAAGCAATATAAACA 42629 28 100.0 32 ............................ ATTAACTGAATATCAGTGAACCGTTGCATAAC 42569 28 100.0 32 ............................ ATTCCTGACGGTCATCGGGAATGGCTCCATTC 42509 28 100.0 32 ............................ TGAAAGCATATTCAGCCGGTGGTATTTCTGGT 42449 28 100.0 32 ............................ TCGGTGCTTCCAAAACATCGCGCAACGACCCG 42389 28 100.0 32 ............................ TCCACCAGTTTGGGTTTAAATGCTTCAGCAAT 42329 28 100.0 32 ............................ ATTCACACCAATCAATAAGAGCTAAGCATGAA 42269 28 100.0 32 ............................ AATCAGCAATATATCAATCAGTCCGCCAGTTG 42209 28 100.0 32 ............................ TCCTGTTTTGGCTCAGCTGTTACTGGCTTTCG 42149 28 100.0 32 ............................ TCAAACACTACAAAGGCGAACTACGCGGCAAG 42089 28 100.0 32 ............................ CAAAGCGACAAACCTTCTGTCATTCCTTCCTG 42029 28 100.0 32 ............................ ACCCTGAATTAAGCTACCCATCAACCCGCCCT 41969 28 100.0 32 ............................ TCAACCTCCTCAATCTCCCCAATCGACACCCC 41909 28 100.0 32 ............................ AGCCTGCGCCGAGTTCGCCGCCATGTTTCGCA 41849 28 100.0 32 ............................ ATAAGAGCAGACAAGCTTTCAGAACTGGATAA 41789 28 100.0 32 ............................ ATCGTCATTGCTGAGCCGACGGTCACTTCAAT 41729 28 100.0 32 ............................ GGTTTAGCAGTACGCCAATTAACGGCGATTTG 41669 28 100.0 32 ............................ ACTACAAAGATTAAACGCAAGATCAGGGAGAA 41609 28 100.0 32 ............................ ACCAGCTCAATGCGCACAGTATCGCCGGACGG 41549 28 100.0 32 ............................ TTTAGGTGCTTTATTAGCCCCTCCAGCCTCTC 41489 28 100.0 32 ............................ TTTAGGTGCTTTATTAGCCCCTCCAGCCTCTC 41429 28 100.0 32 ............................ AATCCGTGCGTCAGATGGCGAATTGAATTATG 41369 28 100.0 32 ............................ ATTGACGCTTGTCTTCTTCAATAAGTGCGTCA 41309 28 100.0 32 ............................ GCCTCCGAATATGTCGATCTGGTTTTGTATTA 41249 28 100.0 32 ............................ ATCAAGGCAGATCATATTCCCGACGATGGGAA 41189 28 100.0 32 ............................ ACTCACCGACATTGCCATCAGGCAAGCCAAGC 41129 28 100.0 32 ............................ AGTAACTGGTGAGGCTTTAGATCAGTCGCTTC 41069 28 100.0 32 ............................ CATAACGGGGTAAATTTATATGCTCTATTACT 41009 28 100.0 32 ............................ GTCAACAGCACTTATGAAGACCACTACAAAGA 40949 28 100.0 32 ............................ CGACGCGGGATCTGCAACGAAAGCACGTCATG 40889 28 100.0 32 ............................ AGCGGAGCTTACCAAGCTCTATCGCTATCTCG 40829 28 100.0 32 ............................ GTTCCGTGCATTCCGGTGGCCGTTGGTAGTGC 40769 28 100.0 32 ............................ ATTGCCAGAACTTAACCGTCCCAGCAAACAAT 40709 28 100.0 32 ............................ ATCAGCAATAATACGCCAGCGCCAGCGATTGC 40649 28 100.0 32 ............................ TGCTATGGCGGTGTCGGTTGCGTCACTTACTC 40589 28 100.0 32 ............................ ATCATGTGTAAAAGTTTTGCCCACTTCATACT 40529 28 100.0 32 ............................ TTGTGGAACAAACTTCAGGTGGAGTCTCCTAT 40469 28 100.0 32 ............................ CGTGTTAGATGCTGCTGATTGATAGCCCGTGT 40409 28 100.0 32 ............................ GTCTGAAAGCATTATTTCGGTGCCTTTACCGA 40349 28 100.0 32 ............................ CGTAAACGTATGCACGTTACCGCCATTATTCT 40289 28 100.0 32 ............................ CAACCAGTCCATACCAACCAGCTCATCACCAC 40229 28 100.0 32 ............................ TTATGAAACAAATGCGCAGTCCGCCCCATCCA 40169 28 96.4 32 .........T.................. GAAGGAGGCGGTTGGACCGGTTGTGGGTTATG 40109 28 100.0 32 ............................ ATCTTCAAACGCTTGACGCTGGCGAGCTTCCG 40049 28 100.0 32 ............................ AGTTCCTGACGTTGTGCGGAGAACGTGCCGTT 39989 28 100.0 32 ............................ GCCGATAACGCCGTATAGGTATAAATCGAGAT 39929 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 101 28 100.0 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : GTTATGCTGTTTTTAGACGTTTGAACAAGAAGTCTAATATTGAAAAGTTAGCTAGACGACGAGCGAAAAAATTAGATATATCTTTAGAGGATGCATTAGCGTTTTTTAAGGATACGGAGCAAAGGCAGCAATCTGATTTTCAAGCTAGCGATTATCCGTTCTTTTGGATGACAAGCCTAAGTTCAGGTAGTAAATACCCTGTTTCGGTTGTGCGTGAGGATGTTGGGCATCATGAGACTAGAATTGGATTCAGTACTTACGGTTTGAGTCTGGAAGATAATGATCTTAGAAGTGCTGTACCGATATTTCGATAGTTTTTAACAGTAAGGTTTTGACCTCAAGGGAAAGTAGAAGATTTTAGCTATTTTACCCATTTTTTTGCTGGCTCTTTAACAACTCAATAAAATCAATAGGTTAGGATTTGGTGCTTTTTGGTTGGTAAAATTAACCAAAAAGCGCTAACTTATTGTTGTAATTAATTTTTTGGAGTTTATACTCCA # Right flank : GGCACGCAGCATCGGAGATTTACCACGCTTGTAGTGGTCAACTATTTCCGGACACATATTTAAGTTTTTCTTCTTTCTCTACGGGAGATAACCCGTCATTCGCTGCGTGGGGCCTGCGTTTGTTGTAATAAGTCATTAAGTACCACCCAATATCCATTTTTGCTTCGGTCATGCCCTGATAGCCCATTCCTGGAATCCACTCAGTCTTAAGGCTTCTAAATAAGCGTTCCATAGGCGCATTATCCCAACAATTACCTCGACGACTCATGCTTTGTATACAACGGTAACGCCACAGCCGCTGCCGGAATCGAAGGCTACTATACTGCGAGCCCTGATCTGAATGAAACATAACCCCATTCGGTTTCCCCCGGCGGTGATAAGCATCATCCAATGCCTTGATCGTCAGATCTGTATCAGCCTGTTCCGAGATCGCCCAACCGACAACCTTACGGGCATATAAGTCAATGATAACAGCCAGATAGACCCAGCGTGAGCCTGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 84085-76186 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKM01000004.1 Leucothrix pacifica strain JCM 18388 JCM18388_1__paired__trimmed__paired__contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84084 29 100.0 32 ............................. CCCCTTCTGGGCACGCCCCCTGCGGGATTAAC 84023 29 100.0 32 ............................. CCGGTCTGGGTGGCAACTTACATCGAGCAAGG 83962 29 100.0 32 ............................. TTTGGGCGGGTATCGAAGCCACGGCAGCCGCT 83901 29 100.0 32 ............................. ACTATGCAGTGCGGCGTTGTAACGATGTGTCA 83840 29 100.0 32 ............................. TGTGTGTCTGCTTCTTCGAGCGAGCTGCGGCT 83779 29 100.0 32 ............................. AACGCAGCGGTAGGCCAAGTCTAAGAGTCGCA 83718 29 100.0 32 ............................. ATAAGATGCCATTGCATCCTGGTATTCTTTAT 83657 29 100.0 32 ............................. CAATCGGTCTACTTACAACGCCAATAAGACAA 83596 29 100.0 32 ............................. ATTCATGAAACGGTTTGCGGTGTTGCCAGAGG 83535 29 100.0 33 ............................. TGCGCCCAGGTGAAAGTTGGGCCGAGCGCTGTC 83473 29 100.0 32 ............................. TTGAAATCATCTTGGGGCATGCTGAATCCAGA 83412 29 100.0 32 ............................. CAGGTTTAGCGGTAATCCATTGTCAGGCATGA 83351 29 100.0 32 ............................. CAAGTCAGGAGCCTTAAAGCGCGTACCAGAAA 83290 29 100.0 32 ............................. GAAATACCGGATGGTTCGGTAGATGCGATTAT 83229 29 100.0 32 ............................. ACTAGTCAGGGAAAAGAATCTCCTTGTTATAA 83168 29 100.0 32 ............................. CTTAATCCAACAGTTATAAATATTGAACGACA 83107 29 100.0 32 ............................. GTGAGCTTGCTACGGCTTACGGCTCATTGGGT 83046 29 100.0 32 ............................. TCTTCGTTTGGCATTTAAATGACCGGACGCTT 82985 29 100.0 32 ............................. TTCTGAAACGCCTGCTTAATCTCAGCATTCTG 82924 29 100.0 32 ............................. GTATCGGTATCGTCTGGTCATGGTACTGGGAA 82863 29 100.0 32 ............................. TTCTTTAGTCTGCTTATGCCGTGCAATGCGTC 82802 29 100.0 32 ............................. AAAATCAGTTTTGATTTAGTTGAAGATATGAA 82741 29 100.0 32 ............................. TACAACAATGAGTTTTTTGTAAGCTCCTGCCA 82680 29 100.0 32 ............................. TGAGCGTATGGATGTAAGGTTATCTATTGGAT 82619 29 100.0 32 ............................. CGTGACACTAATACCTGCTTGTTGAAGTGCTT 82558 29 100.0 32 ............................. GCATACAGGCCAATAAGACTGGTGCACGCTAG 82497 29 100.0 32 ............................. TGTCAACGCTGATCAAACCGCCCTATCCTCAG 82436 29 100.0 32 ............................. TTCGTTAACTGGTGGAATAACATCAGCCTGAA 82375 29 100.0 32 ............................. CTGGGTAAAAAGGTGTTGAACTGGTGGAACGG 82314 29 100.0 32 ............................. GCGCAGAGAATGTTTGAAGCAAAGCTGATTGA 82253 29 100.0 32 ............................. ACATTGGGGATGATTTGTTTGATGCCATGATG 82192 29 100.0 32 ............................. CCGCTGAACGAGTTCTTTAAGCTGTCAATCAT 82131 29 100.0 32 ............................. TTGATGACTACATTGCGAATGTGAATGCTAAT 82070 29 100.0 32 ............................. GCAGTACGCGACTACAAACGAGCGGCATTAGT 82009 29 100.0 32 ............................. CCGACTCAGTCAGTCGCATTTATGATCGCAAC 81948 29 100.0 32 ............................. CCAATGCCCAACCCTAAGCGAGCAAAAGACAC 81887 29 100.0 32 ............................. TCCTGTTCAAAAACGGCGCTCGCCCTGGTGGC 81826 29 100.0 32 ............................. AAGAATTTTTTTTCTTGATTGGGTAGCTCTTC 81765 29 100.0 32 ............................. TCTGTTTGACGCATAACATCTTTGATGCGTAT 81704 29 100.0 32 ............................. CCTCATTATCCATCATGAGGCCACCCAGTACG 81643 29 100.0 32 ............................. GTTCGCCGTGAGCATGGAATCGTATATGCACT 81582 29 100.0 32 ............................. ACGAGTTCGACGGCTCCATGTCAACGACCGTC 81521 29 100.0 32 ............................. AAAAAAACACAATTACCACGGTCAACAATCAA 81460 29 100.0 32 ............................. TTGGGGATATACTCCCCTTCCAACTTCAGCAG 81399 29 100.0 32 ............................. CCGCCTCCTCACCAACCACTGGCTCGTTACTT 81338 29 100.0 32 ............................. TGATCGTCTGATTACTGAGACCGTAATCAGCC 81277 29 100.0 32 ............................. CTGTCCATCTGATTGCTTTGACGCTAAAAACG 81216 29 100.0 32 ............................. GCTCCCACGCTTCGAACGTCATCGGCAGGGAC 81155 29 100.0 32 ............................. GTCACGGTGTTAGCGCACGACGTGGCCTTTTT 81094 29 100.0 32 ............................. TTTAACTTCAACAGCATTTTACGAGGCGACAT 81033 29 100.0 32 ............................. TGCTTTTCATTTTGACAACAGTATTGAGTATG 80972 29 100.0 32 ............................. TCGATCAGCTCTTGTCGGTAGGTGTAGATCGC 80911 29 100.0 32 ............................. AACAACGCATAAAAAAAGGCGACTATAAAAGC 80850 29 100.0 32 ............................. CTAACGAAAAAGCGGCAACAGCTGCATTGAAG 80789 29 100.0 32 ............................. CAGTTGACGACGCAGGCACATTCTCCGGTTAT 80728 29 100.0 32 ............................. AACTCGTTCACTGGGATATACCGCTAACCTGG 80667 29 100.0 32 ............................. ATCCCGACCGGACACCGCAGTGCCAGGCATTC 80606 29 100.0 32 ............................. CTGGTACAACGAAGAAATCGCAATGGCCTTCG 80545 29 100.0 32 ............................. CCCAACGCATCTGAAATGGCTTGGCTTGATGC 80484 29 100.0 32 ............................. TTTTCAAGCTCTTGACTGTCGCCACCCAAGCT 80423 29 100.0 32 ............................. CCAATGGGTTTAATCGCGTACCCAACCGCAGC 80362 29 100.0 32 ............................. GCTGCTACCGTGCCATGCGCTGGCGTCGCTGT 80301 29 100.0 32 ............................. TTAAAACACTCATTGGCGCAGCCGGTGAAGTT 80240 29 100.0 32 ............................. ATCCTTTGCTAGCCGGACCAAGCGACGGAGAA 80179 29 100.0 32 ............................. ACCAAAGATAAATATTTATTTGTCTTTATAGA 80118 29 100.0 32 ............................. TAATCACCAGATGGATCAGAAAGGAAGGCATC 80057 29 100.0 32 ............................. GAGAACCAGCAAAGCCAAAGCGCACTGAATAT 79996 29 100.0 32 ............................. TGTCTGTTTTCCCTAAAAAATAATTGTAATTA 79935 29 100.0 32 ............................. TATCATCCGCAAGTTCATCTTGCTGTATCTTA 79874 29 100.0 32 ............................. GCACTGGATCAAATTGAGTTAGCAATGGAGAC 79813 29 100.0 32 ............................. GGAATAACCCAGACATTTTTGACTTTGATACC 79752 29 100.0 32 ............................. ACGTGAACATGAGTTTGATTCTGATGAAGCGC 79691 29 100.0 32 ............................. AATACCCGCAGAGCGCGCTCATGGTTCGAAAA 79630 29 100.0 32 ............................. CCAGCGAGTGGATCGCTGGTCACACCAGTCCC 79569 29 100.0 32 ............................. CCAGTAAACACTACAAAGCACTGGCTCCCAAA 79508 29 100.0 32 ............................. TCGTTATAGATGCGGGCACTGGCGTGGCGCAG 79447 29 96.6 32 ............................T CTCGCACGATCACGGATATTGACCCGTATTTA 79386 29 100.0 32 ............................. TATGTATTTATTTTCGGAGCATGAGGAATTTA 79325 29 100.0 32 ............................. TGAGATTTCAGAAAATCTATTATTAATGTTTT 79264 29 100.0 32 ............................. CTGTTAGGATTTATTAACTATCGCACCCATAA 79203 29 100.0 32 ............................. GGTGCTGATACGCTTGTAGAACTGCTAAATGA 79142 29 100.0 32 ............................. GAGAACTGTTTGACGCAAACATGAGTGCTGCG 79081 29 100.0 32 ............................. CCATTGCCATTGACCCAGGAGGATAACCCGCT 79020 29 100.0 32 ............................. GCAGCTTTGAATCCGTCTGGTAGCCATTGGTC 78959 29 100.0 32 ............................. TCGGTCTGGGTCACTTGTTTCATTCCCCTATA 78898 29 100.0 32 ............................. TAATGGTGGATTAGATAACCCGAACAATCGCA 78837 29 100.0 32 ............................. CACGTCATGCCTGCCAGATATCAGCAGGGCGA 78776 29 100.0 32 ............................. TGCTAAACGCGGAGAAGAAACCGACGCTACTA 78715 29 100.0 32 ............................. TCGTATCCCAACCGGGTACGCTGCCATTAGTC 78654 29 100.0 32 ............................. TCGTATCCCAACCGGGTACGCTGCCATTAGTC 78593 29 100.0 32 ............................. GTATCTCAGCTTTAAGCGCTACGAACGGTGGA 78532 29 100.0 32 ............................. GCAAACGAACCAACAGGTCAGCTTTAAAGACT 78471 29 100.0 32 ............................. GTATAAGGCGCGCATGCGTGCATTGGTGTTAG 78410 29 100.0 32 ............................. TTACCGCCAACAAGCGCGCGATTGCAGGTGCC 78349 29 100.0 32 ............................. CCCCTCAAAGAGATACTGGAAGAATCACCCGT 78288 29 100.0 32 ............................. CGACACGCTGTCAACACCGGAGTCATTATCAA 78227 29 100.0 32 ............................. GTAGGAGAGAGAGATTACATTATCAAGCATAT 78166 29 100.0 32 ............................. AATCCCTGAAGCAGTTGACGCCACACGTAAGT 78105 29 100.0 32 ............................. GCGCGCTATACACCACAATGCCGCGGCTGTCA 78044 29 100.0 32 ............................. CACCGTCGGGCTACCAATCAAGTGCGCTGCAG 77983 29 100.0 32 ............................. GGTGGTGGCACTCCGCCAGTACCAGCGCCAAC 77922 29 100.0 32 ............................. CTTTCGCCTGACCTATAAACCCATTCTAAGTG 77861 29 100.0 32 ............................. GTTACCGCCCAGCATGACTTTTGAAAAGCCGT 77800 29 100.0 32 ............................. ACTTTGAGCGCAGCAAGCAAGCACTCATCGAC 77739 29 100.0 32 ............................. GAATATCCAGCCCCAGAACGGTGCCAGCTGCA 77678 29 100.0 32 ............................. CTGTTGACGCATCAATTCGTGCATTTATCCAA 77617 29 100.0 32 ............................. CGCCTGAATCTCATCAACTTGCGCATCAGTAT 77556 29 100.0 32 ............................. CCTGATAGAAGAAGTCTCACCCGTTAAAGAGG 77495 29 100.0 32 ............................. CAGTAAAAGGCTGCGTTAAGTAATCAGGATAA 77434 29 100.0 32 ............................. TCAATGATTATTCCGGTGAACAACAACTCCGG 77373 29 100.0 32 ............................. GATATGCTGGATCAGATGATCGAACGCTATGT 77312 29 100.0 32 ............................. TTATGACAATCGGTAAAGCCATAAACGACTAT 77251 29 100.0 32 ............................. CTTTAATTAATAAATCCTAGCAGCTTGTAATT 77190 29 96.6 32 ......G...................... TTTTCTGAGGGCAGCCCGTTCCCTAAGGAGTG 77129 29 100.0 32 ............................. GATTGAATGGCGTGTTTATAACGCGTTCCTTC 77068 29 100.0 32 ............................. TCTAATTGACTTATAATATGACTTATTCTTAA 77007 29 100.0 32 ............................. CAGACACGATGGGTATCTCCGGGTTCATGTAT 76946 29 100.0 32 ............................. ACACCAGCCGGCGAAGAAGCGGTAGTGATTCA 76885 29 100.0 32 ............................. TCTTACCAGCAATTAGCAGTCTGAAAGCTTCT 76824 29 100.0 32 ............................. GCCGCGCCACTATTTCAGAGAGTCTGGCTAGT 76763 29 100.0 32 ............................. ATTCATCGCAGCTAGCTTGGCTTCAGGTGTAT 76702 29 100.0 32 ............................. CAAAGGATGTAATCGAAAAGCTTGGCTTGGAC 76641 29 100.0 32 ............................. TGGCTACACATCAGCGCAGGCTGATGCCAAAA 76580 29 100.0 32 ............................. AATGGTGGGCTGGCGTTGTTGACGTTGCGGCA 76519 29 100.0 32 ............................. ACTTCCGGAACGTCTTTAAACAGGCGGCGCTT 76458 29 100.0 32 ............................. CCACATTGCTTAATAAACGTGCGTTTCTTGAA 76397 29 100.0 32 ............................. CCAGTGCTACAGTTGGCCATGGCAACGGCAGA 76336 29 100.0 32 ............................. CTTGACGGATTCACTCGTAAAATCCTAGCAGC 76275 29 100.0 32 ............................. GCCATCGTGTGGTACGAACTTCGGTAGCTGTG 76214 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 130 29 99.9 32 GTGTTCCCCATAGGCATGGGGATGAACCG # Left flank : GAAGAGGTGCTAGCTGCGGGTGAAATTAAACCGCCTGAAATGCCGGAAGAGTCTGTTCCTCCGGCAATACCACCTGCTCAATCAATGGGGGACTCTGGACACCGGAGTAAATGATATGGCGATGTTGGTGGTTGTGACTGAGAACGTTCCTCCCCGTCTACGAGGACGTTTAGCTATTTGGTTGTTACAGATTCGTGCGGGTGTTTATGTCGGGGATGTATCTAGCCGAGTTCGTGAAATGATTTGGGAGCAATGCAGTGAACTGAGTAGTGACGGCAATGTTGTGATGGCTTGGAAAACCAATACTGAGTCGGGTTTTGATTTTCAAACGATTGGAGAAAATCGTCGAATCCCTGTTGATATGGATAATTTACGACTTGTTTCATTTCTTCCTGAAGGTGAAGAACGTGCTCTTTAATAAAGTGGAATATTTAAGCAATTTAGTCGGTAGAATTTCTGGGTTCTGTTTTTCTTATTTAAACCAATGATTTAGAATTGGT # Right flank : AAAAAAGATGCTGGTTCGAAATACTTTCGACCTTGGATACATACTCAATTATCGAGCTGTTGCCGTATGAAGAATAGCTAAGCTACTAGTTACAAAAATAATAGCTGACTTAATCACGCCCTGTCAGTAAACTGCCACACGCCAGTAGAAACTCATCTATTAGCGATGCACCACCGTATGAACCACATGTTTGTTTTCGAAGTAAACTGAGAAGTTACCATAGTTCCAGCGAGTAATTCGTGGGTGTTTGCGGCTGACTTTTCCTTTGGAAGTAGTGATTTTTTTAGCGCTTCCGTATTTCGCTTTGACTGATTTCATGGAGACGCCACGACGCGGTGTATCGGCTTTTGTGATGACTTTAGCCTGTCCGTCAATCTTTAGAATTTCGGCTTGTGCTATGTTCGATGCTGATAATAACGACAAAATGGTTAATGATGCAGTCAGCAATAAAGGATTAAGTTTCATGGTGTTCACCAGATTACTCATTATTTTAGTTGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCATAGGCATGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCATATGCATGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //