Array 1 86735-87168 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUGF01000050.1 Porphyromonas gingivalis strain 15_9 isolate 15_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 86735 36 100.0 30 .................................... TGTATTTACAAACTACAAGGGCGCTGAAGA 86801 36 100.0 31 .................................... TAGAGATCGAAAGATGGAAAGAAAAAGTATA 86868 36 100.0 30 .................................... ACTACACAATGTCTGACCTGAAAGCTACCT 86934 36 100.0 30 .................................... GCCCGAATTTTTATCGTAGAAGCGAAATAC 87000 36 100.0 31 .................................... GTCAATTAAGCGGGCGTACGACAGTGATGGG 87067 36 100.0 30 .................................... ACGTCCAAATGGGACAAGGTGAATGGGGTC 87133 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 100.0 30 GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC # Left flank : TCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGCGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGCGGGTGCCTCATCTATTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGTTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAAGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAAAAAAGGAAAGCACTCCCCGGTATAAATTCACCGAAGAGGGGAGCAGCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGCAAAAGAATCCCCACGCGCTACTCCCTCCCTCTACATTCCAACGCCCAAGCCACCAATCAGGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTAACGGTAAGGCTTTGAAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCGCTCAAAAGTTCAACGTTCGCTTTTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 54212-54775 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUGF01000004.1 Porphyromonas gingivalis strain 15_9 isolate 15_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 54212 36 100.0 30 .................................... TTGTCATAATATTTGTTGTTTGTATTGTTT 54278 36 100.0 32 .................................... ACTTTCTATCTTCATTAAAGAATGCTACACCT 54346 36 100.0 30 .................................... TCTTCGTTTTTGCCGCACGGGCGTTTCTTT 54412 36 100.0 30 .................................... ATGATTCGCTATTTTGTCCCCGTTGCGGGA 54478 36 100.0 29 .................................... CATGCTGTATTTTTATTATCATACTGAAA 54543 36 100.0 30 .................................... TCCCAACATTGCATCTTAGAGTTATCAAAC 54609 36 100.0 29 .................................... ACAGGCGAGAGGTTCGCCTTGACCCTCTT 54674 36 100.0 30 .................................... TTAGTAGCAATAACGAAGAAGTGTCTTAGC 54740 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 9 36 100.0 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCG # Right flank : CTATTATTCCGAAAGGAGAAAGAGGGGAAGTTGTGCTGTTGATGGGGAAGTATTTCTAAATTAGCGATCGCTAAAGTGATGGAAAATGGATAGGGGGATCGTGTTCGGAGGAGAGGGTTGTAGCCGACAGTGTTTGTGTGCAGCTATCCATTCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCCGTAAATACCGATTCTTTTAACTCATATAATTGTTTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGCCGGGAGCATATCGCCGGACTCTATGATCGCTATGGCTGCGAAGCCGATGTTTCCATCGTAGAGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 5475-5004 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUGF01000014.1 Porphyromonas gingivalis strain 15_9 isolate 15_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5474 37 100.0 37 ..................................... CTTTTTTGCTACCGCTGAGGTCTTGCTTCCTTCCTCT 5400 37 100.0 36 ..................................... AATTTACGACTTATTTTTCAGATAGGTATCTTCCAG 5327 37 100.0 34 ..................................... GACAGCGGGGTTTTTGCTGAACCAACTCCCTGCA 5256 37 100.0 34 ..................................... AGATTAAGAACATTTTATAAGTTCAATTAATTTT 5185 37 100.0 37 ..................................... AGAACATCTCGCGTTTTCAAATCTAACTTGCGGAGAA 5111 37 97.3 34 ....................T................ ACAAATGCTTGTTTTTCTGCTTTAGTAATACGTT 5040 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 99.6 36 CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTCTTCCTCTCTGTCAGCATTGTTACACCGCTGCTTGGATGAGCGGACATCCGACCCTCCCTAAGAGCCGGAGAAAAAGGAAAAGTATTGTGGTTTAGTTTTTCGAAAAAAATCGAACCTCACATCGCTCTTTGACGTATTGATTATCAGTCGGTTGCAAGAACAACTCTTTTCTCCTGTTTTTCGAAAATAGGAGAAAAGGAGAATTGGGACTTTTATTTTCGAAAAATAGAGGCTTTTCGCTATTTGTAAGTGTTTGATTATCAAACGGTGTCTTTCTCTATTTTTCGAAAATCCAAAAAACGAAGGCTCCCTCTTTCTTATTTTCGAAAACGGAAAATCAGGAAATCTCATTGTATATCAATGAGATATAATCAGCTCAACTGCAAAAATAGTGTTGTAGCTGCATTTCTCAACTTGTATTTTCGAAAAAAATAGAATCGTTCTCTGCCAATGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCGCTCAAGTGC # Right flank : ATTGATTACCGAGGGTTAGAACGAACGCATACACAGAGTGTTCTGGAAGCGATGGCCTACAATCTTAAGCGCATGCCCCCGGGCTTCTGTGCTCTATGGCGTGAAATAGACGAAAAATCTCCCCATTCGGAGGCTTAAACCTCCGAATGGGGAGTAAAGGGAGAGTCCGACCGATAGAAAAACAACAGCAAACAACTCAAAACTTCCTTCGTATTCACACATCTACGAGGATGCCAAACGCACAAGCGAGTTGTGTAGCGGTCTTATAAAAGTGGATAACGGACTCTTTGGAGAAGACTATCGATGCTCTGAAAAACGTGGCGCGGGAACTTTTTCGTTTTGGTTCGGGAAGTGAAAAATTATCGCGCCACAGCGAAAAAATTCTCGCGCCGCTTTTCCCGAAAACACGCGCCGCAATCCGAGCATTTCCGGTCTGTGAACTTCCAAGAGGCGGATTTGTCCGTAAAGGAAAGTTCGGTCGTTTTCGGGGGACAGGCTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 37690-35224 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUGF01000055.1 Porphyromonas gingivalis strain 15_9 isolate 15_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================================================================== ================== 37689 30 96.7 36 A............................. CTTCGATTGGCCCGTAAGGGAATTCGCAGCCAAAGC 37623 30 100.0 35 .............................. GATCCGATTCGTCTGCGTCGTCGAGCATAAAGGCG 37558 30 100.0 36 .............................. CTCAAGGGATTGAATATAGTTCGAAAAAAGTAGCAG 37492 30 100.0 36 .............................. ACATAGCAATAAGGACTGCAACAAAGTAGCAGATCA 37426 30 100.0 34 .............................. GTACCACCTGCAAGGGCGCGGGCGCTGCGGAAAA 37362 30 100.0 36 .............................. ATATCCTCAACGAAGGGTGCCGCAACGGATTCTTTT 37296 30 100.0 36 .............................. AGACGTTTCGGATATAGAAGTATCCGGCGAGAGTCT 37230 30 100.0 37 .............................. TGCCATACGATTCCTGAATTTAACAGTAAGGGAAGCA 37163 30 100.0 34 .............................. CACCTCCCCCGTGGTGGGGATGGCGTTGGCGAAT 37099 30 100.0 36 .............................. TCATTCGCTGATACTCGGCCAGCTCGTCCGCCGTCA 37033 30 100.0 34 .............................. GAGGGTATCAGCAACCTGTTCCCAGCATGGAACT 36969 30 100.0 34 .............................. TGTCGTTAAACAAGTCCTTTACTTCTTGCACTGT 36905 30 100.0 34 .............................. AGGGATTGACGGAGACGCGGAGGTCGATGTCTTG 36841 30 100.0 35 .............................. CATCCATATTTTCGACAAGCAAAGTTTCCCCGAAA 36776 30 100.0 101 .............................. ACCGTTTCAGGAACAAATACATTGACGGTTGTACTGTTTTAATCTGTCCGCCCTGTGCCACGAAGCTGCAATGATCGGCCAAATACATTGACGGTTGTACT 36645 30 100.0 36 .............................. CGCACAAACGGGGCAAAAGGGTACAACGCCATCTCG 36579 30 100.0 36 .............................. ATGCCGCGCCCAATAGATTGACAGGTCAGCAAACAG 36513 30 100.0 36 .............................. TGATCTGGTCACGCTGACCGTCATTCAGACGCCCCT 36447 30 100.0 35 .............................. GTCCGAGGGTGATATTATGTGCATTTACACTGCCC 36382 30 100.0 34 .............................. TCATCGGGTCGGGGATACTCGGCTTGCTCGGAAC 36318 30 100.0 35 .............................. CGTATTTGACAAAGAATTTCGCGAACGTGTTTTTA 36253 30 100.0 38 .............................. CCTGCGTATATCCTCCTCGCAATCCCTTGACAACGTAC 36185 30 100.0 36 .............................. AAAAAGCCCTGTACGGCCAGTTTCTTGTGTCCGCCT 36119 30 100.0 37 .............................. CTCTGACAAGATTTCCTCAAATGAGTACACAGGCGTG 36052 30 100.0 37 .............................. GATGAGCACCGCACCCTCGTATCCTCTATTCGCGAGA 35985 30 100.0 37 .............................. CATCGCGGCGAAGGAGGAGGCGGAGTACCGCACAAGT 35918 30 100.0 34 .............................. TATCTCCTTAAGTATTTATTAAATTAAATATAAA 35854 30 100.0 37 .............................. TCAATAGTGAGTTAGGGTGGAAAAATGGGGAAATAAA 35787 30 100.0 38 .............................. TCAAAACTCGGTCCAGAAAGTTGAATTGTCGTTTCTGA 35719 30 100.0 38 .............................. TCGTATCTGCCTTTTCCAGAGTCAGTGCGGAAGAGATT 35651 30 100.0 36 .............................. ATATCTGCTTATAATAGCCTAAATGAGCACTATTCA 35585 30 100.0 36 .............................. CCTCTTTGAGTGGACTCTCTAATACTAAGTCTTTAA 35519 30 100.0 34 .............................. TAAGTATTCACATAGAAGAAGTTGTTATAACAAA 35455 30 100.0 37 .............................. AATCCTTGGGTATTGGAAAACGTAGTACCCTTTTTAC 35388 30 100.0 38 .............................. ATTGATTATATAATTAGTTATAAACCTTCGCATATCAA 35320 30 100.0 37 .............................. CCTAGTGTCTTTGACCCTGAGGCAAGAGTGAGTATTT 35253 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================================================================================== ================== 37 30 99.9 38 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TGTTTTTAATACTCAAATATACAAAATAACTCCCTATTATACAATGAATTAACAAACAAAATACACACCAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATA # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCCGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //