Array 1 11072-11345 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXY01000010.1 Thioalkalivibrio sp. ALE14 F572DRAFT_scaffold00022.22_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 11072 24 75.0 42 .G...AAA...C.C.......... GTTGCGCCTCGCGATGACGGGCACGGCATGGGCGCGGTGGCC 11138 24 95.8 35 .G...................... CTTGCGCTGATGGGCAGGGCATGGGCGCGGTGCCC 11197 24 100.0 35 ........................ CTTGCGCTGATGGGCAGGGCATGGGCGCGGTGCCC 11256 24 100.0 42 ........................ TTTGCGCCTCGCAATGACGGGCAAGGCATGGGTCCCGTGCTA 11322 24 91.7 0 ...A..C................. | ========== ====== ====== ====== ======================== ========================================== ================== 5 24 92.5 39 GAGGCCGGGCGATTGCCGCGGCGC # Left flank : ATGGCGCAGTCGAGCAGGCGGGAGCCGATGCCGTGCCCGCGCCAGGATTCGCGCACGGCCATGCGGCCGATCTGGCCGGAGGGCAGCATGCGCAGGGTGCCGACCGGTTCCTCCCCTGGCCCGGTCGCCAGCCAGTGCAGGGCGGCCGCGTCCAGGCCGTCGAATTCGAGCGCCTCGGGCACTCCCTGTTCCTCGACGAAGACCTCGCAGCGGATGCGGGCCAGTGCGTCGGCGTCGGCAGGCCAGGTGGCCTCCCGAAAAGTGATGGGATGCTGCATGGGTATCCTCCTCCGGCCGCCGTTGGAAGGAGCCACGCCCACGCGGGCGGGCAAACCGGGTGGTGCTGGCTCCTGGCCCCGGACGGAAGAGTCTAGTCCAGGTTCGGGGAATCTTCCTGTGAAGGGTTTCGCGGAACGGGGGCTGTACCACGTCGGGTATGTCTGGCGGGAAGGCGCATGATTGCGGGTGCCGCGTGGCAATCAAAAAGACGGCCCGGTGGC # Right flank : CTTCGCGCTTCGCAATGACAGATCGTGGCTGCCCGGCGTCAGCGCTGGCCGATGAGGGTGTCGCGGAAGCGGCGCGACAGGGGGGCTTCCGGGTGCAGCCAGATGCCGAAGTAGGCCTCGGCGAAGTCGTGGCCGGGGACCTCGACCAGCGGCGTGCCATTTTGCAGGAGGCGGGTGCCGTGACCCGGACGATATTCCAGGGCGTAGCGGTCGCCGGCCTCCATGTCGCGGTAGGCGGCGTTGAAGGTGTTGAGGCGGTCGGCCAGCGCCGCCAGGGTCTCGGCGTCCTGCTGGTCTTCGAGCAGGCTGTTGCCGCTTTTGCGGAAGTCGTCGGCGCTGATCGCGCGCAGGTATTCGAGTTCCAGGCGCTTGGGTACGGCGGCCGTGAGTACGTCCTCCGGTGCGACGTCTTCGGGCGCGTAAAGTGCGCCGACGTAGACGCGGAAGATGGTGTAGCGGTAGAGCCGGCCCGCGCGCAGCGGGACGATCGTATCGTCGAT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGGCCGGGCGATTGCCGCGGCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 10698-10940 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXY01000012.1 Thioalkalivibrio sp. ALE14 F572DRAFT_scaffold00020.20_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 10698 36 100.0 34 .................................... GTGAGGACAAAGCCCTCGTCGAGCGCCCAGACAT 10768 36 100.0 33 .................................... GGAAGTGATCTGAACCACCGGTCGATCGTCCTC 10837 36 100.0 32 .................................... ACCCCTGCGATGGCGACAGCGACGACACCGAA 10905 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================== ================== 4 36 100.0 33 GTCCGGCCCATGCCCCGACTGAAAGGGGATTAAGAC # Left flank : AACAGGCTCGCACGATCGCCACTGCCACGTGCCTCGACCGGGGCATTGGGGGTCAGCCATGCCAGCAGCAGCCGGTCGCGTTCGGGGTCGATCAGCTCCCCCAGTTGCAGGTAGAGCTCGTGCGCCTCCCGAGGTGCAAGCAGGCACTCGTGCACAGATTTCTGGCCATCAATGCGCCATTGCAGCAGCTTCCGGTGGACCCGGCGGCGGCGCAGGGGATTGCTGATATCGTAGGCAATGATTGCCGGTCGTCGGCGCATGGCATGCTCCTTTCGCTGAAATGAACGGAGCGCCATCCTCGCAATGCCGGCTGGCCAAGTACGGACCCGCAAGCTTGTCCCGGATCAGGACCAGGATCACGCCTTGCGGCGCCATGCCGGTCGCGGTTAACGTCAGACATGGGAACCGGACACCGGCAGGCAAACTTTCAGCGCACCACAATGGTGCATAGATACGCGCGCCAGCACACTGATCCAGAAAAGGTTTTTTCAGACCGAAGG # Right flank : CGCCCCGAGGGCGCTTAGGCGCCAATCGAGCCATGTCCGACCCATGCACGGACTGAAACGGAGTCGGCCAGCCGTGACGACCGGACTCCAGAGTGCCCGGCCGCCTGGCCGAGGGGCCCCGCCCGCCCTGTCGCTGTGCTCAATGCCCGCCCCTGACCCTTCCTGCAGCCGCGGCATCCGGCAAGCTTGCGGGGACGGATGCCCCGATGTGTGTCCGGTTATGATCAGCGCCTTCATTCACACCCCGGAGTCCCGGCATGTCCCGTTTCTGGATTGCGACCCTAACCGCCCTTTCCCTGTCCGCCCTGACACCCGCCATGGCCGAGTCCCGGGCTGCGCCCTTCGATATGCCGCTGGACGGCAGCTGCGAGGCGATCGAGCAGCACCATGACACCCTCCGGAGCTCGAGCGGTGCGCTGGGCTTTGACACCTTCCATCATCTGGATGCGGGGGCCATTCGCTTCGAGGGGCTGCAGGGACTGCTGGCGGTCTGCGACGCG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGCCCATGCCCCGACTGAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 2 22936-23803 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXY01000012.1 Thioalkalivibrio sp. ALE14 F572DRAFT_scaffold00020.20_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 22936 36 100.0 33 .................................... TCTCGCTCAGGAACCAACCAATCCATATCGATT 23005 36 100.0 33 .................................... ATCCGCTGAATGAGCATTATACGCGAATTGTTC 23074 36 100.0 34 .................................... CTTTCCACAAGGGTAAGCATCACCATTGAAGTAT 23144 36 100.0 34 .................................... TGTAGTCGCGGACCTTGCTCAACACTTCAAGAAC 23214 36 100.0 34 .................................... GCCGCCACCACGTCCAGGCAGATCGCCGCGTAGG 23284 36 100.0 33 .................................... AGTGTGCGGCCTGAAACAGCGCCGCCGCAGTGT 23353 36 100.0 34 .................................... GCGCCGTTAAAAACGGGCTTACCGCTAACGGTAA 23423 36 100.0 33 .................................... CCAGGCCCACACCGGGCAGGTCTACGACGAAGC 23492 36 100.0 34 .................................... CTTACTAAATAGACTAAATGTACTAGAAGGAGAA 23562 36 100.0 32 .................................... ATGTCGGGGGTTCAAATCCCTCCACTCCGACC 23630 36 100.0 34 .................................... CTTCCGTGAGTTTCAGGGAGGCCGCCCCGTGCGT 23700 36 100.0 32 .................................... GAACCATTCATGTTAAACGCGGCTTTCTGTGA 23768 36 94.4 0 ..............................C....T | ========== ====== ====== ====== ==================================== ================================== ================== 13 36 99.6 33 GTTGAACGACAGCCCTGAACCAAAAGGGATTAAGAC # Left flank : ATTCCCTCCGGCTTCGACATCCCGCCAGGGCGTCACGGCAAGCGCCAGGCCGGACTTTTTTTGGCCTGGCAGCTTGTGCGCGAACTCGGACACGGCGAACCGGTCCATTTCATGAAGGCCGAAGAAACCTCCCTGCGCGGACACCTCGACGCGCGCAACGTCTCGATCCTGGCTCACGGCTACATGCCGGTTCGCGCCGAAGACTGGGTACCCATCCAAAAATGGTTTTCCGAGCGCTTCATCCCCATGCTCCAGGCCGAGGTCGACACCGTGGGCCGCCCTGTCCTGCCCCGCCAGCTTCCGACCTGTCTGGAGGACACCATCCAGGCACTGAAGAACGAGCCCGTTCCCAGGGAGAGCGCCTGATGCCCCCTGCCACTGCCCCCTATGACGCGCCGTACACTGACTGCCAGCCTCTGCACCCCGCTTCCGGCAACCCCGGGATCGTCTGCAACCCCCCTCGCAAATCCCTGATTGTCAAGCTACAATCAGACCCAGCA # Right flank : TGCGCACTTGAAGACCTTGCGGTCCGCCAACTTGGGGGATGAAAGCCCTGCGCCAAGGCATGAATGAATGGTTCGCCCCTGCAAACCGGGCGGATGATGGATGAATGGGACGCTCCACGCTGAAGCACGAATAATGGCACCCGCCCCTGAAGCGTCAGCAATTGAACGAGCTCACTAACGAGCGCCCCCTGCACCGAATCCTGACCGCCATCCCGGCCGTTGATGGACTGCGTCACCCGACAAGCTCGCGGCGACAAGCTTGTCAATCCGTACGACCCCGCAGCCACTCGTTAATCTGGACCGAAATCCGAAACGGGAGCACGGTCCATGAGCCGGAGAAAACTCTACCTGGCAGCCTACGATGTACGGCAACCCCGCCGCCTTCGCGCGGCTCTCAAACGCGTGCGCGCACATGCCACGGGGGGCCAGAAATCCGTACACGAGGTTTATCTGACCCCGGGTGAACATCGTGAGCTCCTCCACGATATGAGCCTTCTACT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACGACAGCCCTGAACCAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 26685-27412 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXY01000012.1 Thioalkalivibrio sp. ALE14 F572DRAFT_scaffold00020.20_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 26685 36 100.0 34 .................................... AGTGTGGCAGGGCATTTTACCGGGTTTCGAGAAT 26755 36 100.0 34 .................................... CTTGGTAACACCCTTGCGAGCATTCATGGTACGG 26825 36 100.0 33 .................................... TTATGGGCTTCATCGGCAATGCTTTCCGCGTCA 26894 36 100.0 34 .................................... GGGTAGTGCCCAGCACGGCAGCCGGAAAGGTATG 26964 36 97.2 36 ..........C......................... GAATCTCCTCGACTGCTATTGGTTAAGTTACTTTTC 27036 36 100.0 32 .................................... TACACGGGCCGCCGCGCTCGTTATGCCATTCG 27104 36 100.0 32 .................................... GGAATACTCGTACTGTTGGACTGCATTAGCCA 27172 36 100.0 33 .................................... TGAGCAGGATATGCGATGAGATCGACATTCTTA 27241 36 100.0 32 .................................... GCTTCGCCGTGATTGATGAACCCGCCATTCAT 27309 36 100.0 32 .................................... GTACACAGAGATCATGTGTGCCTCGTCCAGCG 27377 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 11 36 99.7 33 GTTGAAGCAGTGCCCTGAACCAAAAGGGATTAAGAC # Left flank : TGACATCAGTAACCCTCGGCGCCTCCGGCGCTTTCACCGCTTCCTGCGAGGGCATGCCCTTCCTATCCAGTACTCGGTCTTTCTGTACGTCGCGCCCCATGACCGCGCCCGGCATTTCGCTGCAACGCTCGAACAACGCATCGACACACGCGAGGACGACCTGCGTTTGTACCCACTGCCCAGCAAACCCCAGTACCACACGTTGGGTCGCGCCCACCCGCTGGCCGGCATCAACCTCTTCGGGTGCGGCATCACCCTCGGCCTCTCCGACCCCATTGATGACTAACCCACACACCCGATACGCGGATCGTCCTGCAGCGCGATTCGCCCGACGACGCCGACGACCGACCGCGGCCACAAGGCGGCCACGATGCGGGCTTTCGGACAAACATAGAACGGCAATGTCCGCTCGCAGCGCGCACCTCGCTTCGGAGACCGGCCTGGCTTTCGACAACCCCCCTCGCAAATGGCTGATTCTAGAGCTACACTGGACCGCAGCA # Right flank : CACCCCTCCGGCACCGGCCGGGATTGCTCAATGAGTTGAAGCAGTACCCAGAACCAAAAGCCCCCTAGAAAAGCTTTCGGCTTATGCGGCCAGGCCCAGGGGCCCCCGCATAAACCTGGCATGCATTCCACTCTGAATGGGCACTGACCGAGAGCCGCCACCTGCATCGGGTGCACACGTTTTCCGAATCACCATGGAGAGAAGGCAATGACGCGCCTCCATATCCAGTTGGTGTCACACCAGCTGGCGGCCAACCTCATCCCCGCGCTGATGGAGCGCCCTGATCACGCAGCTCTGATCGTCACGCCCGCAATGCTCGAACAGGCCCGACGGCTTCGCGAGTTGCAGGAACAAAACGGTATTTCCGTACAGGTTTTCGATAATGCGCCGGACGCGGACGTGTCTCGGGTACACGAATTTGCGCTGGATCTGGTCGAGCGACTGCCGAAGGTGGACGAGGTGGTGCTCAATGTGACCGGCGGCACCAAGCTCATGGCGCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGCAGTGCCCTGAACCAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //