Array 1 907092-906876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIV010000001.1 Saccharopolyspora gloriosae strain DSM 45582 Ga0436921_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================= ================== 907091 25 100.0 39 ......................... GTCGGGCAAACGGGCCGTTCACGCCAGTGACAGTCCCGG 907027 25 100.0 39 ......................... ATTAGGCAGACGGACCGTTCACCACAGCGCCAGCACCGA 906963 25 100.0 38 ......................... ACTGGGCAAACGGACCGTTCACCACCACGCGTGCAGCG 906900 25 76.0 0 ..CG...G...........G...AG | ========== ====== ====== ====== ========================= ======================================= ================== 4 25 94.0 39 GTGAACGTCCCGTTCGACCAATCCC # Left flank : GGCCCGGTGTGCTGCAGACCAAGTGGGTGCGACGGGTGGAGGTCCTGTGACGCGCGCGCTGCTCGCCGCCGCCGGGCTGGCGATGATCGGCTGGGGTGGCTGGTACCTCGCGGCGGAACTGCTCGCCGACGAAGCGATCCGGTGGTCGGTGCTCGGCTGGCTCGCGGCCGGGCCGGTGCTCACCGACCTGGTGCTGCTGCCGCTGGCCGGACTCGTCGGATGGACGGCGGCCCGGGTGCTGCCGCGCTCCTGGCGGGCGCCCGCGGCGGTCGGCATGGTGCTGAGCGCTGTGCTGGCGCTGCTGGCCGTGCCGTTCCTGTGGCGCACCTACGCGCCGAACCAGAACCCCGGCCTGCTGGACCGCGACTACTCGACGGGACTGCTCATCGCGCTGGCCGTCGTGTGGGGCGCCGTGCTGCTCACCGCGCTCACCACCGCCATCGCGGCCAGGGTGCGTCGGCGGTGACGACGCCCGACGCGAGCGCAGGATCGGCTTCGGA # Right flank : ATGGGACGAACGGGCCGTTCACTCCGATCAGCGCCGGCGGGCGGAGGAGTGGATCAGGTGAGGGTGGGGAGGCCGATCGCGGCGTCGACGGCGATCGCCACGAACAGCACCGCCAGGTACGAGTTCGACAGGTGGAACAACGTCATCGGATTCGTCGTCCGCCCTTGGCGCACCGACGCGTGCAGCCGCTGGGCCACGATCAGGAACGCCGCGCCGGACAGGACCGCGATCGCCACGTACACCCAGCTCGTCGCGGGCACCAGCAACAGCGTGCAGGCCACCGTCGCCCAGCTGTAGACCAGGATCCGCGCCGACACCTGCCGCGGCGTCGCCACCACCGGCAGCATCGGCACCCCGGCGCGCGCGTAGTCGTCGCGGTACTTCATCGCCAACGACCAGAAGTGCGGCGGCGTCCACAGGAACACCACCGCGAACATCACGATCGCGGGCCACTCGACCTTGCCGGCCACCGCGGCCCAGCCGATCACCACCGGCATGCA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACGTCCCGTTCGACCAATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 3528544-3528029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIV010000001.1 Saccharopolyspora gloriosae strain DSM 45582 Ga0436921_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3528543 29 100.0 32 ............................. TGGTCACCAACGGGAGGTCGCGAGCAGCCCGA 3528482 29 100.0 32 ............................. CGGTGGCGATCAGCCACGGCTCGCCCAACCGC 3528421 29 100.0 32 ............................. GTCACGAACCGCGTGCTCGCCGACCGGCTACG 3528360 29 100.0 32 ............................. CGGAGAGCAGCCGCCCCGAACCGGGCGTGTTC 3528299 29 100.0 32 ............................. TCGACGACGCGGACGTCGACGAGTGAGCCGCC 3528238 29 96.6 31 ...........G................. ACCGTGTCCTACCGGGTCCAGGAGACCGGCG 3528178 29 96.6 32 ...........G................. TCGCGCAGCGCGGTGCGCACGGCGGGCAGTTC 3528117 29 96.6 31 ...........G................. CGCAGCAAGATCCGCCCGGAGTGCGTACGGC 3528057 29 93.1 0 .............T..........G.... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGCTCTCCACACACGTGGAGGTGTTCCG # Left flank : CAGCGCCCGGAGGTTGCTGTCGGGAATTTGGGAGAGCGGTCTCAAGGGGGATGAGCTGTGGGCGAGGATGACTGCACGATCTCGCTGGAGACGTTGCGCCAGGTGTTCAACGAAGCCATAAACAACCTCGAGGAGCGCGTCGGAGACGTCGTCGAACTCGACGAGGACTTCTTCTGGTCCGTTCCCCGTGAAGCCCGCTACGACCCCTACAGTGCCCCAGCTTCTGAACAGCTCACCCTTGGTCAGCTGACGTCGTCGTGGAACGCGCTCAAGCGGATGCACGCCACCGGCGAGCACATGAACGAGCACACCTTGGTGTGGGTCGCCGAGATCCTCCAAATCCTCGGCCAGCCACCACGGTGACCAGGTGGTCGAGCGGCTCGCGACGAAGTCGGCACTGGCCGCCGAGTTGTCGGCGAGCCACGGGCGGACGCTACCGTCGCGACATGAGACCCTTCGAAAACGTGCAACACGGTCCCTAAAACCCCAGTTCGCGAAGG # Right flank : GTGATGCGGTCGGCGTTCGAAACCGTGCTGGTGCGCTTTCCACGGATGTGAAGTGGGCCCGTTGCGGACTTGGCCGTCGGCGGTGTCGAGCAGTGCTGAGTGCGTGCGGAGGTGAATTGATCGTTCGGCTTCCGTTCCGGCGATCTTGCCGTGGTAAAGCCTGGGCAATGGCATCTTCGGCAACGTCCGAGCTCGATCTCGGCTGATCACGCGATTCCTCCTTGGTTGACCGCGCGGCTAAATTTGCCTCATGTTTTCCGCTATAGAGGAAGATCGAGATTTCTGCTGGTGGGTGGGCCGGCCAGCTGCATCGCCGCAAGCGTCCCGTTCGGGGCGTGGGCGATGCGGTGTGGTGGCGGCGTGATGGTCTTCGGCCCCGAGGAGGAGACTGCGGGAGACGTAGGTCGCAGGCCGTGCCGAGCAGGGCCGCGCAGCGACAGGCGGTCGGGCCGGAACGCCGCGGGTTCCCGAGGCTTTCGGTCGAGCTGCCCCCGCAGCAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACACACGTGGAGGTGTTCCG # Alternate repeat : GTGCTCTCCACGCACGTGGAGGTGTTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3541206-3540871 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIV010000001.1 Saccharopolyspora gloriosae strain DSM 45582 Ga0436921_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3541205 29 100.0 32 ............................. TCCGGCATTATCGGCCTGCTCGGCTCGGCCTG 3541144 29 100.0 32 ............................. CTCTACGACTCGTTCATCGAAGGCGGGTGGGA 3541083 29 100.0 32 ............................. GTGACGGTGGCGGCGCTGTAGATGGTGGTGCC 3541022 29 100.0 33 ............................. TCTGCCCGCAAGGGCTCAACCGGGGGGGGGTGC 3540960 29 100.0 32 ............................. GAGACCCGCGGCGGGCGGCTGATCGACCGGAT 3540899 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GTGCTCTCCACACGCGTGGAGGTGTTCCG # Left flank : GCTGTAGTTCGCCCACCCGAGCACCGACGTTGAAGGATCGCAGCAGAGATGACCTCGACCGACGCAGATGCCGCCCGCCGCACGCGGGGAGTCTGGTTCAAGAGCTCGTACAGCAACCCGAACGGCAACCAGTGCGTCGAGGTGTGCTTCGGTGCCGATCTCGTACACGTCCGCGACAGCAAGGAACACGGGGAAGGTCCGGTGCTCGGTGTGTCGGCTGCACGGTGGGCCGCCTTCATCGACTTAGTCGGCCGTTCCTCGCAACGCTGACGGTTCGACACGACGAGGATCGTGGAGGCCGCCGCCATGACCAGCACCGGGTTACGACAGCTGCCGTGGCGCTTTTCGAGCTACACCGGCGAAGTCGGTTCGCTTCGTTCGGCGACCTACCCGATGACCGGCTGTTGGCCACGGAGGCGCCGAGGAAGGTCAGAACCGGTCTCAACATGACTCCCTCCCAAAACGTGCAACACCCCTTCTAAAACCGCAGTTCGCAAAGG # Right flank : ACATTGCGGTCATCTTCCAGTAGGCAGGTCGGAATCTCCATCGGTGATCGGAAAGAGTGCGGCCGTCAGTTGCGGTTCAGGCCGTGCTTGCGTGTGTCGAGGGCGTCCTTGAAGTGGCTCTCGGCGATGTCGATTTGCCGCGTGGGAGTTGTTGGGTCGAATACCCGTAGCAGCGAGAATCGGAAGGTCGCCGGATTGAGCTTGCGTAGCTCGATGTTGCCGCCGTGACCGTTGGCAGCGTAGGACCGCCAACGCTGGAGGATGCTTTCCGCGCCGTCGGCCTTGCCGACGTACTGCCGTCCGTCGTGGGTGTCGGTGATCAGGTAGACGCCTGTCACCGACGCCAGCGCGGTATGCCAGGAGGAGTAGCGATGCTCGCGCATCACGGCCTGGAGTTCCACGTAGCCCAGAGCAAGCCGGTCGAAGCCGGGGAACGGCACCGGCTCTGCGTCGGCGATCTCGAATACCGGGTAGCCGGCGGCCGTCGTAGCGTTGATCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACACGCGTGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3573375-3574440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIV010000001.1 Saccharopolyspora gloriosae strain DSM 45582 Ga0436921_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3573375 29 100.0 32 ............................. CAGCTGTTCGACGCGGTGACGTCGCCGTCGTG 3573436 29 100.0 32 ............................. TCGTCCATGCCGGGCGAGGCGGCGGCCATCCG 3573497 29 100.0 32 ............................. GCTCAGGAGTCTTCGCTAGTCCTCCGTCTCGG 3573558 29 100.0 32 ............................. GTGATGGGGCAGGTGGCGCAGCAGGTCAAGCC 3573619 29 100.0 32 ............................. TGAACGCTGCGTCTGCCGTCCAGGAACGCGAA 3573680 29 100.0 32 ............................. GTCTACGGGATCGCGACCCGCGCGTCCTCGAT 3573741 29 100.0 33 ............................. GAGGGGCTGTACGTGCCGGAGACCGCGACCCGC 3573803 29 100.0 32 ............................. CCCTCAGTGCCTCGTCAGGAAGTCGTTCGATA 3573864 29 100.0 32 ............................. TGCGCGAGGACGAGGGTGAGCACGCGGCCGTC 3573925 29 100.0 32 ............................. TGGCCTGCCGCTCGCGGCCGACGTGCTGTTGT 3573986 29 100.0 32 ............................. GGCGGCCCGTGGTAGCTCCCGATCCGCAGCCG 3574047 29 100.0 32 ............................. GCCCTGGCCCAGAAGGGCCGCGGTCCGTCGCC 3574108 29 100.0 32 ............................. GAGGCGATTCACAAGTTCGAATTGAAGAGGAA 3574169 29 100.0 30 ............................. TTATCCCGAACTGTCCTCAACATCTCAAGC 3574228 29 75.9 33 TC.TG...T..A.C............... CCTTCGCCGCTCATGCTCGCGCAGACGTGGAAC 3574290 29 100.0 32 ............................. CACCTGCTGGCGGCGAACGGCCTCGTGCGTGC 3574351 29 100.0 32 ............................. ACCGTCGCCCGGCCGGAGTTTGACCGGCTCCT 3574412 28 93.1 0 .........................-.T. | A [3574436] ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : GCCGAATCCGCCGGAAAATCCGGAGGCATCGGCAGCTGCAACGCGAACGAGGGGACGATCTTCCCGATGTCGTGGAGCGCCGCCCAGAACTCCAGTACGGAGCACGTCTCCGACTCGCTCAAGCCAAGGCCCGCAGCCAACCGTCGTCGAAGACCCGACGAGACGAAGTCGCGCCACAACGCGCGCACCGCCGCAGCGGCGTCCAGACCATGGCAGGCAACGGGATACCGAGCTCCCCCAAGTCCACGTTCCTTGCCCCACAGCCGCAGATCAACCAAGGGGTCGGCCACCGCACCTCCCAAAACGAGAACACTCAATCACGGAGCGGCACGTTAACGGCTACCTCCGACAATCCGGACCGCCTAACGCCAAAGCTGGTCTCAACGGGTGAATCGCAGCTCGGATGGCCAAAGCCATCTACCGCACCCGTGCGCTACCGTCACCGCATGGTTCCGTTCGAAAACGTGCAGCAGCGTTCCTAAAACCCCAGTTCGCGAAGG # Right flank : GATCACCGCGGGCGTGTAGTCGGCTCGCGTGGAAGCGTTCCGCGAGGCGTGGCGAACTGGTCGCGCGCTTGAAATGTTCTTCGTCTGCACGGGTTACCGCATACCGAAGGCCCTGCACCGGTCGTCCAGGCCGGGTTTTCTACGCCGTCCGCTGGCGTGGTTCTTCACCGAGGAGTGCGCGCAGTGCATCGGCGTTGGCCGGCGAGGCGTGTCCGGGTACGAGTCCGGCGGCCCTCCAGCGGGCGAGGATTCGGGCTCGTTCTCCGGGGGTGGTGGCGCCGCGGATGCCGTGTTGTTCGGGATGGGGGCGCAGGAGCTCGTCGACGAGGCAGTCGGTGAGCACCGGGCAGGTTCGGCAGATCGCTTTGGCGTTTTCGCGGCGGCGGTGGGCGTCGCTGCCGGATTCGCGGACGTCGTCCTCGCCGAACCACAGCCGGGGGTCCGTTCCAGCGCAGGCTGCTTCGCGTTCCCAGGATCGGGCGTCGTGGATCTTCACGGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3998786-3997705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIV010000001.1 Saccharopolyspora gloriosae strain DSM 45582 Ga0436921_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 3998785 29 96.6 32 ............................C CGTGGCGCGTAGAGCGCGACGGCCTCTCCTGC 3998724 29 96.6 32 ............................C ACATCATGCATATCCTGCTCATGGGACACATA 3998663 29 96.6 32 ............................C AGCGCACCGGCGGCCGCGGCCGGGTGTGGGTC 3998602 29 100.0 32 ............................. CGGGTGCAGTACCGCGCCGAGCGCTACCGGGC 3998541 29 100.0 32 ............................. CAAACCGATCGCGTACTGGCTCTCACCTCGCG 3998480 29 100.0 32 ............................. GCGGCGAACTCGGTGTGAGCAAAAGGAAAGCG 3998419 29 96.6 32 ............................C TTCGCCACGGCGACGTTCGAGCGAGGAATGAT 3998358 29 100.0 32 ............................. ATCATGAGGACGAGGTCTTTCGGGGGGTATGC 3998297 29 96.6 32 ............................T ATGACTTGTGGTTCCTGTGGGCGTGCCACGCG 3998236 29 100.0 32 ............................. CCGGACACGAAGGGGCCCCCGCCAGGTACTGG 3998175 29 100.0 32 ............................. GCAAGAAACCCAAGTCGATGACCATGGACCAG 3998114 29 100.0 32 ............................. CTCGACCGGTCGGCGGATGGAACGGGGGCACT 3998053 29 100.0 32 ............................. GACGGCGAGGTCGTCGTCCATGTCGAGATCAA 3997992 29 96.6 33 ............................A ACGGGGTGGACGCTCGGACCGCTCGGCCCGGAC 3997930 29 96.6 32 ............................A CCGGGACTGCTGACCCAGCTCATGCGTACCGC 3997869 29 96.6 50 ............................C GCCGAGACCGCCGAGACCGCCGAGACCGCCGAGACCAGCGCGAAGAACCC 3997790 29 93.1 27 ......................C.....A GTGCTTGGGAGGCCACCGAGTTCGACC A [3997765] 3997733 29 69.0 0 ..GC..A......GT....T....G.C.C | ========== ====== ====== ====== ============================= ================================================== ================== 18 29 96.4 33 GTCGGCCCCGCGCACGCGGGGATGCTTCG # Left flank : CGAACACGCAGGAACCGTGGCGGGCGGGGTGAACTGGGGAGTGTTCGACGAAGACTACGACACCGAATTCACCGAACCCCACCTCGACGACCAGCACATCGCCGTCATCGGCCCCGAGCTCGACACACCGACCGGCAAAGGCCGACCATGACGGTCGTCATCCTGATCGCCGCACCCGAAGGGCTCCGCGGACACCTCACGCGATGGATGGTCGAAGTCCACGCCGGCGTTTTCGTCGGCAACCCCAGCCGCCGCATCCGCGACCGCCTCTGGGAACTCCTCGCCGACCGCATCCGCGGCGGCCAAGCCATCCTCGTCGAACAAGCCCCCAACGAACAAGGCTGGGCCGTCCGCAGCGCCGGAACCGACCGATGGCGACCCGTCGACTTCGACGGCCTCATCCTCTCCGCCCGCAACCGCCACACCCCAACATGATCCATTCCAGAAACGCACTAAACGAAAACCGCGTCATCCGCCAGTAAATCCGCAGGTCAACAAGT # Right flank : AGCATTTGGGGTAGAGGCGGTCGTACAGGGCAGGGGCGGGAGTCTTATTGCGATTCCTGCCCCTGCCCCTGTGCCCCGGCTGGGTTAGCTGACTACTCGGAGGCTGGGTGGGGTGTGAGCACGCCAGGCGCTGGGGAGGTAGTTGATCGGGGTGGTGGTGATGGTGGTGGTCCAGCGTTGTTGGAGGGCGTCGATGAGTCGGCGTTCGAGGACGGGGCCGGAGTGTGAGTAGGCCTCGCGGATGTCGTCGTCGAGGACGTGGCCGAGGCGACGGGATTGGGCGATTTCGGGGATGTTGTCTTCGATGAGCCAGGTTTTGTGGCTGTGGCGGAAGCCGTGGAAGGTCAGGCCGGTTTTGACCGGGTTGATGGGGATTGTCGGGTCGGTGAGGTGCTGGTTGCCGTCGGCGGCGGGTCGCATGGCACGGCGGGAGAAGTTGGATCTGCGGGGGTGTTCGTTCTCGGCGGTGACGAACACGAACGGTGAGTGGTGGCTTGCGA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGCTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //