Array 1 922176-919866 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065946.1 Pectobacterium parmentieri strain WC19161 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 922175 28 96.4 32 .............C.............. GATCTAGATATGCGCAGCATCACATTAATGGC 922115 28 96.4 32 .............C.............. CGTTTGCGGAGAAAACACAGCTTACCCGCCTG 922055 28 96.4 32 .............C.............. AGTTTGGCGAACTGCCTGATAACGTCACGCTG 921995 28 96.4 32 .............C.............. TGCGTTGATTGCTAATCCGCGTTCGTTCAGTT 921935 28 96.4 32 .............C.............. GATTAATTACCAGCCTGTGCACTCAGGCGTTT 921875 28 100.0 32 ............................ AGTTCTATATCGCATGATGCAATATCACTGAA 921815 28 100.0 32 ............................ CCAGCAATCTCGATCAGGCGCAGTGTGACCTG 921755 28 100.0 32 ............................ GCAACGTTACGAGCTACTGCCGCCTGAGTTGC 921695 28 100.0 32 ............................ GTTGATCAATCGCGTTACTGCAGCAACGTCAT 921635 28 100.0 32 ............................ ATCATCAGCGACCCACGGCGACAAGCGGCCTT 921575 28 100.0 32 ............................ AGCAAGCGTATGTGTGCCTCGACTCATAGGCC 921515 28 100.0 33 ............................ AGATGGGGAGCACTCTAGAGCCTTACCAATCAT 921454 28 100.0 32 ............................ AGACGGTAATTATATCGTTGGCGGTAATCCTG 921394 28 100.0 32 ............................ AGCATTCAGAAACTGCAATCGGCCGTTTGTGA 921334 28 100.0 32 ............................ AGTGACAGACATTGCCAGTGCACAAGCCGCTA 921274 28 100.0 32 ............................ ATGGAGCGACGTGAACCGAAATCTGTTCACAC 921214 28 100.0 32 ............................ TCACGCATAAACACAGCAGGGGATGCGTCCAT 921154 28 100.0 32 ............................ AGGTTAGGCGAAGAGATACTTGACGAGGAAGG 921094 28 100.0 32 ............................ GATAGGCGGCAACTCTGGCTCGTCGGCGTAGC 921034 28 100.0 32 ............................ GTGCAACTGCTGGCGTGATGAAAGCCGGTGCC 920974 28 100.0 32 ............................ TCAATCGGTAATGTGCTTGGCAACAATCCGGC 920914 28 100.0 32 ............................ TGGGTACCAAAAAGATTTCCAGATGACTGCAG 920854 28 100.0 32 ............................ GGATACTCGCCCCGACTTCCCGCAAACAACGG 920794 28 100.0 32 ............................ CGCAGCCGTGAGCATGGTTTCCAGCAGAAAAT 920734 28 100.0 32 ............................ TGGGTACTGAAACAGTCCAGGAACGACACGCG 920674 28 96.4 32 .............C.............. GTGACGCTCTCGAAGCGCATCAGCCTGCGCAT 920614 28 96.4 32 .............C.............. CCGCAGCAATCGCAGCAGTAGCTGCCATCAAG 920554 28 96.4 33 .............C.............. TCCTCCGCCAGTATTTACAGGTAAATGTCGTAA 920493 28 96.4 32 .............C.............. TCGGCGATAGAATGGGGTACGTTTCATGATTT 920433 28 96.4 32 .............C.............. TTTCACAACAAAAAATCCAATCTTTGGCTTCC 920373 28 96.4 32 .............C.............. ATGCTGAAGAGGCGGGCAGAGAAATCAATCTG 920313 28 96.4 32 .............C.............. GCAGCACTCACGCGGATAATCCTGCTCTGCGT 920253 28 96.4 32 .............C.............. AGTGGGGGCATGTCGGGAACACGGTAGAAATC 920193 28 96.4 32 .............C.............. TACGCAAAGGCCGAGCAGTGGAGGCCAAGACG 920133 28 100.0 32 ............................ AAGCAAAGGAATCATTGCGTAAATAAAAACCA 920073 28 96.4 32 .............C.............. TCCCGATTATGAGTCGATTGCTCTAACCAACT 920013 28 100.0 32 ............................ ATGTGGCGCAGTGGTGCGGGACGCTTGCGATC 919953 28 92.9 32 ...A.........C.............. AGATCACAGTGAACAGGAAAACGATATTCAGC 919893 28 75.0 0 ............GC......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 39 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAACTATTTAATAAATAAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATAGCTTGGGAAAATGATGGCTGCAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : TTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAGCTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAACCCGACTTTTATCTGGCGCAGTGCAACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAACCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATGTGGCCTCTCGCTATCAGACTTCACGTGCCAGAATAG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4362117-4361722 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065946.1 Pectobacterium parmentieri strain WC19161 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4362116 29 100.0 32 ............................. CCTACGCAGTTTATTGAGTTTGCAGATGGCGC 4362055 29 100.0 32 ............................. GATTTAGGCCGCTACTGTGGTGTTTCTGATGT 4361994 29 100.0 32 ............................. AATTTACGGTGAAACTTTGGGTTTCTGACCTG 4361933 29 100.0 32 ............................. CGTTACTACGCAGTGATGGGAATATTTCTGGC 4361872 29 100.0 32 ............................. TGATGTGGGGAATGTCTCTCGTCTGGAAACCG 4361811 29 100.0 32 ............................. GAGAAAGAGCGCGAGCTAAAAGAGTTGCGCAC 4361750 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTTTCCCGCATTCTAAATGGTGAGCGTACACTAACGCTTGATCACATGAGAGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTATTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAACCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGATCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTTTTATAAAACAAACCTCTACTTTTAGA # Right flank : TACCACGCGGGATTCATCTTTAATCCGACTGAGTGTTCCCCGCGCGGGGTCAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4365480-4363986 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065946.1 Pectobacterium parmentieri strain WC19161 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4365479 29 100.0 32 ............................. CCAACCGCAGCGGCCAGCCTTTCTTGAGAATA 4365418 29 100.0 32 ............................. CCGGGGTTTGCAAGAATCTTCTGATAACCTTC 4365357 29 100.0 32 ............................. CCTTAGTCAGAGCGGCACCTTCAGTCTCTGTG 4365296 29 100.0 32 ............................. TAGCTCCATCAATGAACCCAACCTTTACCTGC 4365235 29 100.0 32 ............................. GCGAGCGTGCGCACCTATGACGCCGACGGGAT 4365174 29 100.0 32 ............................. GACGCTAAATTCATTCGCAATGGCGTAGTGTT 4365113 29 100.0 32 ............................. GTCACCATCAAAGCCGATGAGTTCCTGAACGG 4365052 29 100.0 32 ............................. GCCTCTCATGGGGGTACTCAATGCTTCTTGGC 4364991 29 100.0 32 ............................. TATGCGGAGATAACTGCACCAATGACAAAAAC 4364930 29 100.0 32 ............................. AATAAAAAACCTATCATATATATAGGCTTATG 4364869 29 100.0 32 ............................. AACGCCTACGATCTTACTCTGTACGTCAGAAG 4364808 29 100.0 32 ............................. ATGGAAAATAAACTTTTCACACCCACCGGGGC 4364747 29 100.0 32 ............................. CCGAAGATTGTTCCTGCGGCCACGGTAGGTTC 4364686 29 100.0 32 ............................. TCGGGCCAGAGCATATCTCTCGCCATCGATGC 4364625 29 100.0 32 ............................. TTTCTCAACCGCCTTAGCCCCTATCTCACGCA 4364564 29 100.0 32 ............................. CCACTTATCAAGAATGTTTTTATTTATATTGT 4364503 29 100.0 32 ............................. CCGATGATTCTCAATGCGACGAACAGCAAGAC 4364442 29 100.0 32 ............................. GTTCATCTCAAAGAAAGGTAAACGCAATGAAT 4364381 29 100.0 32 ............................. ACATAAACGCACAATTAGTTGGTATGACTGCG 4364320 29 100.0 32 ............................. GGTTGAAAACTGAGTCTGAAACATCAACCCAC 4364259 29 100.0 32 ............................. TACCGGCGAACTGCTGGTAACCGTCCGCACGG 4364198 29 96.6 32 .....................G....... CAGATAAAATGTAATGGGCGCTCTGACGTCTT 4364137 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGG 4364075 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 4364014 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCAGTGTGGTTGCTGGAGGTTCGCGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : TAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATACTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGTGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //