Array 1 39079-37854 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOO01000003.1 Companilactobacillus hulinensis strain 8-1(1) contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 39078 36 100.0 30 .................................... AATAACAGATTGCGCCTGTACGTGTCGGTC 39012 36 100.0 30 .................................... ATCTAAGTGATTACGACAAAAACCGTTCTA 38946 36 100.0 30 .................................... TTCTGATGTAGAAGTGATTATCAACTCCGG 38880 36 100.0 30 .................................... TCAAATTTACTACACACAGTCAAATAATCA 38814 36 100.0 30 .................................... AGGAAGATGTAATTAATAAGCATTCTCCGG 38748 36 100.0 30 .................................... TTTTGTTTTTGGTTTTGCACTTTTGGTTTG 38682 36 100.0 31 .................................... AGTAATTACCAACAAATTGACTAAACTTGTC 38615 36 100.0 30 .................................... TGTATTACGTTCGATAAGGACGAAGAATGT 38549 36 100.0 30 .................................... CAATTAACCTTAAAGGAAAAACAAATTGTC 38483 36 100.0 30 .................................... TTGAATGCTGTTCGTTGGTTATTGAATTAC 38417 35 94.4 30 .........-......T................... CGCAGATACAGCCTTTGTGCCTTCTGGCCA 38352 36 100.0 30 .................................... AAGAGAAGTGGAGAGCCAAAGACAGACTTC 38286 36 97.2 30 ............................G....... AACAACGTCAGCAAAATGCCCCCACTTCAA 38220 36 100.0 30 .................................... TATTAAATTGAGTAAGACAACAAACAAATT 38154 36 97.2 30 ................T................... TAAGATTTTTAATATCGTCGCTGAACAGCA 38088 36 97.2 30 ................T................... ACGTTCCTTGAAAAAGAACAGTGACATATC 38022 36 97.2 31 ................T................... TAAAAAATGAAATCGAAATCTTACTTCTAAA 37955 36 91.7 30 .........A....C.T................... AAGTCATGTATCCTCCGGACCAGTAATACG 37889 36 83.3 0 A........A......T..........C...T...T | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 97.8 30 GTTTTAGAAGTAAGTCATTTCATATAGTTTAGAACC # Left flank : TGACATAAATTCAACGGCAAATATCAAATCAGTTTTTAAAACAATCGTTAATGATTCATATACAATCAATAGAGAAAAGATTGAGTCTATTAACGAACAAATAAACGGTTTATTCTTCGACATGATTAGCATTTATGATGAATCCTTTGATTTTGATTTAACAGAAGAATTAATAAAACTATTAAAATATAAAAGTATACGGGTTGATACTAGTATCTGGAATAATTACTATGATAAAATTCATTCAGTAATAACTTTTTATTCAGATTTCAGTGAAAAAAAGACATTACTCTTTCATGGTTTAGAACACTTCATAAATATAGAACAATTAAACGAATTAAATAACTATTTGAAATCGATTGGCTTGAACGTAATTAGTCTTGAATCATACCCAATGACCAAGAAGGAGAGTACTCTTGAAATTAAAATTTACTCCATCGATGATGATCATATCAGATTTGACTATTAGCCAAATACTTAAAGTTAACGTTAAGTAACTG # Right flank : TACGGGAAAATTCCTGCCTATTTATTTACTTTATAGACAACACATTTCATATAGCTCTATTTAAAAAACCAACTGTCTAAAAAGGCAGTTGGTTTTTTGATGAAATAATGCATAGTACAGTACAATCCCACAAAAAAAGCCCACCACAACCAAGTGACAGGCCAACAAACTAACTATTCATCAATACTTTCAACCTCAGAGTAATCAAAATCTTTAGTGTCATTATCAAACTCAAAAATCATCTCTGCAACTTCCTTAGGCTTCTCGATCATTCCAGCATGACCTGCACCCTTCAGGTCTTTCATAACCAGATGTGGCACACGACCGATTGTGGCCTTGGCATCTTTGACACCAGTTTCTGTCAAAATTTGATCATCATCAGAGAAGATGGCTAGGGTTGGCAGTTTAACGATACGAAGTCGTTTATTCAATGCCTTTTGTTCTAGATATTCTTCAGCAATCTTACCTAGTTTCTTATCTGTCTTCTTATCAACTTCATT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTAAGTCATTTCATATAGTTTAGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 3016-641 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOO01000004.1 Companilactobacillus hulinensis strain 8-1(1) contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================================================================================== ================== 3015 36 100.0 30 .................................... TAATTCCGTGATATTCATAAGTTGCAAACC 2949 36 100.0 30 .................................... AGAATACTGGAACACATTTAAACAGAATGG 2883 36 100.0 30 .................................... TCGACAGCAAAATTTCTACCGGTGTTGGAC 2817 36 100.0 30 .................................... AGAGATGAGCAGATAAGAGCTAGAGAAGAC 2751 36 100.0 30 .................................... GTGGATGAAGAAGACAAGAAAGTTCTAACG 2685 36 100.0 30 .................................... TATGAAAGGTGATTATCCGATATTGTTACC 2619 36 100.0 30 .................................... TAAATAATTTAACTACTGGTGCACCTAACT 2553 36 100.0 30 .................................... CACCATCTCCATCAACAATTGATTGCTCCA 2487 36 100.0 30 .................................... AAGCTGCTGGTCAGCCTGAAATAGATTCAA 2421 36 100.0 30 .................................... GGCAAAAAGCCATTCTGCAAATCCAGCATT 2355 36 100.0 30 .................................... TTGTCTATGTATCTTAATTTGTAGTGATAA 2289 36 100.0 30 .................................... CGTCATCTATCTGGGCTATGGAGGGTGGGC 2223 36 100.0 31 .................................... TGTAACATTATTGGAAAAGCTAACATCTTGT 2156 36 100.0 30 .................................... TTATTGAGAGGGATGTAATTATGCAAGGAG 2090 36 100.0 30 .................................... TTATTGAGAGGGATGTAATTATGCAAGGAG 2024 36 100.0 30 .................................... TTATTGAGAGGGATGTAATTATGCAAGGAG 1958 36 100.0 30 .................................... TTATTGAGAGGGATGTAATTATGCAAGGAG 1892 36 100.0 31 .................................... TGAATTATCTGCCGGCTCGCCATATTGCTTT 1825 36 100.0 30 .................................... TGAGAATGGCCTTAGTGCCAACGCATAGTC 1759 36 100.0 30 .................................... AGTACTGGTTAAACGTTTGGCCGTCCATGT 1693 36 100.0 30 .................................... ATATAACCTTATTTGTTTCCTGAAGATATT 1627 36 100.0 30 .................................... AGCAAGTGAGTTAGTGACGCATGAGTTCTG 1561 36 100.0 30 .................................... GAAGCAAGTACAAATCAATCCATATGTTCC 1495 36 97.2 30 ........T........................... GATAGAGCTCCATTTTGTTCTGTAAAATTT 1429 36 100.0 30 .................................... AATGGCAGCGTAATGGATTATCCACACCGG 1363 36 100.0 30 .................................... CACTTCCCCTTACAGTAACAGGGTAATAAT 1297 36 100.0 30 .................................... CCTTCATCGTTACAGCAATTACAAGCAATA 1231 36 100.0 30 .................................... AATGGCAGCGTAATGGATTATCCACACCGG 1165 36 100.0 30 .................................... CGATATCTACAACGCTAAATGGATTCCTAG 1099 36 100.0 30 .................................... CATTCATTTCAAGCCTCCAATACTTTAATA 1033 36 100.0 30 .................................... CTAAAACGTTTCTATCAAACTTATCATTAT 967 36 91.7 22 ...............................C..TG TAATTATCATCTGGTATTTCAA Deletion [910] 909 35 77.8 131 .........T...A.C.......A....-..T..TT GTTGTTTATTAATAAATGATAATGTTAAGTTTGAAAAGTAGTCGTAAGTGAATTTGTATCATGCTAAAATAACGTAAGGAACATATAAATTAATGATTTTATAAATGCTAATGTTGTATTTGTGGGTGTGT 743 36 97.2 30 ..............G..................... AAAGCTTTAGTATGCTAAGAGATTTAGTAT G [711] 676 36 94.4 0 ..............G....................A | ========== ====== ====== ====== ==================================== =================================================================================================================================== ================== 35 36 98.8 33 GTTTCTGTACTCTTAAAGATTTAGCAATGATAAAAC # Left flank : AATTGAAAGATAATGGCAATCCGGTTTGGGTAGTATTATATAATCTTGATGGCATAGTGTCAGTACATAATCAGTTTAATTTCATTAAATCGTTGAAAAGAATAATGGATGATTATGATCTTAAAGTTATTTTTATTGGTAATAGTTTGATGAATGTCCCATTAGATCAAACTGAAGTCGGCGGGATAGTAATTGCTAATAAGGAATTCGAGCAATTGCTACCATACGATGAACTAGTTAAATCTGTTAGGATGAGGTACCCCAATGAATTAAAAGTCGATAGTGATAAATTTGTAGATTCAGTAAAAAGAATTTCTCCTTTTATAGGTAGTGATGAAAATATAAACCTTTCTAGTAAAAATTTGGTATTATTGAAAGTGGTAAATGAGATTTTAAACTATGAGACGTCATATTGTTTAGATGATCAAATACTAAGTAGTGCAGAAGCCGAATTTTTAAGCAATTAGGTTTTGACGTGAACTGTAATTTTTGAATTTGAG # Right flank : ACCACTTTGATCCTAAAAATAGGAAAATCAAAGTGGTTTTTTCTATCAATTCTTAATAGGTTGATAGTTTTTTATTTAAAAATATTCAAAAATATCATAAAGAACAACCATAATATAAACCAGCCAACAGGAGTAATTATCAACAACAAAAATGCTCCAGCTAGTCCAGCTAAGTAATCTCCACCAAATGGTATGGAAATCAAACCAGCTATTATTATAAATATACCAAGGAATGCCGCTACAATACCAATGAGTATCAATATAATTAAACCAAAAGTCGATGTCCAATCAATCAGAGCGTGTATGAATTTTCCCATTTCAATTCTCCATATCAATATAACTTATTAGTAATATTATATGAATAGCGCTTATATAACAATTGGTATGCTCCAATTTTTACATTTAATATTTTATATTTTTTAAATAATATTTTGTGGAATATAAAAGCCACTTTGACTCTTCCAAAAAGGGAAAATCAAAGTGGCTTTTTCTATATCGTG # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTGTACTCTTAAAGATTTAGCAATGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //