Array 1 25461-30734 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHN01000040.1 Brevibacillus agri strain NRRL NRS 1219 contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 25461 32 100.0 35 ................................ CCCGTCCGCCCGTAAAAACAAGAGGTTGGACGTGT 25528 32 100.0 32 ................................ ACGCCAAGATAGCGTTTGACATACTGGTCAAC 25592 32 100.0 33 ................................ GGGTGTGTTCGTGTTGATTTTAACCTTATAAGG 25657 32 100.0 36 ................................ TATACGGGATGTCCTCGATCAATTCTTCGTTGACAC 25725 32 100.0 36 ................................ GTCTTTGCGTCAAAACAAAAACACCTCCGTGACCAC 25793 32 100.0 34 ................................ CGCCAGCAGTTGCTTCGCGCGCTGCTCGACTTGG 25859 32 100.0 34 ................................ ATCGTTGATTAGCTGCACGTTCACTGTCCCGCCA 25925 32 100.0 36 ................................ AGATGCAGACCCCTCAACCGGCAGCGTGTTTCCTTC 25993 32 100.0 33 ................................ TCAATCGTTGTCCGTCGCGGTGCGTAATCGCGA 26058 32 100.0 34 ................................ CGCGACCAACACGTCATCCGCTTCGAGTTCGAGC 26124 32 100.0 35 ................................ TTGCGCAGTCAACACGCGCTCCCCTTTGTGCAGTC 26191 32 100.0 35 ................................ AACGAAGGTGCCGAGGGCGTACGGAAGTTCCAGCG 26258 32 100.0 34 ................................ TCTTGACGATTAACGTTTAAACGTAAAGGACGGT 26324 32 100.0 33 ................................ GACCCGATTGTCCAGTTGGTGCAGGGCGTGTCG 26389 32 100.0 34 ................................ GACGCGAGTCATTAGCGGGCACACCGGGCAGGTC 26455 32 100.0 35 ................................ CTCGACATACCGGCAGAGAAGCACGGGAACAAGTG 26522 32 100.0 35 ................................ ACTTTCGAGGGATACGAAATCCTCGACCGAATTGC 26589 32 100.0 35 ................................ GCGAATAACGGACTCAAAGGGTCTGACGCAGGTAC 26656 32 100.0 34 ................................ CTTAGACTCGATTATGTTACGACGGATTTTTGCA 26722 32 100.0 36 ................................ TCCACTGTCTCTACTATCGTAAAAAAAAGACTCTCA 26790 32 100.0 35 ................................ ATTTCGCTCACTCCTTTGTTTTGTTGACTTTATAA 26857 32 100.0 35 ................................ AATGTTAGCTGGGGTAATTGTGCTGGCGGCGGGGA 26924 32 100.0 35 ................................ CGCCTGACCAGGCGGCGTCGCCCTTGCAAAAGCTG 26991 32 100.0 35 ................................ TATACTTAACCGTTTGTGGCGGGAGTCTTGAGGGG 27058 32 100.0 34 ................................ GACAGGCATTGTCTAATTTTGTCGAATTGGCTTT 27124 32 100.0 35 ................................ CCGGATAGCCCGTTTCGCACCGCCCCTACGGCGCC 27191 32 100.0 36 ................................ CCTACAACGTGACTTAGTAAGTAAAACTGCAAAAGG 27259 32 100.0 35 ................................ ATTAGGCACGTGATGCGATCCCCCTATAACCATTT 27326 32 100.0 34 ................................ AAAAATAAAAAGCCCGCGCTTGGCGGACTTTTTG 27392 32 100.0 35 ................................ ACGCGGCGGCTGGACGAGATGTTTGGTTGCTGCGC 27459 32 100.0 36 ................................ CCCGTCCGCCCGTAAGAACAAGAGGTTGGACGTGTA 27527 32 100.0 35 ................................ CCCGACCCCCGGCGGCAGCCTGTGGCTGCCGCAAC 27594 32 100.0 37 ................................ CTCCCCGCCGCCGCCAGCAGCACAATTACCCCAACTA 27663 32 100.0 34 ................................ CCGATGTGGTAGTTCTCCCAAAGACAAAAATAGC 27729 32 100.0 33 ................................ GCCATTGCAAAAACTTTGGAATAAGTTTTTTAC 27794 32 100.0 35 ................................ TCCCCTTTATAAAAATAAAAAGCCCGCGCTTGGCG 27861 32 100.0 33 ................................ ATAGACTCGGACTTGTAGCCTGCTTTGAGGCGA 27926 32 100.0 33 ................................ TGACCAGCCCGTCGAAGGGTACTTCTGCACATT 27991 32 100.0 35 ................................ AGATTCCCACTCAATACCTACTCCGTAGATGTGAC 28058 32 100.0 34 ................................ ACCGGAGTTTACGGCTACGATGGAGTACCAACTA 28124 32 100.0 34 ................................ ACCTTTTCAAAAGAGGACGACGCACTAATCATGA 28190 32 100.0 34 ................................ TACGGCTGCAGCAACCATCCGAATTGTGATTTTA 28256 32 100.0 35 ................................ AGAGACAATCGGCGCTCCATCTGCATCGTATCGGC 28323 32 100.0 34 ................................ ACCGGAGAGAACCTGGGGATGGCCGGGAAAACCA 28389 32 100.0 36 ................................ ATTTGGGTGAGGAGGAAAAAGGTGATGAGTTAGATG 28457 32 100.0 33 ................................ GCATGAGGGCGGCAGCTCGCGCTCGATCCGCGC 28522 32 100.0 35 ................................ AACGACTGGTACGAGAGTGGAGGTAAGGACATGAT 28589 32 100.0 34 ................................ TATAATTATGTTTTTTAAAGGCTTATTTGTTGCT 28655 32 100.0 35 ................................ CATGTCTCGTAAGCATGCTGCTTGATCTCGTCGCT 28722 32 100.0 36 ................................ CTCCTGATAATGGTCGGGCAGCGGTCGAAGGGCCTC 28790 32 100.0 36 ................................ CGTCAAATCCGCGCACAACCGTAATGACGTCGCCGT 28858 32 100.0 34 ................................ GCCGACCATCCGCTTGATCGCGCCCTGCTCCATC 28924 32 100.0 33 ................................ CGGGAGCTGGCGGAGGAGTTGGCGCCGTTTACC 28989 32 100.0 35 ................................ GATCGGTGTTTACCGGGTAAAGGCGATCCTTCGCA 29056 32 100.0 35 ................................ TGAAAAACTCCATGGTTAGAGCCTCCCTTTGATTA 29123 32 100.0 35 ................................ GCGGATACGGCAACGACACAGAGAGCACGACAAGC 29190 32 100.0 33 ................................ CCTCTTTGCCATGTAACCTCATCCCCCTTTATA 29255 32 100.0 36 ................................ GCACTGTGTCTTTGTTTATTGGAGATGGCGGCAAGA 29323 32 100.0 35 ................................ CCGGAAGAGACGCTGGAGATCATGGAGCAGATTGA 29390 32 100.0 34 ................................ CATAGCCATTGCCGAGGGAGAGCGATGGTTGGGC 29456 32 100.0 33 ................................ CCCCAGCAAGTTAAAATTCGCGTCGATTATTCG 29521 32 100.0 34 ................................ TCCGGGGACAATCAAACAACTGTTCAACTTTTCC 29587 32 100.0 35 ................................ ATCGAAACTGTAGGGCATCGCTCGCTCATCTTGTG 29654 32 100.0 35 ................................ CAATATGGTTGCCAGCTTGGCGGATGGCGCAAAAA 29721 32 100.0 35 ................................ AACCGTCGTTTCTTCGAGCTGGCAAGCACGAGCGA 29788 32 100.0 35 ................................ TAAAATACTCGGCGAACTCGTCCGCCGTGTAAAAA 29855 32 100.0 35 ................................ ACTCGGCGTCAGAGCCTGTGGGCTGTTAAACGTGT 29922 32 100.0 34 ................................ TACCAGTTTTACACCGGCGAGATCGTGAACGGTA 29988 32 100.0 35 ................................ TGTAGGCGATATGAAGAAGTGAATGGTGAACTAGC 30055 32 100.0 36 ................................ TGTTTTTCGGACTGTTTCTTTGTTTATTGGTGATGG 30123 32 100.0 34 ................................ ACATAACCGTGATCGCGATAAGTTCCGCACCCAC 30189 32 100.0 33 ................................ AAATTGCGCCTGGTAAACTGGTGCAATAACGCC 30254 32 100.0 17 ................................ TGCTCCAAGTACGCAAA Deletion [30303] 30303 32 100.0 35 ................................ CTGATCGTTCGACGTTCACGGGATACCGCAATTAC 30370 32 100.0 35 ................................ TTTTGAGGTTTTTGTGTGTACTGGTGATAGTAAAA 30437 32 100.0 34 ................................ AGGTAAAACGCCCCGTCGTCGTGTGGAACCTCCA 30503 32 100.0 36 ................................ CATCTGCTGCATCAATCGTTTTATGTGCTCGATGTA 30571 32 100.0 35 ................................ TTATCGATCTGTGGGGGGATCATCTTGAAGTTGGC 30638 32 100.0 33 ................................ TGCGGGGCGACGGGAAACAAAGGTCCAGACGGA 30703 32 90.6 0 .............................GTA | ========== ====== ====== ====== ================================ ===================================== ================== 80 32 99.9 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TGGATGAGTATCCTCCTTTTTTGTGGAAGTAGGTGAATGGTGTGCTGGTATTGATCACGTATGATGTGAGCACAGTTAGCAGTGCAGGGCAAAAAAGACTTCGCCGCGTCTCGAAAATATGCCAAAATTACGGTCAACGTGTCCAAAATTCCGTGTTTGAATGCATTGTCGATTCCACACAGCTTACTTCATTGAAGCTGGAATTGCTCTCGATCATCGATCTGGATCAGGATAGCCTCCGTATTTATCAATTAGGCAATCATTACAAGAATAAGGTAGAGCATTTGGGTGTGAAAGAATCAATTGATTTAGAGGGGCCATTGATTTTCTAGTGCGAATGTGAAGCGCACACGAATTCCCTGGGGGATTCGCACCCGAAAAACGGGTTAAAATGCCGTTTTTTGTCTGCTTTCTCTAAATTATCTTAACGTATGAATGAATTTGAGCGTATTTTGATTACAAATATGAAAATGAAAGCATATTTGGGGTGAAAATTCGCT # Right flank : AGCGTCAAATAGCCCCCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12026-6818 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHN01000007.1 Brevibacillus agri strain NRRL NRS 1219 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 12025 36 75.0 30 ...T....TTTC...G...T...C...T........ GATGAAAAGGAGCATCAAGTTGGACAAGCT A [12008] 11958 36 94.4 38 .......C.A.......................... ATGTGAAAGATTGGAACATGCTTGCACAAAAGGCGCAT 11884 36 100.0 37 .................................... AGATAATAAATGCCAATTGTAACGATACCGAGTAACC 11811 36 100.0 40 .................................... CAACACAACAATCATGGTTCGGGAATGCCTCAGCTTTTAG 11735 36 100.0 38 .................................... AACTATAACATAACCCAAGCAACCGCTTATAGTTTCTG 11661 36 100.0 40 .................................... ACCAGCGCCTTGTCTGCCATGTATTGCTGTGCCAAAGCCA 11585 36 100.0 35 .................................... TAACCGTAAGCCTGTAACGAAGCGTTCGCTCCAAC 11514 36 100.0 35 .................................... TGGGACGGTGCACAGCAGACCGTAAAAGATGCGTT 11443 36 100.0 36 .................................... ATCTAGTCACCCCAAGGATAATTGTCGTCGTAGTCC 11371 36 100.0 38 .................................... CTCTAGCTTGCTGTCGAAGTTAGCCCTACTGTTGATGA 11297 36 100.0 38 .................................... ATCTGCATCACGGGTAGCAACGCCCGCAGTCAGGTCTT 11223 36 100.0 36 .................................... GAGGATCGTGTCTGTCAACGGGTATTGCACGCTTCC 11151 36 100.0 36 .................................... TATGAGGTTGTCAATGTCGAAAAAGTGCAATACAAT 11079 36 100.0 37 .................................... AGGAAATAAATATGCAGAAATTGAAGATTCGCAAAAT 11006 36 100.0 38 .................................... GGTGAATTGTTGCCAACATTGATTGAAAAAATTGATGA 10932 36 100.0 35 .................................... AAATGATAGTCAGTAAAGTCAGTATAGACCCATTT 10861 36 100.0 36 .................................... GCGAAACGACTTCTTTTTCTACATGCGCTGCCCGAT 10789 36 100.0 36 .................................... GAGTCCAACAACAAACGAATGGGATCGTATTATTGT 10717 36 100.0 34 .................................... AATACTGTTACTGGCAAAACAATGAGTTGCTTGT 10647 36 100.0 40 .................................... CTGAATTTCATCGTGAATGTTTGCAATCATTCTTGTTTTA 10571 36 100.0 37 .................................... ATTCAGCTTATGAGGAAAAAGGGGCTTTCCATCGGCG 10498 36 100.0 39 .................................... GATCAACTCCTTTACTTCCGAATTTTAAAGCGAAAAAAC 10423 36 100.0 34 .................................... CGCTAATGGACGAGTACGCCCGCGCCATCCACTC 10353 36 100.0 36 .................................... TTCCCTATGGACATTCAATATTTCGCGGAAGATTCC 10281 36 100.0 38 .................................... GAAACATGATCCAGTGGCATAAGAGTGGGCCGCGACAG 10207 36 100.0 35 .................................... CTAACGGTCAGCTTCTCACCCTCCCCCATTGGGAC 10136 36 100.0 39 .................................... CTGCGTCTATATCTCGCATCGTGTGTACGGCCTCTTTCC 10061 36 100.0 36 .................................... TTTGCCGCTATCGGAGGATGATTTGCGATATGTCGG 9989 36 100.0 44 .................................... GACTTTACTTGCACAAACGATAGCAGTCGCTTTGTTTTGGTGGG 9909 36 100.0 35 .................................... TTAGAATTTCGTAATAGCTGTCCTGCTTATTCCCG 9838 36 100.0 36 .................................... GGTAAAGTAATGTTTCTGATCGACTTTTCCGGCTTC 9766 36 100.0 37 .................................... GCGGATGTAACCGAGCAGCAGCGACTGGAGCAGCAGC 9693 36 100.0 36 .................................... ACAACTCATCGTGATCGCCCGTCGGCATGAATATCG 9621 36 100.0 38 .................................... CTGATAACCAGTATTTTTATGATCGCTGGAAAGAGTTG 9547 36 100.0 34 .................................... CCTGCCTGTCGCTCTAGCATTTCCTGCTCTAAAG 9477 36 100.0 39 .................................... CAGGAAACAGATGGAGCGCCGACTAGCTCATAAAAATGA 9402 36 100.0 36 .................................... AAAGAGGCTTCAAACCCTAGAAGCATTCCATTTTGC 9330 36 100.0 35 .................................... TTGTTGAATTCGTAGAACTCTTCGATAGCACGCAC 9259 36 100.0 38 .................................... TACTTTTTTTAGGTATAAAAGACCAAAACGTTCGACAT 9185 36 100.0 35 .................................... GATGCCTTCCACTCATCAACACGCGCCTGCAAATA 9114 36 100.0 34 .................................... GAAAAAAGAGAGAGAACACAACGGAAATCAGAAG 9044 36 100.0 41 .................................... CCGTACTGGAAGCGTTCAGCGATCATGCGAAAACGGTACTT 8967 36 100.0 38 .................................... CTCTTCTCTGAAAAACATTATGGCACTCGTCGGACAAG 8893 36 100.0 37 .................................... ATCCAACGACGGAACTTCCCGCGCGATCAACGTCCAA 8820 36 100.0 40 .................................... ACGGAGCTTTGGGAGCAAGAACGGGTGTTTGATTGCGATG 8744 36 100.0 37 .................................... GAGCCGCAAGACCTGCGACACCGAGCGCAGCACCCAC 8671 36 100.0 35 .................................... TCAGCAAGCCAACTGGCAGGACGAAGTGGCGAAGG 8600 36 100.0 39 .................................... AATGGTTTTGCGGTCGATAATTTCTTTCCCCGTGCGCTT 8525 36 100.0 39 .................................... CGACCATTACGAGAACTGACATCCAACCGTTGCTGGATC 8450 36 100.0 39 .................................... CAGGATACCGTCCTTGTTCAACTCATCAAAAAATGACGA 8375 36 100.0 38 .................................... CCTACACCAGTGAACACCACGGCACGATAACGTACAGA 8301 36 100.0 34 .................................... CGCAGATGACGCGGTTGATCTCCGCCATTTCGTC 8231 36 100.0 42 .................................... CAGTTACCGTTTCCCCAACGTTATACCTGGTCTTGTCTGTAG 8153 36 100.0 36 .................................... TGAGGTTGTTATACCTGATGCTGGTGCTGGTACTGC 8081 36 100.0 39 .................................... GATGTGGCAATCATCCTGTCTCTTAGGAGGTTTTTGCCA 8006 36 100.0 35 .................................... TCAGGAACCTTTTGCGCTCACGATCAAAATGTTCC 7935 36 100.0 39 .................................... GGCTGAGTTAATGGCGCGTTTGGCTTATTTGGAGTCTGA 7860 36 100.0 36 .................................... TCAGCTCATCCAGGTTCACGTTCAACAGGTGCTTGT 7788 36 100.0 39 .................................... TTACTTACAAACTCCATTCTTTGTCATCTCCTTTTAATA 7713 36 100.0 36 .................................... TGTGACTTGCGTAGTGTCCACCGTCGGGTCAGCCGC 7641 36 100.0 38 .................................... TGAAGATGGCTGTGATCGCCTTAACGAAAAAGATCTTG 7567 36 100.0 34 .................................... GATCTCATCTGTAAAGTCTATTTGGCATCGATCT 7497 36 100.0 35 .................................... TCTAGGGCTTGAGAATTTATTTTTGATACTATTGT 7426 36 100.0 35 .................................... GCCGCAACGTGCGCCGGGAGAGGCGCACGTTCAGA 7355 36 100.0 38 .................................... AGCGCCGCAACGTGCGCCGGGAGAGGCGCACGTTCAGA 7281 36 100.0 35 .................................... CATGCCAATAAATGACGGGAGCATTCCTGCTGCTA 7210 36 100.0 37 .................................... TTCCGTTCCCACCGAAAATCTTGCGCGCATGCACGTA 7137 36 100.0 34 .................................... GACTTGGAACGAGGCGGACGCGTTTACGTGGAAC 7067 36 100.0 35 .................................... CGCGAGCCCTGCGGACATCGACAAGCGGCCCGGTT 6996 36 100.0 36 .................................... CGCCGCAACGTGCGCCGGGAGAGGCGCACGTTCAGA 6924 36 100.0 35 .................................... GCCGCAACGTGCGCCGGGAGAGGCGCACGTTCAGA 6853 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 72 36 99.6 37 GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : TCGCTTGTCCATGACGTTATTTCCTTTCTTTACTAAGTATGATTTTTGAATTTCAAAAAAATCGAACATCTATAAGGTATAATATACTATCAATACTAACAGCTATCAATTCTTTATTTAAAAGAGATTAAATGCTTGTTGCATTTTTCTTCATGTACTATACTTACTAATACGAATTATAGGTTCGTCTAACTTTAGTGCGTGTGCATTGGGTGATTCAAACAATCACTTCTCCACTAGAAGCTTATTACAAAGCTTGCACTTTATTTACAAAGAGAAAAGCCAATGCTCTCCCTTTCCAAATGAAACCAGTTTTCTTTTAATCCATTTTTTGCCTGACTGCTTCTTTTTTGCAAGAAAACGTATCGAGCACCTGTAAACCTCTCACTATGACTATTGAATTTGGTATATATTATTATCAAGAGATCAATGATTTTGAAGTTCACTATAGGTTATTTAATAGAAAGATGCCCCTAACGTAAAGCAGGGGCATCTTTGAT # Right flank : CCCTGTCTTCTCAATCCCTTGATTCTCAGGCTTTTCTCAGCCCGTTTTCGAGCAGTCTTTTTTTAGGTACCATTTTTCTTGAAATTCAAGGAGCTTTTTTCTTTCCAACTCAGTTTGACGCCTACTCTCCCAACGCTTGCGAGCATCCTTGGCGTTTTTAGGGCTGGGAGATTGCTCGCGTCTTCATTTTTCGAAAGCATAGTGGAAATTCGAAATTATCCGTGGGAATAGACTTGTAGAGGGTCTATAATGCACACGCACGGAATATCAAAACGGCCTGTCGCCTCTAGCATACGGCCGATACTTATATCTTACTTTTTTTCCAAATACAACACAACCGCGATTTGATCCACCCTGTAGAAAATCACCACTCAAGACCTCACTCCTTTCAAGTCGCTATTATAAATATTAAAAAACCGACCTCATTCTCTTGCGAATGAAGTCGGCTCTCCACTCTGTTTCCTGCATCAAGAACCGAGGCAGTCATCCTTTCGCTTGAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 20762-18248 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHN01000007.1 Brevibacillus agri strain NRRL NRS 1219 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 20761 36 100.0 40 .................................... TAGAACCTGATAAAGAGTATGTATATCGTTTTGTTGCTGA 20685 36 100.0 37 .................................... ATTGACCACTCCGGCGTTCGCCGACTCCGGGGGAATG 20612 36 100.0 37 .................................... ACGTACCGGCGTCCGAACCCTTCAATCCGTTGTTCGC 20539 36 100.0 37 .................................... AGTGCCGATTTTTGATGACGTAACGAAGTTGAATAGA 20466 36 100.0 40 .................................... CTGCCTGCCCGAAAACGAAATGGGCTACCATGTCGGGGCC 20390 36 100.0 38 .................................... CAGGGTATCCGGGAGACGAATTCGACTATAAGAGTGAG 20316 36 100.0 35 .................................... GTCCAAGCACGTACTGACGGTGACCAAGCTATTCG 20245 36 100.0 35 .................................... GCCGCCTTGCGGGAGTACATGAACACCATCATTAA 20174 36 100.0 36 .................................... TTCGCTCCTTCGTTGATTTCTTGTCTTTATTATACT 20102 36 100.0 37 .................................... AACACCTCACCCGTTGCGCTACTTGTCCGGTCACTTA 20029 36 100.0 34 .................................... GTGCGGGTGATCTTATTGCCCGTATCGACTTCGA 19959 36 100.0 36 .................................... CGAATTGGATGAGTATGCAATGGCTGAAGCCGACAG 19887 36 100.0 35 .................................... GCTGCCGGAAGAAGAATAGGAGGGATTGTATCATG 19816 36 100.0 35 .................................... ACCTGAAGGGTAAGAACATGAAGTGGCATTTACTG 19745 36 100.0 35 .................................... GTAAACACCAATGGAAGGCAACAATCGTTTGTTAA 19674 36 100.0 34 .................................... GGAGCAGCGGAAGCAATTCGACTCTCTCTATCCG 19604 36 100.0 40 .................................... GGCCTATGTTGGAGTCCTTTGTTACGGTATTACTTGGTGA 19528 36 100.0 37 .................................... GGAGGGAGATTAGATGCCAAACGAGTTCAACGAGCAG 19455 36 100.0 37 .................................... CGAGCGGCAGCAGGCGCAGCCGCAGGGCGAGAAGCCC 19382 36 100.0 37 .................................... TCTGCCGCGAGCTGGCCGAGCGCGAACAGGGTTGCGA 19309 36 100.0 38 .................................... GTCGATTCGTCCCGTGTTTTTGCTTTTGACCAGTTTCA 19235 36 100.0 36 .................................... TCTATGTTATTCTATGGGTGTCGAAAGGACGCTATC 19163 36 100.0 34 .................................... GACCACGGCCTTGTTAGCTTGGTGCGAGCGCGAT 19093 36 100.0 39 .................................... AAGAGACAGGATGATTGCCACATCAAAAGCCAGTATCAA 19018 36 100.0 34 .................................... GACTTGGCTATCGACGACTTTGGACGTATCGACC 18948 36 100.0 37 .................................... GAATGAGTAGCATGGGACAGTTTTTTATCGACCTTTT 18875 36 100.0 37 .................................... TGTGGCAATCATCCTGTCTCTTAGGAGGTTTTTGCCA 18802 36 100.0 40 .................................... ACGTTACTTAAATGCTTTACTTTTGGTTGCTACTATCGTA 18726 36 100.0 38 .................................... AGCGCCGCAACGTGCGCCGGGAGAGGCGCACGTTCAGA 18652 36 100.0 38 .................................... GTGATATGATTATGTGTTTAAAATGCTTCCCGTAAAGC 18578 36 100.0 39 .................................... TTCGTATAAATACATGTTACAATGTCTAAGAAATATTCA 18503 36 100.0 40 .................................... GCGCACGTTGCGGCGCTGCATGACGGTGGTCGAACCGTCC 18427 36 100.0 34 .................................... GGACAAGGCGAAACGGTCGATATGGCATCCTTCC 18357 36 100.0 38 .................................... CGAACGAGCAGGAGACGACGATTCGTGCATCGTCACCG 18283 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 35 36 100.0 37 GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : CGAAAAAAAGCTTTTCGACTTTTTTTGTTGGACACGTGGCAATTGTAGGACCGGACTACGATATCATTCACGTTCATCCAAAAGGACCTTGGTTCGTTGAAGATATCGATTACTATGTATCTCGATTTAGGGACGGCGATAAGATCGAAGTTCTCCGTCCCAGGAGTGGAGCTTCTAAAGCTGCTAAATGGGCAATCAACCATATTGATGACGTAAAGAAATACTACTTCAATATGGATTTGGATAATATTGAGCTTAGTTATTGTTCTAAGTTCATCTGGCAAGCATTTTACTATGGTTATAATCTCGATATTACCGGCATGGGTCTTACCGATCGCAGTAGAGCAACCCATATTTATCCAAATGATGTTCGAGATTCCGATCACCTTGCATCAACAGAAACCATCGACGTTGAGAAGTAAGAAGCTGAAACCTCGCATTAGCGAGGTTTTTTATTTGAGCGCCGATTTAAGATCTCAGTAGTTTAGACGGACTTTAGC # Right flank : TCCTTCCCACTCAACCCCTACAGCCGCAAGCCTTACAGACCCGTTTTTCGAGCAAGCCAAAATTCAATCGCCATTCCTCTTATCCATCGGCTGCCTCTTCCCCTAAAAAACTCTGGAAAGCCTACGCCCACAAAGAGTTCGAGCATCCCCCGGCTTTTTTGACCTGAGAGGATGCTCGCATCATAAAATTCGAAAGCTTAGTGGAAAGTCGTGATTATCCGTGGGAATAGACCTGTGGATGGGCCCATAATGCACACGCACGGATATGTAAGTCGACTTATGGCCTATAGCGTGCGACTGACACCTTTATTTTACTCTTTTTCCACTTTTGTTACAACTAGCTTTCTTCATTCCTTAATAGATAAATTTGGTCAAATCGCGAGGCAGAAACTCCCTGCCAACAGTAGAAATCCGCTTGTCCAGTTGATCTCTCGTCACTGGGCCGATTTTTACAAACATGACCTGGTCTTCTCCATGGTGAACCAGCTCCGCCAGGCTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //