Array 1 11038-7211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPP01000155.1 Methanosarcina mazei strain 3.H.A.2.4 scaffold10_1_size68618-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 11037 37 100.0 38 ..................................... CTATATATTATAGTATGACCCTGCCCGTCAAATATTAC 10962 37 100.0 35 ..................................... TCTGAAAATAAAGTTTGGTTCTCAGGATACACCGG 10890 37 100.0 37 ..................................... CTCTCTTTCCTGCTTCGCCTGCCTGTAAGCCTTCCCC 10816 37 100.0 36 ..................................... ATTACACCCTATTATCGTGTAAGTTGTTGTTTTTTT 10743 37 100.0 37 ..................................... AGATAGTATCAAGTCTCACACTTCCCATATAGGTTAG 10669 37 100.0 36 ..................................... CCTGCTCCGAGTTCTTAACCGGATCGTCAATAATAA 10596 37 100.0 35 ..................................... TTCGCCTTGGATATCGAGGACTGAGATAATGCAGG 10524 37 100.0 31 ..................................... AGTGCAGTTCTGCCAGCATCCTCCACGGAAG 10456 37 100.0 36 ..................................... CTATATAATCCTCTGCCTCCGGTCTTACTTTCCCAA 10383 37 100.0 35 ..................................... TAATTACTCGCATATCTCGCAAAAAAAGCAGGATT 10311 37 100.0 36 ..................................... AACATTACCGGAAGCACCTGAAGAATGCAAAGATGT 10238 37 100.0 36 ..................................... TAATATGTTTTCAATAGGTCAAAAAGTTGAAACAAA 10165 37 100.0 37 ..................................... TCAGAGAGATTCTCACATTCATAAGCTATTTCTTGAT 10091 37 100.0 34 ..................................... AAGGCAGCGAAGAGGCTTATGATTGAATCTCTGA 10020 37 100.0 33 ..................................... TTTCAAGATGAATCTCTTAAACTCGACTCCACG 9950 37 100.0 35 ..................................... TCAAGCCATTTGAAAAGCCTTATACGAGTCTGAGA 9878 37 100.0 34 ..................................... ATAAGATGACATACACCGAAACAGAAAACGAATT 9807 37 100.0 35 ..................................... ATGTTATAGGAGTATGCAGCATTAGCGGGTTAAGT 9735 37 100.0 38 ..................................... TTATGATGCCGGAATACCGCAATGAAAAACCATGCGAT 9660 37 100.0 37 ..................................... CCTGCTTACACTTGAAGAGTACGAGAATCCTTCAGAG 9586 37 100.0 37 ..................................... ATTTCTTCTATAGCCTGAGAGTAGAGTTTATTGTCCT 9512 37 100.0 35 ..................................... GGAAAATCACCATCAATCCCGGCTTCATAATAATT 9440 37 100.0 36 ..................................... TTTTAAGATAGTCTCGGTGTCTTTCTTCTAAAATAA 9367 37 100.0 38 ..................................... GATAGTGTCATATTGAAAACCGTCACCGACTTTATCAA 9292 37 100.0 36 ..................................... ATGGCATAGTATAACCTTCTGTAAAAAGTAGATAAA 9219 37 100.0 34 ..................................... TACCTCCATCCTCTCATATGCAGTTTGTTGGCAT 9148 37 100.0 35 ..................................... GAAAGATGAGGCTTATCTATGACTGAAAAGAACGT 9076 37 100.0 36 ..................................... GGTGATCCAGGTGTAGCCAAAAGCCAATTTTTAAAG 9003 37 100.0 36 ..................................... CAGTTATGCAACCGTTAGAAACATCATCAAAGGAAG 8930 37 100.0 38 ..................................... ATAAAATGACAGAATGGACAATTCAAAGAGAGTACGGC 8855 37 100.0 37 ..................................... TATTCGATCCCTACAAATATTACATGCATCCATCCAA 8781 37 100.0 36 ..................................... AAGTTATATTGGTAGCGTCCATTGCCATACTTATAA 8708 37 100.0 35 ..................................... AATTCGGATTTTTCAGAATCGGATAATTTAGAAAA 8636 37 100.0 37 ..................................... CTGTTAATGCACCCTGCTGTATCATAACCTCATTTAC 8562 37 100.0 36 ..................................... TCCCATGTATGAGTACATATTGACCGGATTTTCTAA 8489 37 100.0 37 ..................................... GGGAAAACTGCACTTACTTACATGGATGCAAACGGAA 8415 37 100.0 38 ..................................... GTTCCATGATACAACTGCTTTTGATATTCGTATATGCC 8340 37 100.0 38 ..................................... CCGGACAATGGGGCATCTGCACATGCCACAAACAGTCC 8265 37 100.0 35 ..................................... ACTACCGGCTGAGTGTACCCGTCTTCCCATATTGA 8193 37 100.0 35 ..................................... AAAGAAATCAGACCACAACCCGGGCCACAAGAACT 8121 37 100.0 37 ..................................... ATAATTACCTCCCCTCTCATATTAATATGTTTGGTAG 8047 37 100.0 35 ..................................... TTATCCAGAGGATGAGAAGTAGGTACATTTACAAT 7975 37 100.0 36 ..................................... TATAAGTTACTTTCGTAACCGGGGATGTTGCATTAT 7902 37 100.0 37 ..................................... CCCTCCTACATCTCCCTCTAACAGTTGTATTTTCTGC 7828 37 100.0 35 ..................................... AGTTCAGGAATTTTGGGAACTGTAACAGAAGCAGG 7756 37 100.0 34 ..................................... ACAGGTTGAAAAAACTGATCGAAACTATTGATAC 7685 37 100.0 36 ..................................... AAACGGACTTGCATCCTCGATGAGGGTAACGTCACA 7612 37 100.0 36 ..................................... GCTTCCACCTACATTGTAGAGGTCGCGAAGGCTGAA 7539 37 100.0 37 ..................................... TTTTCAGTCCTTTTATTTTGATGTCTTTTAAAGGGAA 7465 37 100.0 37 ..................................... AGTTAAAGCGATGTTTCAATAATTCTGTATCTGTGGG 7391 37 100.0 33 ..................................... ATTCTGACAGGAGTTACATCTGCCCCCGATACG 7321 37 100.0 37 ..................................... TTTAAAGTAAAACACGAACGCATGAATGCACTAATAG 7247 37 83.8 0 ..T.....T.A.....................A.G.G | ========== ====== ====== ====== ===================================== ====================================== ================== 53 37 99.7 36 ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Left flank : GCATCCTCATTTTAAGTATCAGGTTTCCCGAAGAAAAGCGGTCAGGATGCAGGCAATATTACTACGAAAAGCTATCACAAACGAACTTCCTATGTATTATCCTCTGGTGTTTAAAAGATGAGGCTAGTAGTTACATATGATATAAGCGACAATAAGATTCGTAACAGGGTTTATAGAATCCTTGAAAAATACGGTGCATGGAAACAGTACAGCGTATTCGAACTTGATATTACTGCAGTGCAACGTGTAGAAATGGAAGATGAAATCAAAACAGAAATTGAGTCTACTGATAAAGTACGCATCTATAGCCTTTGTGACCGTTGCGTAAAAAATATTGTAGACATCGGCCAAAAGACTCCAGATAAAAAGTCAAACATTGTTTAACAGCTTTTTACATTGATGTTTATATATTCTCTGTACGCAAGAGGTTTGGGAATTAATGATTATTTTTTGAGGTTTTAGAAAGGGTTATTACGAAAAAAAACCCTTATTTTCATGCC # Right flank : CCTATCCGAAAAATGTTGTTACCTGTGTAGATGCCCGACATTAATATTTATCGAAACTTCTACAACAGCCAATAGTATATCCTAAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 21122-26732 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPP01000017.1 Methanosarcina mazei strain 3.H.A.2.4 scaffold36_1_size53364-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================= ================== 21122 37 97.3 35 .....T............................... ATCATCAGGATAATCAAATGTAACCCACCCAAAGA 21194 37 97.3 36 .....T............................... ACGATTACTCGTTGCGGGTCCAACTGCGAAATATGC 21267 37 97.3 37 .....T............................... ATAGGTTGACTAAATTCAAACGTGATGAGGAAGAGAA 21341 37 97.3 37 .....T............................... AGTCATCTACCCTGATTGATTGATGGGGGCTTGTTAC 21415 37 97.3 35 .....T............................... ATTGTCATCAGTGTACTTTCTATGACCGGGGTTAT 21487 37 97.3 36 .....T............................... GTTGCAAGGAGATTCTTGCAGCCGACCTCTTTTGCT 21560 37 97.3 35 .....T............................... ATCATAATGGATGCTGTGTAGACATCCTCGGTAAT 21632 37 97.3 34 .....T............................... TTGTCTGGGATTTTATACCAAATTAAAAACGTTG 21703 37 97.3 36 .....T............................... TCAATATACGGAAGTTGAGCTAAATTTTCCATACCT 21776 37 97.3 35 .....T............................... GATTTTGACGGACTGCACAACATAAGCCGCGAGAG 21848 37 97.3 36 .....T............................... ATTACTTTCTTAATTTTATAATCTCCTTACACTTCC 21921 37 97.3 36 .....T............................... GTATATCCTGGGTCATAAGCCATCTCAATCACCCTT 21994 37 97.3 35 .....T............................... CTTCTAGTATTTTCACCTTGTTTCTCAGCGCATTT 22066 37 97.3 34 .....T............................... CGGATACCTGCAACCTGATTATATCGTCAAAATT 22137 37 97.3 35 .....T............................... GTTAAGGCGTTGTGCCTTGAGGTGAGAATAACATG 22209 37 97.3 36 .....T............................... TGGTTGATGTATGCGGTTCTGCCGGGAACATAATAA 22282 37 97.3 36 .....T............................... TTGAGATCCATTTCCATTCTCCTTCGGGCAGTTCTC 22355 37 97.3 37 .....T............................... ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 22429 37 100.0 35 ..................................... TAAAGTGTTTCTGCTAGACCCCAAAAATGCCCGAA 22501 37 97.3 38 .....T............................... CCACGTTTTCACATCCGAAGCGTTTTCCGCATTTCGTT 22576 37 97.3 35 .....T............................... TATAGATAAGGATGGGATTTACTGGAATTTTTACA 22648 37 97.3 35 .....T............................... TTTCAACTCACCTTCGATCTCGTCGCGGATGTAAT 22720 37 97.3 37 .....T............................... GATATACCTTATAGTGTATACGTTAAAGGTACACCGT 22794 37 97.3 37 .....T............................... TAAAGCTTCGCTTAATTTTCCGGACAACCTTCGAAAA 22868 37 97.3 34 .....T............................... TCCGGTTCGCCTGGTCGAACGCGTCGAGCGTCCT 22939 37 97.3 37 .....T............................... AGCGCTAGACCACGCACATATAGTATATCCTTAAAGT 23013 37 97.3 38 .....T............................... AGGATATACTATAAACGACGTACTTTAAGGATATACTA 23088 37 97.3 38 .....T............................... ACTGACTGTTTTCGCGATTGAATACATATACTTACGAA 23163 37 97.3 36 .....T............................... ACTCTAAAAGAACTCGGTTTGATCACGCTGAATCTA 23236 37 97.3 37 .....T............................... GCATTGAAAGCACAATGGGAATCTAAAGCACAAATCA 23310 37 97.3 36 .....T............................... CGATCCTTATATCTCCTGCGTCTGTTGCTGTCATGT 23383 37 97.3 38 .....T............................... TTATCCCTGGAAGATGTAAATCTATTCAGGAGAGTAGA 23458 37 97.3 34 .....T............................... TCGCCCGGCTCCTCCTCCTGCCGCTGTAGTATAA 23529 37 97.3 38 .....T............................... GATACTGGCGTTATACAGTTTTGAAGTTCGAAAATACC 23604 37 97.3 38 .....T............................... TCTGATATAATGAAAAATGCCTTCGAAGATGCAAATAT 23679 37 97.3 35 .....T............................... TTCGCCTCCCTTACTCGACCAATGACACATAAAGC 23751 37 97.3 36 .....T............................... AGCACGTTTCTGAGCTGGAAGCCGATTATAAAAACT 23824 37 100.0 38 ..................................... CATGGGATTTCGCTATCTTCATAGCTTCTTCTGTCTCT 23899 37 100.0 34 ..................................... TTTGTGAAGCCACTATTCCAGCATCGCTAAGTCC 23970 37 100.0 37 ..................................... TAATAATGTGTTCGACGGTTGTTCAAATGCGGGAATT 24044 37 100.0 35 ..................................... TATCATTGCTATAGATGTCTCCCCCGACAACATCT 24116 37 100.0 34 ..................................... TATCTTTGAAAAAATCCGTATGTACGGGAAGCTT 24187 37 100.0 40 ..................................... ATTAGTCCATTCTTTGATTAGAGTTTCGGTTCCTGATCCA 24264 37 100.0 37 ..................................... TCTTGTATCCTATTTCAGTAGCAATTGCCTTATAGCT 24338 37 100.0 34 ..................................... TTTCCGAGGCTGATAGAATGGTAGGGCTCGAAGG 24409 37 100.0 34 ..................................... CAAATGTCTGCATAGGCTCAGACATGCCCGCAAA 24480 37 100.0 35 ..................................... CATTTTACAACATTTACCAAGCCTGATTATGAGGT 24552 37 100.0 37 ..................................... GAGGTTGAGTTCTCCGATTCCGGGCGAACGGGGCAAA 24626 37 100.0 34 ..................................... GAGTTAACGTAGCGTCTTCATAAGAAGAGGCAAT 24697 37 100.0 36 ..................................... AAATTGGAACCCAGAAAGATACATCTATCTCACTTT 24770 37 100.0 35 ..................................... TGTTCTTTTCGAGTGTTGTTTCTACTTTCTTCAGG 24842 37 100.0 35 ..................................... TATTGTTTTCTGCTTCTGCTATCCGTTTTTTATAA 24914 37 100.0 36 ..................................... TACATATACAATCCACACACAGGACACCTTTTTTTA 24987 37 100.0 34 ..................................... CCCGTAACTCCATTTTCTGACATTGACGATTCTT 25058 37 100.0 34 ..................................... TGGCGACTGTTGCCGGGCTCATGGCAATAGAGGA 25129 37 100.0 37 ..................................... AGAGTCTGCCAAACTGGGATAGCGCGATTTCTGAGCC 25203 37 100.0 35 ..................................... TTGAAAAGGGTATTATTCGAAATATGGATTTTGGT 25275 37 100.0 37 ..................................... TTCTCAGGATATTCAGAATCCAACTCTAGCAGGTCAT 25349 37 100.0 36 ..................................... ACTTTAAGGCGGGAAGTCCCCTTCCTCGCCATCAGG 25422 37 100.0 34 ..................................... AATCTGAAGTGCCTCAGCTTCGGTATGATGTTGA 25493 37 100.0 34 ..................................... TGACTAAAATGCTTGACGGAATTATATCGGATTA 25564 37 100.0 35 ..................................... ATGTCGTTCCTGCCATTGACCCCTTGACACCTGAG 25636 37 100.0 36 ..................................... TTTTACCGGGGATGTGACAGTCAGGGAATACGGCAT 25709 37 100.0 35 ..................................... TGTAAATGGTACACTCTCTGAGGAAACGGTAACAA 25781 37 100.0 38 ..................................... TTTTGCACCTACGCTTGAAAATTTAATAGATTATGTAA 25856 37 100.0 36 ..................................... TTATAGAGAGCTTTTCTTCTGTATTTCACAACTAAG 25929 37 100.0 41 ..................................... ATTGTGCACGTTTTTCTTTGCGTATTCGGTTTTTGCTCGGT 26007 37 100.0 34 ..................................... TTAGAATTAAATATTCACCAAAGTTTAGTTTTTT 26078 37 100.0 35 ..................................... TGGCAACAACAAAACAGAAACAGTAAAAAGCAAAA 26150 37 100.0 35 ..................................... TACAAATCCTGGACATTTCCAGAATATGAATTCCC 26222 37 100.0 38 ..................................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 26297 37 100.0 34 ..................................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 26368 37 94.6 71 ...................................GT CGAGAAGTAGCTTCCACTAAAACAAGGATTGAAACCTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 26476 37 83.8 35 TG.......T.GCT....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT A [26481] 26549 37 86.5 34 .G.......T.GCT....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT A [26556] 26621 37 83.8 36 GG.......T.GCT....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC A [26626] 26695 37 81.1 0 TG.......T.GCT......................G | A [26700] ========== ====== ====== ====== ===================================== ======================================================================= ================== 77 37 97.8 36 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : GTTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAGAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //