Array 1 15641-14939 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFT01000014.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2179 NODE_14_length_160841_cov_5.04103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15640 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 15578 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 15517 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 15456 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 15395 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 15334 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 15273 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 15212 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 15151 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 15090 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 15029 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 14968 29 96.6 0 ............T................ | A [14941] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33331-31900 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFT01000014.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2179 NODE_14_length_160841_cov_5.04103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33330 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 33269 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 33208 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 33147 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 33086 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 33025 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 32964 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 32903 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 32842 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 32781 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 32720 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 32659 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 32598 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 32537 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 32476 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 32415 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 32354 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 32293 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 32232 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 32171 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 32110 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 32049 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 31988 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 31927 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //