Array 1 120136-123605 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYWS010000003.1 Lactococcus piscium strain BF1 NODE_3_length_259584_cov_92.427227, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 120136 36 100.0 31 .................................... TGTGTTTTAGTAGTGCGTATTCCATTAATGT 120203 36 100.0 30 .................................... GTTACATCAGCAGGAATCTCTACTGTAATT 120269 36 100.0 30 .................................... ACGAACCAAAAACTAAAGCAATTGAACGTT 120335 36 100.0 30 .................................... TTTGTTCTGCAATAGTCGCATCAAACTCAA 120401 36 100.0 30 .................................... AGCGCTAGACCTGAACACGTCGCAAGATTT 120467 36 100.0 30 .................................... CATAAGCTTCGTAGTATACTCGCCAATCTT 120533 36 100.0 30 .................................... TCGGTTTAATCGTAGCTTTTCAGTCTTCGA 120599 36 100.0 30 .................................... CTCAATCGCCACTCCTTGGATGCCCTCAGA 120665 36 100.0 30 .................................... CATCATCTCAGACGTTGTCTTGACCATGTT 120731 36 100.0 30 .................................... GAAAGAAACTAAAGCTTATACAGACTTAAA 120797 36 100.0 30 .................................... AACTCAATAGCAGACTGCCATTCACTGTCT 120863 36 100.0 30 .................................... GCAAGTCGTTAAAGAATGGTTAGATAGACC 120929 36 100.0 30 .................................... TAAAAGCATTGGCAAGAAGGCGTTTAATTT 120995 36 100.0 30 .................................... GATAAATAAAAAATTATCTAAAATAGACGC 121061 36 100.0 31 .................................... CTAATTTTGTGTTATGAATCATGTATCAGAG 121128 36 100.0 30 .................................... TAGATACGCGATTCCTTATTTGTGCTTTGA 121194 36 100.0 30 .................................... GCAAATAAAGCTATTGAAGAATTAATTAAT 121260 36 100.0 30 .................................... TTTGTTCAAACACAGTGTTATCAACAACAA 121326 36 100.0 30 .................................... AAGATAACTTTCACGTTGTCCCATAGTCCA 121392 36 100.0 30 .................................... TTTTTGAAGTAATTAGATATAATCAGGTAG 121458 36 100.0 30 .................................... ACGATTCACTTAAAAAACTTCCTTTTCCAG 121524 36 100.0 30 .................................... AGCCACAAGAATAGGCTAGAATAGGAATGA 121590 36 100.0 30 .................................... TTTGTTCAAACACAGTGTTATCAACAACAA 121656 36 100.0 30 .................................... TAACGCTAGTCTTTCCTAGCAGTCAGTATA 121722 36 100.0 30 .................................... TAATGTTAAGTCTGATAGCAACGAAAACGC 121788 36 100.0 30 .................................... ACTTATTTTCTTTACGGTATTTACTACTCA 121854 36 100.0 30 .................................... GATTAGACGATTCTAGCTTTCTGAGAACTG 121920 36 100.0 30 .................................... TAAAATTATTTGACTTGCTCTCGCCGTATC 121986 36 100.0 30 .................................... AACTAAAGTTACAATGACAGGAGCAGATAG 122052 36 100.0 30 .................................... TTCAATAAAATCCTTCATGCCGCTGAGTTT 122118 36 100.0 30 .................................... ATTGTAGATGCAGCGACTTTGATATTCTCC 122184 36 100.0 30 .................................... AATTTGTAGCGAATTAGATGGCAAGGTGTT 122250 36 100.0 30 .................................... TATGCCTTACCCTTATTTCAGACAGCGGGG 122316 36 100.0 30 .................................... TATTTACCTCGGGATTGATGTCAACACAGG 122382 36 100.0 30 .................................... TTAGTCCTGGTCGTATTATTTGGGACAAAG 122448 36 100.0 30 .................................... CTCTCTCGCTCTACTCTCGATTCGACATCG 122514 36 100.0 30 .................................... GATACTCAGGTGTTATATGTAACACTCTGG 122580 36 100.0 30 .................................... GATTAGACGATTCTAGCTTTCTGAGAACTG 122646 36 100.0 30 .................................... ATATGCAATGTAATGAAGTAGAACGATTCA 122712 36 100.0 30 .................................... TCGCTTACAATACCCTTGCCATCTCCATAG 122778 36 100.0 30 .................................... AATTCAACGCCAATAACTTTGCTAGCGACA 122844 36 97.2 30 ..............................G..... GTTATGCAAAGAGTATAAGCGAGACGACAA 122910 36 100.0 30 .................................... GATAACAAGAATTGACAAAACAAAAGTTTA 122976 36 100.0 30 .................................... AAAGTTTAATTAGGAACATAGACGACTATT 123042 36 100.0 30 .................................... CAAGACTAGATGCTTGTGTCATATTTTGTT 123108 36 100.0 30 .................................... TCTGATAAAGTTTGAGGACTAACCACAAGC 123174 36 100.0 30 .................................... ATAGGCATGTTCAACTAAATGCAGACCAAG 123240 36 100.0 30 .................................... ACTAAACACTTAGCGTTTACGAGGTCGAAC 123306 36 100.0 30 .................................... ATTTATTTTCCAACTGAACATCATCCCATT 123372 36 100.0 30 .................................... CCGTAAAGGGAACGAGGGCATGAGCACTTA 123438 36 100.0 30 .................................... AATGGACTGGACATGCACACGAACCTATAC 123504 36 100.0 30 .................................... GACTAGAACATTTGATGTACTGACTGCTAG 123570 36 91.7 0 .........T...................A.....T | ========== ====== ====== ====== ==================================== =============================== ================== 53 36 99.8 30 GTTTTAGAGCTGTGTTGAATTGAATGCCTCCAAAAC # Left flank : ATTGGTTATGAATTGTTAGATCATGAGTTAGATCTGGAACAGGATGAAATTACAGTTCAAGAACTGTTCAAAGCACTGGGCGTCCAAATTGAGACATCCAGTGATACAATATTTGAGAAAGTCTTTGAAATTTTGCAGATTTTTAAATATCTATCTAAGAAAAAGATGCTAATTTTTGTCAATGTTGCAAGCTACTTGACACTGGAAGAATTACAATCCATTCAAGAATTTTCAGAGCTTCAAGACTTGAAAATCATATTTTTAGAGAGATACAAAACACCCGGTTTTCCGCAGTATATATTGGATACAGACTATTTTCTTTGTGCGGAAAATATGGTATAATAAGGTAATATAACAAATTTATTTTTTATCAATTGTCCTTTGAAAATTGAATAAAATGAACAAAAAATACAACACAATAGCATTCATGATTCTGAAGTCCTTCGCTAGGACAAACAGCAAAAATCTAAGACGTCGACAATAAAAAAATTGGCTCCGAG # Right flank : TTTATTAATGTGATTATATGTAGGTACAAATTTAGAGTGCTGTTTCAATTCCTTACCTCTATATATTGATAATGAAAGGACTGATAGCCCCCACCAAGGCTATCAGTCCTTTTTTATTCCCCAAAATTCTGTTAAACTATAGAAAGTGATGAAAAAATAACGGAGAAAAAATAATTAATGAGTATTTTAACAGTACAAAAGCTAAGTCATGGCTTCGGAGATCGTGCGATTTTTGATGATGTCAATTTCCGCTTGCTTAAAGGTGAACATATCGGCTTTGTGGGAGCAAATGGCGAAGGGAAATCGACTTTCATGAATATTATCACGGGTGCCTTACAGCCCGATGAAGGTAAAATCACTTGGTCGACCAAGCATCGTGTGGGGTATATGGATCAGCATGCTGCGCTAGGCAAGGGTAAGACAACCCGCCAATCGCTATCTGAAGCTTTCCAGTATCTACTAGATGCAGAAGCTGAGATGAATGACATCTACGGGCGCAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGAATTGAATGCCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //